mRNA_L-elsbetiae_contig2100.6366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2100.6366.1
Unique NamemRNA_L-elsbetiae_contig2100.6366.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: D7FZH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH3_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.020e-90
Identity = 158/295 (53.56%), Postives = 191/295 (64.75%), Query Frame = 2 
Query:   56 LGCLAALVFSTTSGAFVVASPR--RRAGVH---HPTRRCQGRRGVAAFGTVHASMVHEAVSRARPALPGSALRLRGGXXXXXXXXXXXXXXXXXXXXXXXNTKGRRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMSKWVK 925
            L  L+AL FSTT+G  +V+S    R +G H   H   R  G    AA G V  +M + A      ALP  A R + G                         KGR + R+W RYL ALE RPLLTK+LS+GVI GTAN+IEQTLSPA FSLV W AFTLVG VFIG  LH WY  LER+ +S+ +TSR+ S+WGRV++QV +DQ+ GAS +N GYFA HTV LAGLTG  FPLPELGSS+  KV SRYV M++NN +LWP VS +NF  +P +LRVLV+N VAV WGYLMSKW +
Sbjct:   12 LVALSALAFSTTTGDALVSSAGAGRWSGGHCRHHLQSRSSGWHRAAALGKVETTMTNAA-----EALPADASRFQAGGASGGGVEDAG------------KIKGRGVSRMWGRYLHALENRPLLTKSLSSGVISGTANLIEQTLSPAAFSLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRIKSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELGSSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMSKWCR 289
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: A0A6H5L3N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N7_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.050e-73
Identity = 142/298 (47.65%), Postives = 180/298 (60.40%), Query Frame = 2 
Query:   65 LAALVFSTTSGAFVVASPRRRAGV--HHPTRRCQGRRGVAAFGTVHASMVHEAVS---------RARPALPGSALRLRGGXXXXXXXXXXXXXXXXXXXXXXXNTKGRRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMSKWVK 925
            L ALV ST S AF  ++ R RA    H     C GR   AA  TV A M +  V           +R ALP +AL+ RGG                        +  RR+  VW RYL AL  +PLLTKALS+GV+ GTAN+IEQTLS A F+  GWV F+L G VF G  LH+WYN+L+R+ ++KA+TSRVP +WGRV  QV +D   GA+ LNCGYFA+H +  +  TG +FPLP LG  +  K+ SRY  M++ N ++WP V  LNF  VP +LRVLV+N VAVFWGYL+SKW +
Sbjct:   32 LTALVLSTASEAFFTSAGRLRASSQRHLLLPSCAGRHRGAALDTV-AKMANVTVGDCVDPMLPCASRVALP-NALQTRGGTISSSSSNSSVVAEDKG------RSARRRLSVVWGRYLGALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFNWEGWVVFSLTGIVFKGMFLHYWYNILDRLGNAKAVTSRVPGKWGRVSFQVLVDTIIGATLLNCGYFAVHEIFSSITTGRLFPLPGLGLRIVEKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 321
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: D7FZH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH5_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 6.270e-65
Identity = 110/215 (51.16%), Postives = 138/215 (64.19%), Query Frame = 2 
Query:  353 RRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERV------------------------NHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMSKWVK 925
