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Homology
BLAST of mRNA_L-elsbetiae_contig2104.6378.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI) HSP 1 Score: 172 bits (436), Expect = 4.160e-48 Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = 3
Query: 543 MEMARFMIYLTVPVVVITVCSDPKNMNTLLRGFNFVEYPPESKKLPSGKEIVKMMEEREAKRRAAAARAGVDAHLAAAGAVKRAPTSQKNGTILDATATVAPPAPNSLREGDQTPAAA---KKGWF 911
MEMARF +Y++VPVVVIT+CSDPKNMNTLLRGF FVEYPPESKKLPSGKEIV+MMEEREAKRR AA R+G+DAHLAAAGAV R PTS++ T LDATATV PP P++ RE DQ+ A K+GWF
Sbjct: 1 MEMARFFMYVSVPVVVITICSDPKNMNTLLRGFKFVEYPPESKKLPSGKEIVEMMEEREAKRRTAATRSGMDAHLAAAGAVTRTPTSRRTDTTLDATATV-PPTPDASREVDQSAAGTASKKRGWF 125
BLAST of mRNA_L-elsbetiae_contig2104.6378.1 vs. uniprot
Match: A0A7S2WWS6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWS6_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.250e-7 Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 3
Query: 477 GGANSTGENMRWMHPNPRKRYG--MEMARFMIYLTVPVVVITVCSDPKNMNTLLRGFNFVEYPPESKKLPSGKEIVKMMEE 713
G + TG+ RW + KR G +EM +F IYLT+PVV + DPK M ++ F ++ YPPE + P G ++VK+++E
Sbjct: 32 GSMDDTGKK-RWWGSSHVKRGGGRVEMFKFAIYLTIPVVASLLYGDPKTMEAIINRFRYIIYPPEGPRPPEGDQLVKILKE 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-05_004550.1 |
| Exons | 5 |
| Model size | 1617 |
| Cds size | 423 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815863.39469-UTR-L-elsbetiae_contig2104:60..511 | 1622815863.39469-UTR-L-elsbetiae_contig2104:60..511 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 61..511 + |
| 1691683153.877442-UTR-L-elsbetiae_contig2104:60..511 | 1691683153.877442-UTR-L-elsbetiae_contig2104:60..511 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 61..511 + |
| 1622815863.411746-UTR-L-elsbetiae_contig2104:1921..1973 | 1622815863.411746-UTR-L-elsbetiae_contig2104:1921..1973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 1922..1973 + |
| 1691683153.8904977-UTR-L-elsbetiae_contig2104:1921..1973 | 1691683153.8904977-UTR-L-elsbetiae_contig2104:1921..1973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 1922..1973 + |
| 1622815863.4709487-UTR-L-elsbetiae_contig2104:3956..4647 | 1622815863.4709487-UTR-L-elsbetiae_contig2104:3956..4647 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 3957..4647 + |
| 1691683153.9413123-UTR-L-elsbetiae_contig2104:3956..4647 | 1691683153.9413123-UTR-L-elsbetiae_contig2104:3956..4647 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2104 3957..4647 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815863.4237971-CDS-L-elsbetiae_contig2104:1973..2046 | 1622815863.4237971-CDS-L-elsbetiae_contig2104:1973..2046 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 1974..2046 + |
