mRNA_L-elsbetiae_contig21030.6376.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21030.6376.1
Unique NamemRNA_L-elsbetiae_contig21030.6376.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21030.6376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21030contigL-elsbetiae_contig21030:392..1854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1266
Cds size1266
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21030.6376.1prot_L-elsbetiae_contig21030.6376.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21030 392..1854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.1115968-CDS-L-elsbetiae_contig21030:391..11261622815863.1115968-CDS-L-elsbetiae_contig21030:391..1126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 392..1126 -
1691683153.697552-CDS-L-elsbetiae_contig21030:391..11261691683153.697552-CDS-L-elsbetiae_contig21030:391..1126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 392..1126 -
1622815863.1215587-CDS-L-elsbetiae_contig21030:1195..13971622815863.1215587-CDS-L-elsbetiae_contig21030:1195..1397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 1196..1397 -
1691683153.7130613-CDS-L-elsbetiae_contig21030:1195..13971691683153.7130613-CDS-L-elsbetiae_contig21030:1195..1397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 1196..1397 -
1622815863.1338468-CDS-L-elsbetiae_contig21030:1525..18541622815863.1338468-CDS-L-elsbetiae_contig21030:1525..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 1526..1854 -
1691683153.7252169-CDS-L-elsbetiae_contig21030:1525..18541691683153.7252169-CDS-L-elsbetiae_contig21030:1525..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21030 1526..1854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21030.6376.1

>prot_L-elsbetiae_contig21030.6376.1 ID=prot_L-elsbetiae_contig21030.6376.1|Name=mRNA_L-elsbetiae_contig21030.6376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=422bp
FDCNIDNVVWPRELCSLSFGKSFDRLMFRALWPVSLQHLTFGGSFNQPIT
GIAWPPLLKTLVFGRNFNQPIAGIVWPPSLEQLTFGWGFGQPLTGVSWPP
LLRKIVFGNVNVRQPIDKISWPASLQHLLFTGRFYYSTCGTWPDSAQQLT
FGFFFRLRFNQVSFENVAWPSSLRNLTRLHFPEGFNRPIDGNFLPDTLKA
VTFGKAFNQPIAGVVWPSSVERLSLGGTGRLQEPISSIAWPSSLTHLICG
EHFDQKDFPAWPGSLQEMPFEHYFRLYFNTSLASVSWPASLRQLTIYGMD
HTLGQRTDVRMLPPSLDTLDFPDRFDEPLDRVPWTQGGLEEVKFGSSFNQ
PINGVGWPPKVTTITFGRAYDQPIDGVLWPPTVRTIIFGHDFDQRIDRVS
WTNVEKLVFGDSFNQPIDRVPW