            RR   VW RYL+AL  +PLLTKALS+GV+ GTAN+IEQTLS A F   GWV F+L G VF G  LH+WYN+L+R                          ++K +TSRVP +WGRV  Q  +D   GA+ LNCGYFA+H +  A  TG +FPLPELG  +  K+ SRY  M++ N ++WP V  LNF  VP +LRVLV+N VAVFWGYL+SKW +
Sbjct:   57 RRFSVVWGRYLNALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRALACCTRWPSLPLLLRGVKSHGQVEGNAKGVTSRVPGKWGRVSFQGMVDTIIGATLLNCGYFAVHEIFSAITTGRLFPLPELGLRIVKKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 271
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: M2Y2T8_GALSU (Peroxisomal membrane protein-related protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y2T8_GALSU)

HSP 1 Score: 90.9 bits (224), Expect = 4.810e-17
Identity = 58/182 (31.87%), Postives = 94/182 (51.65%), Query Frame = 2 
Query:  368 VWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSPAPFSLVGW-----VAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFW 898
            ++L Y+ ALE RP+LTKA++T +I+  ++++ Q L     SL  W      A    G +F+GP  H WY +LER+  S         RW   L ++ +DQ+F A+F N  +F + T  L G   ++         +  K+R ++   +  N ++WP V  + F ++P   RVL  N+V V W
Sbjct:  115 LYLSYISALEERPILTKAITTSLINAFSDLVAQWLEQRGQSLFHWNIRRTFALGFWGFIFMGPFFHNWYLILERLFPS--------GRWA-FLKKIILDQTFAAAFFNITFF-LGTGFLEGHNWHL---------IVDKLRHKFWPTMYANWRVWPLVQCITFTVIPLTFRVLWVNVVTVMW 277
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: A0A161ZSC8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161ZSC8_DAUCS)

HSP 1 Score: 88.2 bits (217), Expect = 2.290e-16
Identity = 49/176 (27.84%), Postives = 91/176 (51.70%), Query Frame = 2 
Query:  380 YLDALERRPLLTKALSTGVIDGTANMIEQTLSPA---PFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFW 898
            YL  ++ RP+LTKA+++G+I   A+   Q +SP    P+ LV  +    +G +F+GP++HFW+N + +V   + + +         L+++ M Q+     +  G+F+++    AGL G      E G  +  +++   V  +I+    WP    + F  +P +L+ LV+N  A  W
Sbjct:   77 YLGLIKSRPILTKAVTSGIIYTAADFSSQMISPQTTKPYDLVRTLRMASIGLIFVGPSMHFWFNTVSKVLPKRDIAT--------TLIKIVMGQTIFGPAMTSGFFSVN----AGLQG------ESGPEIIARLKRDLVPTMISGVMYWPFCDFVTFKFIPVHLQPLVSNSFAYLW 234
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: A0A7J6YM25_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J6YM25_9COLE)

HSP 1 Score: 85.9 bits (211), Expect = 3.620e-16
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 2 
Query:  380 YLDALERRPLLTKALSTGVIDGTANMIEQTL----SPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMS 913
            Y +AL + PL+T ++ TG +  + ++I QTL    S    +LV    F +VG  F+GP L  WY  L++   SK   S V      VL ++A+DQ  GA  L   +  +   VL  +  + F          ++++  Y  ++INN KLWPGV L+NF LVP   ++L+  +VA+ W   +S