| 1691683153.9007456-CDS-L-elsbetiae_contig2104:1973..2046 | 1691683153.9007456-CDS-L-elsbetiae_contig2104:1973..2046 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 1974..2046 + |
| 1622815863.4367647-CDS-L-elsbetiae_contig2104:2930..2992 | 1622815863.4367647-CDS-L-elsbetiae_contig2104:2930..2992 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 2931..2992 + |
| 1691683153.9091678-CDS-L-elsbetiae_contig2104:2930..2992 | 1691683153.9091678-CDS-L-elsbetiae_contig2104:2930..2992 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 2931..2992 + |
| 1622815863.449462-CDS-L-elsbetiae_contig2104:3375..3528 | 1622815863.449462-CDS-L-elsbetiae_contig2104:3375..3528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 3376..3528 + |
| 1691683153.9202785-CDS-L-elsbetiae_contig2104:3375..3528 | 1691683153.9202785-CDS-L-elsbetiae_contig2104:3375..3528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 3376..3528 + |
| 1622815863.4603999-CDS-L-elsbetiae_contig2104:3821..3956 | 1622815863.4603999-CDS-L-elsbetiae_contig2104:3821..3956 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 3822..3956 + |
| 1691683153.9320252-CDS-L-elsbetiae_contig2104:3821..3956 | 1691683153.9320252-CDS-L-elsbetiae_contig2104:3821..3956 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2104 3822..3956 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2104.6378.1 >prot_L-elsbetiae_contig2104.6378.1 ID=prot_L-elsbetiae_contig2104.6378.1|Name=mRNA_L-elsbetiae_contig2104.6378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MRWMHPNPRKRYGMEMARFMIYLTVPVVVITVCSDPKNMNTLLRGFNFVE
YPPESKKLPSGKEIVKMMEEREAKRRAAAARAGVDAHLAAAGAVKRAPTS
QKNGTILDATATVAPPAPNSLREGDQTPAAAKKGWFGSSR* back to topmRNA from alignment at L-elsbetiae_contig2104:61..4647+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig2104.6378.1 ID=mRNA_L-elsbetiae_contig2104.6378.1|Name=mRNA_L-elsbetiae_contig2104.6378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4587bp|location=Sequence derived from alignment at L-elsbetiae_contig2104:61..4647+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTTATTATTTTTTCTTTCGTCTTGCATCACCCCCGTCCCCTGTGCTCT
CATGAGCTCGCTCCGAAGGGTGATCTTGTAGATAGATATGCAATGGATAT
GAAACTCGTGTTATCCCTTTATTCAGCAAGTTGGTCGTCGGGAAAGCGAG
GCTGTGGCGTGCGGCGTACGGCGTGCATCACGCAAACATGGAAGAGCCGG
CCATGGAGCCGGTCATAGAGCCGGTGCGGTGGTGAAAATTCAAGTTGGGC
CTCAAGAACCTAGTGCAAACCCCGTTCCTAGGTGCGTGCCCCCTTCCGCT
GACCTGACGACTCGGCTCTCGGCTGTCAGGGGAGCATTCACACTTTGCTT
TCTGTTCTGCCCTTTCCCCTTCCCTGACTTTCGGGGCTACCGACACGGCC
GGGCGTGGAAGAGATCTGACCGAAGGTGGGTGCGCTCTCCGACAGGACCA
GGTACAGAGTAGTTCTGCTCCGTTGCACCAGCTCAGAGTTGTTAGTTATA
CGAACGGTACCACCACAGAGAGCTTGAGTGTGACCGAAACTCGCAGATAC
