mRNA_L-elsbetiae_contig2102.6372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2102.6372.1
Unique NamemRNA_L-elsbetiae_contig2102.6372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2102.6372.1 vs. uniprot
Match: D7FU85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU85_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 8.820e-27
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 2 
Query:  329 QVLLGVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNIGDRT 496
            +V +GVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLN+GDRT
Sbjct:   20 KVFVGVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNVGDRT 75
[Close]
BLAST of mRNA_L-elsbetiae_contig2102.6372.1 vs. uniprot
Match: A0A835ZBU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.470e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 2 
Query:  329 QVLLGVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNI 484
            Q L+G   +CAICAIP++   + KPGHGLFDSEKPQ +E AQ+  R+  L +
Sbjct:   16 QALVGTAIVCAICAIPMIN-RKTKPGHGLFDSEKPQEIEQAQDAQRKATLGV 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2102.6372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU85_ECTSI8.820e-2792.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBU4_9STRA5.470e-953.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2102contigL-elsbetiae_contig2102:2159..3391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_003120.1
Exons1
Model size1233
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2102.6372.1prot_L-elsbetiae_contig2102.6372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2102 2238..2657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.725176-UTR-L-elsbetiae_contig2102:2158..22371622815862.725176-UTR-L-elsbetiae_contig2102:2158..2237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2102 2159..2237 +
1691683153.4580543-UTR-L-elsbetiae_contig2102:2158..22371691683153.4580543-UTR-L-elsbetiae_contig2102:2158..2237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2102 2159..2237 +
1622815862.749577-UTR-L-elsbetiae_contig2102:2657..33911622815862.749577-UTR-L-elsbetiae_contig2102:2657..3391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2102 2658..3391 +
1691683153.479692-UTR-L-elsbetiae_contig2102:2657..33911691683153.479692-UTR-L-elsbetiae_contig2102:2657..3391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2102 2658..3391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.7371852-CDS-L-elsbetiae_contig2102:2237..26571622815862.7371852-CDS-L-elsbetiae_contig2102:2237..2657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2102 2238..2657 +
1691683153.4695497-CDS-L-elsbetiae_contig2102:2237..26571691683153.4695497-CDS-L-elsbetiae_contig2102:2237..2657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2102 2238..2657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2102.6372.1

>prot_L-elsbetiae_contig2102.6372.1 ID=prot_L-elsbetiae_contig2102.6372.1|Name=mRNA_L-elsbetiae_contig2102.6372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MSAVCIRPICEKSSSGRHLGQQRHAVCTPQSVLGTQGRSEEIEGGRSLVT
KAMFANNARLPIHPPPHRHHWPSSSFCSNYRCCQVLLGVTTICAICAIPV
LRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNIGDRT*
back to top