Sbjct:    8 YTNALRKYPLITSSIQTGALMVSGDVIAQTLIEGTSFKNLNLVRTTQFGIVGLCFVGPTLTTWYRFLDKRIGSKG--SAV------VLKKLALDQ--GA--LTPIFIVLFLTVLGTVQRHNFEF------TVNEIKRNYTDILINNYKLWPGVQLINFYLVPLQYQILLVQVVALIWNIYLS 171
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: UPI001F4F59A8 (protein Mpv17-like isoform X3 n=3 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F59A8)

HSP 1 Score: 85.9 bits (211), Expect = 8.770e-16
Identity = 57/191 (29.84%), Postives = 95/191 (49.74%), Query Frame = 2 
Query:  353 RRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSP----APFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMS 913
            R + R++  Y D L + P+  +++ T ++ GT ++I QT       + F +  + +F   GG+F+GP L  W+ +L+        T    S +  V  +V +DQ   A FL         ++L     N+     L + V  K+ + Y +++I N K+WP V L+NFG VP N +V VT +V V W   +S
Sbjct:   36 RGLSRIYKVYNDLLTKHPVKVQSIQTAILCGTGDIIAQTAIEKKKLSEFDVKRFASFFAFGGIFVGPTLRMWFGILD--------TKVKGSHYAVVAQKVLLDQCIMAPFL---------LLLTLSVLNICSGKSL-AEVKEKLGADYGSILITNYKVWPAVQLINFGFVPVNFQVPVTQVVGVGWNTYLS 208
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: A0A7S3UD47_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UD47_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.160e-15
Identity = 55/183 (30.05%), Postives = 88/183 (48.09%), Query Frame = 2 
Query:  371 WLRYLDALERRPLLTKALSTGVIDGTANMIEQTL--SPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMS 913
            W RYL  LE  P+ TKA++TG ++G  +++ Q +    +   +     FTL+G  F+GPALH WY +L R+  S  L           L ++A+DQ           FA   V ++ +   +         V  K++  +   ++ N K+W     LNF LVP +L+V   N +A+FW   +S
Sbjct:   78 WKRYLHVLETHPVTTKAVTTGALNGLGDLLSQCVFEKNSCIDVNRTTRFTLLGLFFVGPALHAWYQVLNRLVPSPLLRG--------TLARLALDQ-----------FAFAPVFISSIFTILLTAEGRPQEVPGKLKQDFKETLVTNWKVWIPFQFLNFKLVPLHLQVAGANAIALFWNVYIS 241
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: A0A8J4UQV3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UQV3_9MYCE)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-15
Identity = 57/205 (27.80%), Postives = 96/205 (46.83%), Query Frame = 2 
Query:  359 MPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTL-------------------SPAPFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQS-FGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMS 913
            M R W  YL  L++ PL TK+LSTGV+ GT +++ Q +                   +         +  T VG +F GP LH+WY  L+++      T  +         ++ +DQ  F    ++C    M+T+    L        ++ + +F+ +++ ++        LWP   L+NF LVP NLRVL T++V++FW   +S
Sbjct:    1 MSRYWRGYLHLLDKYPLTTKSLSTGVLMGTGDILAQRIDFHFKQQSLNKDNNNTNDDNRFKIDYQRVLTMTSVGVLFSGPVLHYWYTSLDKIVVGSGKTVYIK--------KMLLDQGVFAPIVISCFMGIMNTIHGKSLADTE---QKIKNDLFYAMKANWM--------LWPAAQLINFSLVPPNLRVLYTSVVSIFWNIFLS 186