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mRNA from alignment at L-elsbetiae_contig21030:392..1854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21030.6376.1 ID=mRNA_L-elsbetiae_contig21030.6376.1|Name=mRNA_L-elsbetiae_contig21030.6376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1463bp|location=Sequence derived from alignment at L-elsbetiae_contig21030:392..1854- (Laminarionema elsbetiae ELsaHSoW15)
TTCGACTGCAATATCGACAACGTCGTGTGGCCTCGCGAGCTGTGCAGCCT
TTCGTTTGGAAAGAGCTTCGACAGGCTGATGTTCAGGGCCTTGTGGCCCG
TGTCGCTGCAACATCTCACGTTTGGCGGGAGCTTCAACCAGCCAATCACA
GGGATCGCTTGGCCGCCGCTCCTCAAGACCCTGGTCTTCGGTCGCAACTT
CAATCAGCCAATCGCCGGGATCGTGTGGCCTCCGTCGTTGGAACAGCTTA
CGTTCGGCTGGGGGTTCGGTCAACCTTTGACTGGGGTTTCGTGGCCGCCG
TTGCTCAGGAAGATCGTTTTCGGCAACGTGTTCAACCAGCCGGTCGACGA
CACTTCTTTCCCACCATCGGTCCAGCAGCTCACCTTCGGCATGAGGTTCA
ACCAACCGATCGACAGTTTGCGACGCCTACCATCGATACGGAGTATCACC
TTGGGAGAAATGTTCGCCAACCAATCGACAAAATATCTTGGCCAGCGTCA
CTCCAACACCTGCTGTTCACGGGACGCTTCTACTATTCCACCTGTGGGAC
GTGGCCAGATTCGGCGCAGCAGCTGACCTTCGGCTTCTTCTTTCGGTTAC
GCTTCAACCAGGTCTCGTTCGAAAACGTAGCGTGGCCATCGTCACTTCGG
AACCTGACGGTTTGGGGCATGGAATTCGCCGTCGGCCAGCCGACCGATAA
TTTTATGTTGCCTCCTTCTCCGCTGCAGAGACTCCATTTTCCGGAAGGTT
TCAATAGGCCAATCGACGGGAATTTTTTGCCGGATACTTTGAAGGCGGTG
ACGTTCGGAAAGGCGTTCAACCAGCCAATCGCCGGAGTTGTGTGGCCGTC
GTCGGTGGAGCGCCTGAGCTTAGGCGGCACCGGTCGCCTTCAGGAGCCAA
TTTCCAGTATAGCATGGCCATCATCGCTGACGCACCTCATCTGTGGTGAA
CACTTCGACCAAAAAGATTTTCCGGCGTGGCCGGGGTCGCTGCAGGAGAT
GCCTTTCGAGCATTACTTTCGGTTGTATTTCAACACATCGTTGGCCAGTG
TATCATGGCCAGCATCACTTCGCCAACTCACCATCTACGGGATGGATCAC
ACGCTGGGTCAGCGGACTGATGTTCGGATGCTGCCGCCTTCCCTCGACAC
GCTGGACTTCCCGGACCGCTTCGACGAGCCTCTTGACCGGGTCCCATGGA
CACAAGGTGGTCTGGAGGAAGTAAAGTTCGGGTCAAGCTTCAACCAGCCG
ATCAACGGCGTTGGTTGGCCACCTAAGGTCACAACTATCACCTTCGGGCG
CGCCTACGACCAGCCGATAGATGGCGTTCTTTGGCCACCTACGGTGAGAA
CCATCATCTTCGGGCACGATTTCGACCAGCGAATCGATCGTGTTTCATGG
ACCAACGTTGAAAAGCTTGTCTTCGGAGATAGCTTCAATCAGCCTATTGA
TCGAGTACCCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21030:392..1854-

>mRNA_L-elsbetiae_contig21030.6376.1 ID=mRNA_L-elsbetiae_contig21030.6376.1|Name=mRNA_L-elsbetiae_contig21030.6376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2532bp|location=Sequence derived from alignment at L-elsbetiae_contig21030:392..1854- (Laminarionema elsbetiae ELsaHSoW15)
TTCGACTGCAATATCGACAACGTCGTGTGGCCTCGCGAGCTGTGCAGCCT
TTCGTTTGGAAAGAGCTTCGACAGGCTGATGTTCAGGGCCTTGTGGCCCG
TGTCGCTGCAACATCTCACGTTTGGCGGGAGCTTCAACCAGCCAATCACA
GGGATCGCTTGGCCGCCGCTCCTCAAGACCCTGGTCTTCGGTCGCAACTT