mRNA from alignment at L-elsbetiae_contig2102:2159..3391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2102.6372.1 ID=mRNA_L-elsbetiae_contig2102.6372.1|Name=mRNA_L-elsbetiae_contig2102.6372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1233bp|location=Sequence derived from alignment at L-elsbetiae_contig2102:2159..3391+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCGTTAGTTCACACCTTTGCTGAGCACCGTCAATTTGTGACTGGCAC
TCCTGACATTTTCAACAAGTGCCCTGCAGATGTCAGCGGTCTGCATACGC
CCAATCTGTGAAAAGTCGTCCTCGGGGAGACATTTGGGGCAACAACGGCA
CGCTGTGTGCACGCCGCAGAGCGTTCTGGGTACTCAAGGGCGCTCTGAAG
AGATCGAGGGGGGGCGTTCTCTAGTTACAAAGGCGATGTTCGCGAATAAT
GCTCGCCTTCCTATCCACCCACCACCCCATCGGCATCATTGGCCCTCCTC
TTCCTTCTGCTCGAACTACCGCTGCTGCCAGGTGTTGCTCGGTGTCACGA
CTATATGCGCCATCTGCGCCATCCCCGTGCTCCGGCCGAATCGGCCCAAG
CCGGGCCATGGCCTCTTCGATAGCGAGAAGCCCCAAGCTGTAGAGCTAGC
ACAGGAAGAAGCCAGGCGGAAAAAGCTCAACATCGGAGATCGGACATAGT
ATTTTGCATTACTTTACCTAGCCGCGGCGTTTATGCGTAGAAAGTAGGGT
GTGTACCGCGGCAACCTGTAAGATATCCACTGCTGAGATCGGTGTTTTTT
TTGTTGCGTCTTTGCGAGAGGTTCAGGAATCTCCACCGCTGCGGTAGTCG
GTACCGGATACTTCGAGCCTAAACACAAGTTCAGCTTGAAGTTTTCTTGC
GTGTGCCCTGGGTTTGATAATTGGTGTCATGTATGTTTGTGCTGAGAGGT
TTCGGTGGTGAAAGTGACCTCTCGAGTGACGACGCTGACGGCTGCGGTAC
GGGGAATCCGATTCAATTCAGAGTTTGTGGAGTCAGTGCCTTAGACGCCA
CACTGGAAAAGCTGCATCTTGGTAGGGTCAGACCTTGTGCTAGGTAGGAC
AGCGAGGTGTTTCTTCCCCTAGGGAGATTTGGCGAGGCACGGATGGTGGG
TGTTCCCGGAAAGCAGCAGTATTTGAGAGCAGGAGAGAGGGGAACTTAGT
TAGCACGAAAGGTGTCACGTCGCAAAAACAATGTATGTAAAACAAACATG
TAACCACGTAACTAGAAACAAACCAGCACTTTGATTTTTAGTCAAACTCG
GCGACGTATTCCTATCTTAAAAGAAGACAACGAGACCACGGCGTTTCGGT
GGGCTTCTCCCGCCCAGAATATTTGCTGGTTGACCTGGCATAAAGATACA
GGGAGGTTTTGAACTTTTCTAATTTAGTACGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2102:2159..3391+

>mRNA_L-elsbetiae_contig2102.6372.1 ID=mRNA_L-elsbetiae_contig2102.6372.1|Name=mRNA_L-elsbetiae_contig2102.6372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig2102:2159..3391+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCGGTCTGCATACGCCCAATCTGTGAAAAGTCGTCCTCGGGGAG
ACATTTGGGGCAACAACGGCACGCTGTGTGCACGCCGCAGAGCGTTCTGG
GTACTCAAGGGCGCTCTGAAGAGATCGAGGGGGGGCGTTCTCTAGTTACA
AAGGCGATGTTCGCGAATAATGCTCGCCTTCCTATCCACCCACCACCCCA
TCGGCATCATTGGCCCTCCTCTTCCTTCTGCTCGAACTACCGCTGCTGCC
AGGTGTTGCTCGGTGTCACGACTATATGCGCCATCTGCGCCATCCCCGTG
CTCCGGCCGAATCGGCCCAAGCCGGGCCATGGCCTCTTCGATAGCGAGAA
GCCCCAAGCTGTAGAGCTAGCACAGGAAGAAGCCAGGCGGAAAAAGCTCA
ACATCGGAGATCGGACATAGATGTCAGCGGTCTGCATACGCCCAATCTGT
GAAAAGTCGTCCTCGGGGAGACATTTGGGGCAACAACGGCACGCTGTGTG
CACGCCGCAGAGCGTTCTGGGTACTCAAGGGCGCTCTGAAGAGATCGAGG
GGGGGCGTTCTCTAGTTACAAAGGCGATGTTCGCGAATAATGCTCGCCTT
CCTATCCACCCACCACCCCATCGGCATCATTGGCCCTCCTCTTCCTTCTG
CTCGAACTACCGCTGCTGCCAGGTGTTGCTCGGTGTCACGACTATATGCG
CCATCTGCGCCATCCCCGTGCTCCGGCCGAATCGGCCCAAGCCGGGCCAT
GGCCTCTTCGATAGCGAGAAGCCCCAAGCTGTAGAGCTAGCACAGGAAGA
AGCCAGGCGGAAAAAGCTCAACATCGGAGATCGGACATAG
back to top