[Close]
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Match: UPI001F5001D1 (protein Mpv17-like isoform X1 n=3 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F5001D1)

HSP 1 Score: 85.9 bits (211), Expect = 2.210e-15
Identity = 57/191 (29.84%), Postives = 95/191 (49.74%), Query Frame = 2 
Query:  353 RRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSP----APFSLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQVAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYVTMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMS 913
            R + R++  Y D L + P+  +++ T ++ GT ++I QT       + F +  + +F   GG+F+GP L  W+ +L+        T    S +  V  +V +DQ   A FL         ++L     N+     L + V  K+ + Y +++I N K+WP V L+NFG VP N +V VT +V V W   +S
Sbjct:   88 RGLSRIYKVYNDLLTKHPVKVQSIQTAILCGTGDIIAQTAIEKKKLSEFDVKRFASFFAFGGIFVGPTLRMWFGILD--------TKVKGSHYAVVAQKVLLDQCIMAPFL---------LLLTLSVLNICSGKSL-AEVKEKLGADYGSILITNYKVWPAVQLINFGFVPVNFQVPVTQVVGVGWNTYLS 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2100.6366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZH3_ECTSI3.020e-9053.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L3N7_9PHAE1.050e-7347.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZH5_ECTSI6.270e-6551.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M2Y2T8_GALSU4.810e-1731.87Peroxisomal membrane protein-related protein n=1 T... [more]
A0A161ZSC8_DAUCS2.290e-1627.84Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A7J6YM25_9COLE3.620e-1633.52Uncharacterized protein n=1 Tax=Abscondita termina... [more]
UPI001F4F59A88.770e-1629.84protein Mpv17-like isoform X3 n=3 Tax=Schistocerca... [more]
A0A7S3UD47_9CHLO1.160e-1530.05Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A8J4UQV3_9MYCE1.240e-1527.80Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI001F5001D12.210e-1529.84protein Mpv17-like isoform X1 n=3 Tax=Schistocerca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2100contigL-elsbetiae_contig2100:9584..15309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue2.1e-75
Seed eggNOG ortholog2880.D7FZH3
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons6
Model size1161
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2100.6366.1prot_L-elsbetiae_contig2100.6366.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2100 9621..15079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.1993215-UTR-L-elsbetiae_contig2100:9583..96201622815862.1993215-UTR-L-elsbetiae_contig2100:9583..9620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2100 9584..9620 +
