mRNA_L-elsbetiae_contig21003.6368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21003.6368.1
Unique NamemRNA_L-elsbetiae_contig21003.6368.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: D8LM52_ECTSI (Uric acid-xanthine permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM52_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.230e-46
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 MKGKDEFINDAGEFDGEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNFADGILC 267
            MK K EF++D  EFDG KAYGA+LGTFLVCSWVE+ LAFIKP ALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFC DN+A  ILC
Sbjct:   81 MKEKSEFLDDNDEFDGVKAYGAVLGTFLVCSWVEIFLAFIKPNALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCADNYAIDILC 169
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A7S0Y369_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y369_HEMAN)

HSP 1 Score: 105 bits (262), Expect = 1.740e-24
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   37 EFDGEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDN 246
            ++ G++AYGA LGT LVC W+EV+L+F  P+ LR+ FPP+VTGV V LIG AL GTG KYWGGGAFC DN
Sbjct:  213 KYSGQEAYGAFLGTCLVCVWLEVILSFCPPKLLRRAFPPMVTGVCVMLIGVALTGTGLKYWGGGAFCADN 282
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A830HQ69_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HQ69_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.120e-21
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   46 GEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGD 243
            G  AYG +LGT +VCS++E+ L+FI P  L+K FPPIV+GVTV LIGAAL GTG KYWGGGA C D
Sbjct:  144 GSDAYGRMLGTIMVCSFLEIFLSFIPPAQLKKAFPPIVSGVTVMLIGAALTGTGMKYWGGGAVCAD 209
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: L1J5M8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5M8_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-21
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   37 EFDGEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNF 249
            ++ G++AYGA LGT +VC+++E+ L+F+    LR+ FPPIVTG  V LIG  L GTG KYWGGGAFC DN+
Sbjct:  189 KYSGQEAYGAFLGTSMVCAFLEIFLSFVPRAQLRRAFPPIVTGTCVLLIGVGLTGTGMKYWGGGAFCADNY 259
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A388KVF1_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KVF1_CHABU)

HSP 1 Score: 92.4 bits (228), Expect = 7.080e-20
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   49 EKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDN 246
            + AYG ILGT LV  W+EV+L+F  P+ LR++FPP+VTGV V LIG +LV  GFKYWGGG  C DN
Sbjct: 1377 QDAYGEILGTVLVGCWLEVILSFCPPRVLRRIFPPVVTGVVVVLIGTSLVAVGFKYWGGGVDCADN 1442
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A383VE55_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VE55_TETOB)

HSP 1 Score: 92.0 bits (227), Expect = 9.130e-20
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   49 EKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNF 249
            E A G +LGT  VC+   ++L+F+  +AL+KVFPPIVTG T+FLIGA L+ TGFKYWGGG FCG+N+
Sbjct:  127 EVALGKMLGTSAVCAVWPMILSFMPARALKKVFPPIVTGTTIFLIGAKLIATGFKYWGGGVFCGENY 193
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: UAPA_EMENI (Uric acid-xanthine permease n=2 Tax=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) TaxID=227321 RepID=UAPA_EMENI)

HSP 1 Score: 91.7 bits (226), Expect = 1.230e-19
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   52 KAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNFADGILC 267
            +AYGA++GT   C+ VE+LLAF+ P+ ++K+FPPIVTG TV LIG +L+GTGFK W GG+ C D   DG+LC
Sbjct:  187 EAYGALIGTSACCALVEILLAFVPPKVIQKIFPPIVTGPTVMLIGISLIGTGFKDWAGGSACMD---DGMLC 255
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A5J4Y735_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y735_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.260e-19
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   52 KAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNFADGI 261
            +AYG ILGT L C WV V L+F+ P+ LR+ FPP+VTG+T+FLIGA L+GTG K WGGG+ C   +A+G+
Sbjct:  150 EAYGRILGTQLACCWVAVALSFMPPRMLRRCFPPMVTGLTIFLIGAGLIGTGLKAWGGGSVC-QEYAEGL 218
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BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A6U5ZEU0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5ZEU0_GUITH)

HSP 1 Score: 91.3 bits (225), Expect = 1.740e-19
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   37 EFDGEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNFA 252
            +F G++AYGA LGT +VCS +EV ++ +  + LRK+FP  V GV V LIG  L GTG KYWGGGAFC ++FA
Sbjct:  243 KFSGQEAYGAFLGTCMVCSLLEVFISIVPQKFLRKLFPQHVAGVCVLLIGVGLTGTGIKYWGGGAFCAEHFA 314
[Close]
BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Match: A0A0D6R1P1_ARACU (Uncharacterized protein n=2 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R1P1_ARACU)