AACAACACGATAATTGTGGCCTAGTACGACACGCATGTGTGGTTTGGGAG
TTTCGGTTCCTTCGACATGAGAGCGTCTTGTTCGAATACCGTAGGTGACA
CAAGATACCACACCCCCTGGACAGATTTTCAAAGCTCGATTTCTCCCCAG
CAAGAAGAGCGCCAGGGCCGAAAGGGGGTGCATTGGAAAGATCTGAGCGA
GGACTGTCCGAAAATGTGTCATTTGGTGCTGACACCTTCTTTGTTACGGA
GTAATGGAGCTCTAAAATTCGGCCCAGGGGGTGTGATATCTTGTGTCACC
CACGGTAGGCAATATTCATATTCGAAAGTCGTTCCAGCAAACATCCCCCT
CATCACTTCATTTCAGTTACAGACACAGATTTCAGTTACAGACACAGATA
CCTCAGGCCGTAGAGCAGGGAGAAAGGCGCAGCCCAGCATCAGTAGCAGT
AGCGAAATTCTAGCCCAGGGCTATTTAGCTGAAATGTAGGTGAAAAGTCA
ATGCATGAAACATGCGGGGTCGAACAAGTGAGGGATCCCCTCAGCAGGCG
GAGGCGGCAAGCCGGACAGCCTGACAGCATCAGCAATAGATTCGCCGTGA
TGTGCAAGACAATGTAACGCCCCACTCGCCGCTCGATGAGCGAACCAATA
CGTTACTTCTTGCGCGACACTTCCCTAAATACTGGTGTGGTTGATCTGCT
GTGCGGTTGATGTGTGCTTTCTCGGGGCGTTTTCAAAATTGCCCCAATTC
CAAAAATCGTGTACAGCAGGATGTACGTATGGATGGTTACATGCCCAGCA
TCATACCGATGAGGAAGAGTTAGAGTTTGTATGCAAACACTCCGACTGCT
GTGCAGCACACGCTTTCCACGGCAATTGCCGTCGGCAGACCAAATTCCGC
TGGCAACGCGAGACTCTCCCACCGACGCATTCCAAGAACGTGTCGGTCGC
ACCGCATGTCCGCCGGTCGGCCTCTCAGACGCTTACAGCAAACACTCTCT
TGCAGATAATCTACATACTAAGTGCAGCTAGCACCTCTCTCGTACATGAG
TCGACTGTTTAGACTACGAGTGCAGCTACCGCCCACCCTCTGTTCTCATA
CAGTGCCATCAAAGCCGCTCGACAGCATTAGTGGTGGGGCCGCAGTTCTC
CCCATTTGAGTTGGTTGTTTCCGCAGCAAACCATTCGCACCCCTTTATCT
ACATCGGTCTTACAAATCAAGATACAGCTGCTGGCTCATTTGTTCATGAG
TATGTAAAATATGTCAACTTCTCAAACGACTCTCACGATCGCTCGCGTTA
CCACCCTGCAGGACAGGAGTGAGAAGAGGAGAAGGAGGGGGGGCAAACTC
TACCGGAGAGAACATGCGGTGGATGCACCCAAACCCTCGAAAGAGGTATG
GCATGGAAATGGCCCGCTTCATGATCTACCTCACGGGTAAGTGAAGCACT
CCGTGTGTACGCGTACACACTCCAAGCTGCGTTCCAGCAGTACGAACATA
CATAAGGTCCTTTCAGCCGCGGTCGCATGCATAGCCAGAGGACATTGTAC
GTGTCGTGTGCCCGCTGCTGGGAGAGAGGGAGAGAGATACTCGACACAAG
CACACAGGAGGGCGTTTGATTTTGGCTTGCGCACACCAGCGAACGAACAG
CAGGCGGAAGCCTCTCTCTTCTGCTGTGGCGCTTGGCGAGTTACGGTGGT
GCTGTGCCTCTGCCCCTGCTGCTTGCAGATCTGGTGCCGATTAACCCTCC
TTGACCCAAGAATTTGTGGTGTACATAAGAAGGTACCAACAACATCTGCA
GCAGGAACACACGCTATGTACGCGGCTTAAAAAAAGCGAAGTAATCAAAC
CCGGGCAGTGTTCTTGGCTAGGCTGCTGCCTCAAGGGCAAGCTGCGGCGT
GCTCTGCCGCTGTCCTGACGGCGTGGGGATGTTGTGCTATGCAGCGTACT
TGTGCGCGTGTGTGCAGTTTTTTCTGGGTGGGGATTGCTCGGCGTCGTCC
GGTAGGTAACCCACGCACAGCAATAGTCGGCCCTTCTGCCCGTGCTGACC
CCTGGCTTGCTCAGCGTCGCCAGATATTAGTTTATCGCTTCGCTCGCAGC
AATGGCAGAAATGTCAACCGGCACTGGTTGATGTTGCCGCACAAAAGCGC
AACCCTTGTGTGACCTAGTGATTCTACCCATGTAGAAGTACATATATACC
ATGCGCCAACGTTTCCGCTACACATGTGCGATATCACCCCAACGAGCTGT
CTGTCCCGCCTGCCCCACCGCTCCTTGTCCTCGACGATGTGTTGTCTTCC
CCATCCTGTCCCTCTTTCAGTGCCGGTGGTCGTGATCACGGTATGCAGCG
ACCCGAAGAATATGAACACGTTGCTACGAGGGGTGAGTCGATGCGATGCT
GGTCCGAGAGGAGCCTCGGTGCGGTGGTCGACGGCTGGTGTACGTAGCGG
CCATCTCCCACCGGCCCTGACGTCGGTTTTGCCTCGTTCTTGGTGCCCAC
GGGCGGATGTTCGTGTGGTCTTGGTTGTGAACCACCCTATAGAGCTATTG
TACACTTCCCCCATGTATAGCACCATGGGCGTCCGGATGCTGTTGGCCAG
GTACTGCAATACTGTAGCCCATAATATTTCGTCTCCTCAACCGCGGTTCC