1691683153.1369607-UTR-L-elsbetiae_contig2100:9583..96201691683153.1369607-UTR-L-elsbetiae_contig2100:9583..9620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2100 9584..9620 +
1622815862.289964-UTR-L-elsbetiae_contig2100:15079..153091622815862.289964-UTR-L-elsbetiae_contig2100:15079..15309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2100 15080..15309 +
1691683153.2179854-UTR-L-elsbetiae_contig2100:15079..153091691683153.2179854-UTR-L-elsbetiae_contig2100:15079..15309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2100 15080..15309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815862.2155178-CDS-L-elsbetiae_contig2100:9620..97451622815862.2155178-CDS-L-elsbetiae_contig2100:9620..9745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 9621..9745 +
1691683153.1503713-CDS-L-elsbetiae_contig2100:9620..97451691683153.1503713-CDS-L-elsbetiae_contig2100:9620..9745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 9621..9745 +
1622815862.2283554-CDS-L-elsbetiae_contig2100:10044..101001622815862.2283554-CDS-L-elsbetiae_contig2100:10044..10100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 10045..10100 +
1691683153.1605244-CDS-L-elsbetiae_contig2100:10044..101001691683153.1605244-CDS-L-elsbetiae_contig2100:10044..10100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 10045..10100 +
1622815862.2416897-CDS-L-elsbetiae_contig2100:11598..118671622815862.2416897-CDS-L-elsbetiae_contig2100:11598..11867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 11599..11867 +
1691683153.1742182-CDS-L-elsbetiae_contig2100:11598..118671691683153.1742182-CDS-L-elsbetiae_contig2100:11598..11867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 11599..11867 +
1622815862.2556424-CDS-L-elsbetiae_contig2100:12407..124931622815862.2556424-CDS-L-elsbetiae_contig2100:12407..12493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 12408..12493 +
1691683153.1846619-CDS-L-elsbetiae_contig2100:12407..124931691683153.1846619-CDS-L-elsbetiae_contig2100:12407..12493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 12408..12493 +
1622815862.2660937-CDS-L-elsbetiae_contig2100:13509..137051622815862.2660937-CDS-L-elsbetiae_contig2100:13509..13705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 13510..13705 +
1691683153.1932404-CDS-L-elsbetiae_contig2100:13509..137051691683153.1932404-CDS-L-elsbetiae_contig2100:13509..13705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 13510..13705 +
1622815862.2781138-CDS-L-elsbetiae_contig2100:14917..150791622815862.2781138-CDS-L-elsbetiae_contig2100:14917..15079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 14918..15079 +