CAATCAGCCAATCGCCGGGATCGTGTGGCCTCCGTCGTTGGAACAGCTTA
CGTTCGGCTGGGGGTTCGGTCAACCTTTGACTGGGGTTTCGTGGCCGCCG
TTGCTCAGGAAGATCGTTTTCGGCAACGTTTCGACTGCAATATCGACAAC
GTCGTGTGGCCTCGCGAGCTGTGCAGCCTTTCGTTTGGAAAGAGCTTCGA
CAGGCTGATGTTCAGGGCCTTGTGGCCCGTGTCGCTGCAACATCTCACGT
TTGGCGGGAGCTTCAACCAGCCAATCACAGGGATCGCTTGGCCGCCGCTC
CTCAAGACCCTGGTCTTCGGTCGCAACTTCAATCAGCCAATCGCCGGGAT
CGTGTGGCCTCCGTCGTTGGAACAGCTTACGTTCGGCTGGGGGTTCGGTC
AACCTTTGACTGGGGTTTCGTGGCCGCCGTTGCTCAGGAAGATCGTTTTC
GGCAACGTAAATGTTCGCCAACCAATCGACAAAATATCTTGGCCAGCGTC
ACTCCAACACCTGCTGTTCACGGGACGCTTCTACTATTCCACCTGTGGGA
CGTGGCCAGATTCGGCGCAGCAGCTGACCTTCGGCTTCTTCTTTCGGTTA
CGCTTCAACCAGGTCTCGTTCGAAAACGTAGCGTGGCCATCGTCACTTCG
GAACCTGACGAAATGTTCGCCAACCAATCGACAAAATATCTTGGCCAGCG
TCACTCCAACACCTGCTGTTCACGGGACGCTTCTACTATTCCACCTGTGG
GACGTGGCCAGATTCGGCGCAGCAGCTGACCTTCGGCTTCTTCTTTCGGT
TACGCTTCAACCAGGTCTCGTTCGAAAACGTAGCGTGGCCATCGTCACTT
CGGAACCTGACGAGACTCCATTTTCCGGAAGGTTTCAATAGGCCAATCGA
CGGGAATTTTTTGCCGGATACTTTGAAGGCGGTGACGTTCGGAAAGGCGT
TCAACCAGCCAATCGCCGGAGTTGTGTGGCCGTCGTCGGTGGAGCGCCTG
AGCTTAGGCGGCACCGGTCGCCTTCAGGAGCCAATTTCCAGTATAGCATG
GCCATCATCGCTGACGCACCTCATCTGTGGTGAACACTTCGACCAAAAAG
ATTTTCCGGCGTGGCCGGGGTCGCTGCAGGAGATGCCTTTCGAGCATTAC
TTTCGGTTGTATTTCAACACATCGTTGGCCAGTGTATCATGGCCAGCATC
ACTTCGCCAACTCACCATCTACGGGATGGATCACACGCTGGGTCAGCGGA
CTGATGTTCGGATGCTGCCGCCTTCCCTCGACACGCTGGACTTCCCGGAC
CGCTTCGACGAGCCTCTTGACCGGGTCCCATGGACACAAGGTGGTCTGGA
GGAAGTAAAGTTCGGGTCAAGCTTCAACCAGCCGATCAACGGCGTTGGTT
GGCCACCTAAGGTCACAACTATCACCTTCGGGCGCGCCTACGACCAGCCG
ATAGATGGCGTTCTTTGGCCACCTACGGTGAGAACCATCATCTTCGGGCA
CGATTTCGACCAGCGAATCGATCGTGTTTCATGGACCAACGTTGAAAAGC
TTGTCTTCGGAGATAGCTTCAATCAGCCTATTGATCGAGTACCCTGGAGA
CTCCATTTTCCGGAAGGTTTCAATAGGCCAATCGACGGGAATTTTTTGCC
GGATACTTTGAAGGCGGTGACGTTCGGAAAGGCGTTCAACCAGCCAATCG
CCGGAGTTGTGTGGCCGTCGTCGGTGGAGCGCCTGAGCTTAGGCGGCACC
GGTCGCCTTCAGGAGCCAATTTCCAGTATAGCATGGCCATCATCGCTGAC
GCACCTCATCTGTGGTGAACACTTCGACCAAAAAGATTTTCCGGCGTGGC
CGGGGTCGCTGCAGGAGATGCCTTTCGAGCATTACTTTCGGTTGTATTTC
AACACATCGTTGGCCAGTGTATCATGGCCAGCATCACTTCGCCAACTCAC
CATCTACGGGATGGATCACACGCTGGGTCAGCGGACTGATGTTCGGATGC
TGCCGCCTTCCCTCGACACGCTGGACTTCCCGGACCGCTTCGACGAGCCT
CTTGACCGGGTCCCATGGACACAAGGTGGTCTGGAGGAAGTAAAGTTCGG
GTCAAGCTTCAACCAGCCGATCAACGGCGTTGGTTGGCCACCTAAGGTCA
CAACTATCACCTTCGGGCGCGCCTACGACCAGCCGATAGATGGCGTTCTT
TGGCCACCTACGGTGAGAACCATCATCTTCGGGCACGATTTCGACCAGCG
AATCGATCGTGTTTCATGGACCAACGTTGAAAAGCTTGTCTTCGGAGATA
GCTTCAATCAGCCTATTGATCGAGTACCCTGG
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