TTTTCCAGCGGCCCCCCTCTCTGTAATGAAAATGACACCCCCCCGCTCGG
CACTCTCTCTCCCGCTCTCCCCCGAACCCGACTGGTCTTGCTCCCGCGCA
CATCCCGACCGGAAGTTCAATTTTGTCGAGTACCCGCCAGAGTCGAAAAA
GCTCCCGTCCGGAAAGGAGATCGTTAAGATGATGGAGGAGAGAGAGGCGA
AGAGGCGAGCCGCGGCGGCGAGAGCAGGAGTTGATGCGCATCTCGCAGCT
GCGGGGGCGGTGAAGAGGGTAAGAGGAGGCATCTTCCGTAATTGTCGCTG
TATTTTTTCCTAAAACGTTCGGAAGGGAGGCAAAAGCTCTGTGAGGATTT
TTTTTCTATTGTTTTTTTTTGGGGAGGAGCAGGGGCAAGTCCTTGCCCCT
GCTGCCAACACAAACAACAGCTCTTCGTTTGGGTTTCCATCCTGCGCGTT
TTTTTCGAGCGTAACGTCTTCTTTTTTGTTAAGTTTGTCCTTGTTTCCGG
TTGCCTCGATTTTTTCCCGCCGCCGCCTTCCCTTGAAACGGCGCTGTTTT
GACCGCGGAAGGCGCCTACATCGCAAAAGAACGGCACCATCCTGGACGCC
ACCGCGACCGTAGCGCCGCCGGCACCCAACTCGTTGCGCGAAGGGGACCA
GACTCCCGCCGCAGCGAAGAAGGGTTGGTTTGGAAGCTCGCGATGAAGCA
GCAAGCAGTGGCGGGCCAAAGAGGTTTCTGTCGCTTCGAATTTTTGCAGT
GAATTGCCATGGCACGCAGCAGCCACGTATGTAGCACCCACGGGCTGACT
TCCTTGATGGTTTTCATTGGATCCAAAATGTGAAGCGAAGTTAGCAGAGG
GTGCACCTGAAGATTGGACGAGCGTGTGTGTTATCTCCAGAGATTCAACT
CTAAACGCTGGCTGTGGAAATCACTGCCGTTTCTTTTTTCGGTCTTGGTT
TTGCGATGCACCGGCGGTATCTGGGGGGGGGTCGATACGTTGGAAACTGT
CCCAGTAAGCATGTACATCGATTTTGTGAAGGCCAGTTAAGTTTTTTTTT
AGTACTTGTTTATACGAAGTTAAATTTAGCTCCTCCAAGGGCAGTATTTT
TGCCTCGTGCGTGCGAGCGCGCTCGAGCTTTTTAAGGACCAGACCCGCGG
TGCGGTGCGGGGGCGTATGCTAATATCGCATGTCGGGAGCCGTGCGTAAC
CATGCATGCGATGCTGCACACCGTTCAGCACCCTTTGCGCTATTTGCGCT
ATTTGCACGCCCACGCGCATTGCCTCCTCCGAGCTCTCAAAGGCATCGAA
TCCCACATTACATAAATGCAACTAAACAACCCGCAAAAAAAAAAAATGCG
TACATATGTAGGTGCTGCCGTACTAAATATGTTGACG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig2104:61..4647+ >mRNA_L-elsbetiae_contig2104.6378.1 ID=mRNA_L-elsbetiae_contig2104.6378.1|Name=mRNA_L-elsbetiae_contig2104.6378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig2104:61..4647+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTGGATGCACCCAAACCCTCGAAAGAGGTATGGCATGGAAATGGC
CCGCTTCATGATCTACCTCACGGATGCGGTGGATGCACCCAAACCCTCGA
AAGAGGTATGGCATGGAAATGGCCCGCTTCATGATCTACCTCACGGTGCC
GGTGGTCGTGATCACGGTATGCAGCGACCCGAAGAATATGAACACGTTGC
TACGAGGGTGCCGGTGGTCGTGATCACGGTATGCAGCGACCCGAAGAATA
TGAACACGTTGCTACGAGGGTTCAATTTTGTCGAGTACCCGCCAGAGTCG
AAAAAGCTCCCGTCCGGAAAGGAGATCGTTAAGATGATGGAGGAGAGAGA
GGCGAAGAGGCGAGCCGCGGCGGCGAGAGCAGGAGTTGATGCGCATCTCG
CAGCTGCGGGGGCGGTGAAGAGGTTCAATTTTGTCGAGTACCCGCCAGAG
TCGAAAAAGCTCCCGTCCGGAAAGGAGATCGTTAAGATGATGGAGGAGAG
AGAGGCGAAGAGGCGAGCCGCGGCGGCGAGAGCAGGAGTTGATGCGCATC
TCGCAGCTGCGGGGGCGGTGAAGAGGGCGCCTACATCGCAAAAGAACGGC
ACCATCCTGGACGCCACCGCGACCGTAGCGCCGCCGGCACCCAACTCGTT
GCGCGAAGGGGACCAGACTCCCGCCGCAGCGAAGAAGGGTTGGTTTGGAA
GCTCGCGATGAGCGCCTACATCGCAAAAGAACGGCACCATCCTGGACGCC
ACCGCGACCGTAGCGCCGCCGGCACCCAACTCGTTGCGCGAAGGGGACCA
GACTCCCGCCGCAGCGAAGAAGGGTTGGTTTGGAAGCTCGCGATGA back to top
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