1691683153.2054904-CDS-L-elsbetiae_contig2100:14917..150791691683153.2054904-CDS-L-elsbetiae_contig2100:14917..15079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2100 14918..15079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2100.6366.1

>prot_L-elsbetiae_contig2100.6366.1 ID=prot_L-elsbetiae_contig2100.6366.1|Name=mRNA_L-elsbetiae_contig2100.6366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MVTFHALGCLAALVFSTTSGAFVVASPRRRAGVHHPTRRCQGRRGVAAFG
TVHASMVHEAVSRARPALPGSALRLRGGGGGSAAAASTASIDGKGKGEGE
GNTKGRRMPRVWLRYLDALERRPLLTKALSTGVIDGTANMIEQTLSPAPF
SLVGWVAFTLVGGVFIGPALHFWYNLLERVNHSKALTSRVPSRWGRVLVQ
VAMDQSFGASFLNCGYFAMHTVVLAGLTGNVFPLPELGSSVFHKVRSRYV
TMIINNAKLWPGVSLLNFGLVPKNLRVLVTNLVAVFWGYLMSKWVKT*
back to top

mRNA from alignment at L-elsbetiae_contig2100:9584..15309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2100.6366.1 ID=mRNA_L-elsbetiae_contig2100.6366.1|Name=mRNA_L-elsbetiae_contig2100.6366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5726bp|location=Sequence derived from alignment at L-elsbetiae_contig2100:9584..15309+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCGTCGCGCTGGTAGGGCTGCTGTTGAGGACACAATGGTGACTTTCC
ACGCATTGGGATGCCTGGCTGCACTCGTATTCTCCACAACGAGTGGAGCT
TTCGTCGTAGCTTCGCCCCGGCGGCGTGCAGGTGTTCATCATCCAACACG
ACGATGTCAAGGGTAAGTGGTATCGTGAGGGAAAGGTCTGCTGCTACCTA
CCGCCCCGAGAGTCAGAGAGAGAGAGAGAGCGGGAACACGTGCTGTCAGG
TTATTTCTCTTTTCATAAGTTCCCATGCGCCGTTGCATCGTGACTCTGAA
GGTTAAAGCTTTCGTGTTATTTCGAGCACCAGCATCGTACGTAAGCATGC
TGCTGTGTCTGTCGACGTTGGGTGTTTGATGAGTATCTGCACTGCTGCGT
TCGACAAGTAACGACCTTCCACCCCACCCCAATGGCTTTCTCGCTTCAAT
GGGACCTGCAGGCGGCGCGGAGTCGCGGCATTTGGAACCGTGCATGCAAG
TATGGTGCATGAAGCAGGTGCGAGACGGCCCAATTTGATCAAATAAAGCG
TACCTACATAACTATATCTAAACGTTGTAGACACACCACCAGCCGCATTA
TAGATTCTATTCTAATTAGTATACGTTTCAGTAGGAAGCGCACGTTCATA
CCTCCCGCGCGTACCTCGTGTCCATGTCGTGCGCAGCCCTAGCAACCTAA
ACAACAGGGACCGCGGTCCTCCCATTCCGGTTAGCGACGATAACTATTGT
AGGGGCTGGCTGTTTCAGGCCGAATTGAACGGAAACGTAGCGGCGAGAGG
CGGAAGAGGAGGGAGAGTACGGACGGCGGTGCCTGCTGTGTATGTCGACC
AGATGTCGTTGTCCTACATTTTGTAAAATAAATGAGCAGGTTGTTTACGT
ACATCCAACATGCATACATTATCCCCAGCCCAACACGATTTTGTCAGATG
CACATAATACCGCGCGGTTGCATCACTTTTTGGCAGTTCAAACCTATTCG
CCGCGATTTTTTGCGTCGAAAAGAGAACCGGAAATTGATTGGTAAAATCA
ATGATCGCCCGCTCCAGGTCCAAGTACACAGCAGCAGCAGCAGCAGCAGC
AGCAGTTGGCGGGGACGGTATTTTTTGTACGCATGACGGCCGGGATATTC
GTGGATTGCTCGCTCTTACGCGGCCTATCGAAAATCTCGACAGAGAAATA
CTTCTACATACATATTCGCGTGTCCACCGTCTATCTACGCTCTAGTTAGT
CACCCCATTTCTCTTCCTGTGCACCAGCTCTATCTGGTCTCTTTAAAAAT
ATTGTTTCCCCGCCCTGGCCGCCCAAAAATCCAAATTTCCACGTGCTCGG
GGGCTCACGCGCGCCGGAGAGAGGTTGGAACATTCCTAGATTTTTTCTAC
CCGTCGCCGCAGAGAAAATAAGCTCGTGTTTTGTATTGTGTATGTTTGGT
GTGTGAGCTGTCCGCGTAACTCCTCGCGTATACAATATGGAGAAGTATGT
AATTAGCGCTCATCGTCGAGCTGATGTCGGTGTCCTGCAGATACATATCA
TATGTCCATGAGCGTTAATTGTTCATTTTAGCGCGTGTTCGTGTGTGTGT