HSP 1 Score: 90.5 bits (223), Expect = 3.220e-19
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   46 GEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFPPIVTGVTVFLIGAALVGTGFKYWGGGAFCGDN 246
            GE AYG ILGT +VC W++V  +F  P+ LR++FPP VTG+++ LIG +L+ TGF+YWGGG++C   
Sbjct:  180 GEDAYGHILGTIVVCCWLQVAASFCPPRILRRIFPPTVTGISIILIGVSLITTGFEYWGGGSYCASQ 246
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21003.6368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM52_ECTSI1.230e-4683.15Uric acid-xanthine permease n=1 Tax=Ectocarpus sil... [more]
A0A7S0Y369_HEMAN1.740e-2465.71Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A830HQ69_9CHLO1.120e-2166.67Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
L1J5M8_GUITC1.200e-2157.75Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A388KVF1_CHABU7.080e-2062.12Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A383VE55_TETOB9.130e-2061.19Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
UAPA_EMENI1.230e-1958.33Uric acid-xanthine permease n=2 Tax=Emericella nid... [more]
A0A5J4Y735_9CHLO1.260e-1958.57Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A6U5ZEU0_GUITH1.740e-1956.94Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A0D6R1P1_ARACU3.220e-1953.73Uncharacterized protein n=2 Tax=Araucaria cunningh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21003contigL-elsbetiae_contig21003:1624..2233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.2e-36
Seed eggNOG ortholog2880.D8LM52
KEGG koko:K03458
KEGG TC2.A.40
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0002054,GO:0002060,GO:0003674,GO:0005215,GO:0005345,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005775,GO:0005776,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006863,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0010008,GO:0012505,GO:0015075,GO:0015143,GO:0015205,GO:0015711,GO:0015747,GO:0015851,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031974,GO:0031982,GO:0034220,GO:0034423,GO:0036094,GO:0042906,GO:0042907,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0097159,GO:0097708,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:1901363,GO:1901702,GO:1904823
EggNOG free text desc.xanthine transmembrane transporter activity
EggNOG OGs2QQD4@2759,COG2233@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionXanthine/uracil/vitamin C permease
Ec32 orthologEc-06_002490.1
Exons2
Model size273
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.3822334-CDS-L-elsbetiae_contig21003:1623..17521622815862.3822334-CDS-L-elsbetiae_contig21003:1623..1752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 1624..1752 +
1691683153.2496314-CDS-L-elsbetiae_contig21003:1623..17521691683153.2496314-CDS-L-elsbetiae_contig21003:1623..1752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 1624..1752 +
1622815862.3956745-CDS-L-elsbetiae_contig21003:2089..22331622815862.3956745-CDS-L-elsbetiae_contig21003:2089..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 2090..2233 +
1691683153.2663167-CDS-L-elsbetiae_contig21003:2089..22331691683153.2663167-CDS-L-elsbetiae_contig21003:2089..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21003 2090..2233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21003.6368.1prot_L-elsbetiae_contig21003.6368.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21003 1624..2233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21003.6368.1

>prot_L-elsbetiae_contig21003.6368.1 ID=prot_L-elsbetiae_contig21003.6368.1|Name=mRNA_L-elsbetiae_contig21003.6368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MKGKDEFINDAGEFDGEKAYGAILGTFLVCSWVEVLLAFIKPQALRKVFP
PIVTGVTVFLIGAALVGTGFKYWGGGAFCGDNFADGILCS*
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mRNA from alignment at L-elsbetiae_contig21003:1624..2233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21003.6368.1 ID=mRNA_L-elsbetiae_contig21003.6368.1|Name=mRNA_L-elsbetiae_contig21003.6368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=610bp|location=Sequence derived from alignment at L-elsbetiae_contig21003:1624..2233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGGTAAGGACGAGTTCATTAACGACGCCGGTGAGTTCGACGGCGA
GAAGGCCTACGGGGCTATCCTCGGAACGTTCCTCGTCTGCTCGTGGGTGG
AGGTTCTCCTTGCCTTCATCAAGCCCCAGGTGAGTGCGCTGTTTAATCGT
GGGATCCAACTGATTTTGTTAGGTGTTTGGTCGTGGCGATGATGGTGTCA
CCATTATTTTGGAATCCAAATGGTTGTTTGCTGCTGTTAGTCACTGTTAC
TGTTTTTGCTGTTGGTGTTGGCGGAAAATGTTTTCGGCGCACGATCAAAT
AACGTTCCAACTCCCCATCCAGCGCCTACCTCACTGTTCGGCACGATTCT
CCGAGGAGGCGTTTGCCGAACGTGTGGGCCATTCCTCCCTCCGTGCCAGT
GCAGAACAAATTACCCACGCTGCAATAAACGGTGTCTGTTGACGACGCGG
AACGAATGGCACGCAGGCCCTGCGCAAGGTGTTCCCCCCCATCGTCACTG
GCGTTACCGTCTTCCTCATCGGCGCCGCTCTCGTGGGCACCGGTTTCAAG
TACTGGGGAGGCGGTGCCTTCTGCGGGGACAACTTTGCGGACGGAATCCT
TTGCTCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21003:1624..2233+

>mRNA_L-elsbetiae_contig21003.6368.1 ID=mRNA_L-elsbetiae_contig21003.6368.1|Name=mRNA_L-elsbetiae_contig21003.6368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig21003:1624..2233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGGTAAGGACGAGTTCATTAACGACGCCGGTGAGTTCGACGGCGA
GAAGGCCTACGGGGCTATCCTCGGAACGTTCCTCGTCTGCTCGTGGGTGG
AGGTTCTCCTTGCCTTCATCAAGCCCCAGATGAAGGGTAAGGACGAGTTC
ATTAACGACGCCGGTGAGTTCGACGGCGAGAAGGCCTACGGGGCTATCCT
CGGAACGTTCCTCGTCTGCTCGTGGGTGGAGGTTCTCCTTGCCTTCATCA
AGCCCCAGGCCCTGCGCAAGGTGTTCCCCCCCATCGTCACTGGCGTTACC
GTCTTCCTCATCGGCGCCGCTCTCGTGGGCACCGGTTTCAAGTACTGGGG
AGGCGGTGCCTTCTGCGGGGACAACTTTGCGGACGGAATCCTTTGCTCGT
AAGCCCTGCGCAAGGTGTTCCCCCCCATCGTCACTGGCGTTACCGTCTTC
CTCATCGGCGCCGCTCTCGTGGGCACCGGTTTCAAGTACTGGGGAGGCGG
TGCCTTCTGCGGGGACAACTTTGCGGACGGAATCCTTTGCTCGTAA
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