AGCCAACTGCTCGAAATCGAAATACGGTTGTAAATACCACCTACTCAATT
ATCCATTCTTTTTTACGCATCCACATTCAAATCTAGATACTGCCGTGTGA
AGTGGTGAAAGCATTGTGAGCGCGAGCAGAGGTAGCCGCTATGTACGTAT
GCTTGGTTCCAAGGACAAATAGATTAAGTGCTTTCCCTCGCGCGGTACCC
AGGAGAGCCACGTCGTCTGAACCACTTATGTATGTACGTATGTACTCGGA
GTACTATATACTACTACAGCAGTAGTAGAAGAGCTTCGAAACAGCCTGAC
CTATTTCTCGTTTTTTTTTAATGCCATCCCATGCGTTCCTGAGAGAGAAA
ATATCGGCCTTTTCGTCGCCCGTCCGCGCCTCTGCTGTGCCCCTCCTGCT
CGGCTCCAATCTCAGTTTCCCGTGCGCGCCCAGCGCTGCCCGGGAGTGCC
TTGCGGCTCCGCGGCGGCGGCGGCGGCAGTGCCGCCGCCGCCAGCACCGC
CAGCATCGACGGCAAGGGCAAGGGCGAGGGCGAGGGCAACACCAAGGGAA
GAAGGATGCCCAGGGTGTGGCTGCGGTACCTGGACGCCCTCGAGCGAAGG
CCGCTGCTCACCAAGGCTCTGTCGACGGGGGTCATCGACGGCACGGCCAA
CATGATCGAGCAGACGCTTAGCCCGGCCCCTTTTGTGAGTTTGGGGTTGG
ATTTGGGTTGGTGGGAAAACGTGTGTCAATTCAACTGGTGGTGCCTTCTA
CACAGGATACTTGAGACTTGGCGTTCTGCGTAAAAGAAGGAATGCCGCTG
CGACGTTGGAACGATGCGCGTGTCCACCGCTGGCACTGCATAGTTTTTTT
TTCTTTCTTTCCATGGCAAATTGAACAGCACTTCCACCGTTGTAAAAACT
AAAACTCCTCGATGAGTTGCAGCCGCCAAGCTAGGCCCAAAGGAAGGCGC
TTGTGCTCGCGAATTATTTGTCCTGGAGGAAGGTGCTCCCACCCCCTCGT
TGGTTGGTGTCGCACGTACATACACACGTAGGTAGTTTTTTTTTTTTTTT
TCCCTCCCAGTATTGGCATATTTGTCGTCTGCCCCACTAGCCCCCTTCCT
CCACTACGATTATGTAGCTAGACGACCCAACCGGGGTAGCATGTGTCGAT
GATGTCCCACGTCTCTGTAAATCGGTGAACCGCTTGCTGCTTTCTTGCCG
AACGTGTTTTCGACCCGGCCCCAGAGTTTGGTGGGTTGGGTTGCTTTCAC
TCTCGTCGGAGGCGTGTTCATCGGGCCGGCCCTCCACTTCTGGTACAACC
TTCTCGAGAGGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCTTCAC
ATTAAAAACCGTTCCGATCTCTCTATCCAGTACACCTCCATGAGTCCGTA
CTCATCCTTAGGTAAAGGGTATATAGAGGTTTAGCTTTCCCAGCTTTACC
TCGTGTGTCTTCTAAATAAAGTTAATTGTATATTTGGAGCATTATCTATT
TGTAAGCAACTTAGAATCTCACAGCTTTATTTATAAAGTAAGGTTTTGTA
GGGTAGTTGTTTTCTGGGCTCATCCAGCACTGACGCGGTCGATTCCCGTG
GTCACAGGATAACTTACCTTAAAAAAAGGGTAAATTGTAGACTACTGAAA
ATATGTTTTTTTTTGTCGTTCTCTCTTTTCTTCCCATTATTGGCTGATTC
GTCGTCTGCCCCACTAGCCCCCCTCCTCCACCACGACTGGCTAGGCGACC
TAACCGATGTGCGCGGCTGTAATTGGCCGTAAGCGGTACGTACTTCCGAG
CACGTTTTTTCTGTGCCGTGGTTTGTCTGTAAGACCTCGGCGCACTTTTC
GGCCTGCGGGCCACGAAAAGGGGTTTAAAGCCCACTGAAACCTTCTCCTT
GTCCGCGCTTGACTTGGTGGTCGTCGGTCTAGTGTGGGTTGGAAACCCCG
CGAATAATTCCCGGAATAAATACTTGTCCTGAGGTCTGAGGATGTGCCGC
TGAAGGTTAGGTAAACAGCCTCCTTCCCCCGCTCCTCCGTCGGTGTCTTG
AGACCGGCGAGCTACCTACCGTATACGACACAAGATAACACACCCCCTGG
GCCGATTTTCAAAGCTCGGCTACTCCGCAACGACCACTATTTTAGTACCA
AACGACACGTTTTCGAACAGCTCTTGATGAGATCTTTCCAACGCCGCCCT
TTTCGGGACTGACACTCTTCTCGCTGTCGAGTACTTGAGCCTTGAAAACC
GGTCCAGGGGGTGTGTTATCTTCTGTCGTACATACACGGTACCAACACAC
CGTGCGCCGCACGCACTGCTCCCCAGGGTGAACCACTCGAAGGCGTTGAC
GTCCAGGGTGCCCAGCAGGTGGGGGCGAGTCTTGGTGCAGGTCGCGATGG
ACCAGTCGTTCGGGGCGTCCTTCTTGAACTGCGGCTACTTCGCGATGCAC
ACGGTCGTCTTGGCGGGGCTGACGGGGAACGTGTTCCCGCTCCCGGAGCT
GGGGTCGTCCGTCTTCCATAAGGTTCGCTGATTATTCCCTCGCGAAACGC
CCGTGCTACATATGTGTTTGCGGACTTATTGCGCCCAAGAAGCATGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCATTGCTCTAAAGATCA
GTTCCGACCCCTCTTTTCAGTTCTCAGTACCTTCCTCTGTCCATACCCCT
CTAGCGCATGATGCGGTCGATCCCGTGGTCACAGGTTAAATATAAGTAAC
TTGACTTATACAAAGGTGTACCCCAATCAGTACCCAGTAACTCTTCCTCT
GTCCGTACACATCCAGCGCATGATGCGGTCGATTTTCCGTGGTCACAGGC
TAACTTACCTTTTAAAAGGCATGTGGGTTACGTATGTAGGAGTATTAAGA
TGTTACTGAAATGAAAATGTCTTCGGGGGCTTTTTAATTAATGCATACAA
ATGTCAGCAGCCTACGTCCAGTCTGTGAAAAAAGTTTTTTGGGGCTTTAA
GAGCTTTTCGTTTCGTGGGGCACGGCCGCCGACTAGGTGCCTCTCTGGCG
CGTTCGTAGATTGCAGGGTTCGACATCGCGCAAGCTATCATATTGGAAGG
ACGGCGCGGACCTCTATTTTGTTACCCTTCGCCCATGTGCTTGCCCGGCA
TGCCTGCTTGTGCGCGGATAGTTTTTTTTTGCGCGGGTGTTGAACAGCTG
CTCTGTGCGTACCGTTGAGGTTAGTGGGGAGACCTAAATCGGGCATCATC
GCCAGCTGTGCTGATGATACACTCGCAAAAGCTGGGAATCCAACTGCTTC
TTCTCCCGTTTTTTCATTGGATCTTCTCACGCAACGCCTTCCTCCTCAGA
GCACACAAAAGTGCGACCGGGTGCATACATAATTAACAGTACAGTTGTAG
CCTTCGCAGGCTTTACTGGAATAAACCATATGGGATAAGAGTATGGAAAC
GGCTGATGGGGGGTCGGTGTGGGGTCAGGGTTAGGGTTAGGGTTACGGAA
CCCCTGTAAATTATTTGCTAGGTATTAGGCAGGAGTTCTTCGCGAAAAGG
CGGTCCATAATTAGACTGCATGAATTGCATCATAGCTCGATGTTCTTCGG
AAACTTCCCCACGTTTTTGCCCCCTTCCAGCCCAGCAACACTACCCAGTA
TAAAGGTTGATGCGAGATGCCGAATTTTCCAGGATTTTTCCCTCCGCTTC
CGTTCCTTTTCTTTTTTATGGTCGGCTTATCCAGGTGAGGAGTCGGTATG
TGACGATGATCATCAACAACGCCAAGCTGTGGCCCGGGGTTAGCCTCTTG
AATTTCGGGCTGGTTCCCAAGAACTTGAGAGTGCTGGTGACCAATTTAGT
CGCGGTTTTCTGGGGGTACCTCATGTCCAAGTGGGTCAAGACCTAACTGC
CTGCCTCGACCGACCTCCGGCAAGCGCGGCGCAACCCGCGCGATATTTCT
GTACCGATATAGACCGGGTTGCTACTACTACTGCTGTGGGTTAGTTCGGC
CGCGTAGGATACATGGTCTGGCCGCCTTGCCGATCTTCTTGGATTTCGCG
ATTTGATAGTGCCTGCAGCGGCATGTCACATGAAGCACGATCTCTTGTGA
CACGATGGGTTTTAACTTTTGTTGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2100:9584..15309+

>mRNA_L-elsbetiae_contig2100.6366.1 ID=mRNA_L-elsbetiae_contig2100.6366.1|Name=mRNA_L-elsbetiae_contig2100.6366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig2100:9584..15309+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACTTTCCACGCATTGGGATGCCTGGCTGCACTCGTATTCTCCAC
AACGAGTGGAGCTTTCGTCGTAGCTTCGCCCCGGCGGCGTGCAGGTGTTC
ATCATCCAACACGACGATGTCAAGGATGGTGACTTTCCACGCATTGGGAT
GCCTGGCTGCACTCGTATTCTCCACAACGAGTGGAGCTTTCGTCGTAGCT
TCGCCCCGGCGGCGTGCAGGTGTTCATCATCCAACACGACGATGTCAAGG
GCGGCGCGGAGTCGCGGCATTTGGAACCGTGCATGCAAGTATGGTGCATG
AAGCAGGCGGCGCGGAGTCGCGGCATTTGGAACCGTGCATGCAAGTATGG
TGCATGAAGCAGTTTCCCGTGCGCGCCCAGCGCTGCCCGGGAGTGCCTTG
CGGCTCCGCGGCGGCGGCGGCGGCAGTGCCGCCGCCGCCAGCACCGCCAG
CATCGACGGCAAGGGCAAGGGCGAGGGCGAGGGCAACACCAAGGGAAGAA
GGATGCCCAGGGTGTGGCTGCGGTACCTGGACGCCCTCGAGCGAAGGCCG
CTGCTCACCAAGGCTCTGTCGACGGGGGTCATCGACGGCACGGCCAACAT
GATCGAGCAGACGCTTAGCCCGGCCCCTTTTTTTCCCGTGCGCGCCCAGC
GCTGCCCGGGAGTGCCTTGCGGCTCCGCGGCGGCGGCGGCGGCAGTGCCG
CCGCCGCCAGCACCGCCAGCATCGACGGCAAGGGCAAGGGCGAGGGCGAG
GGCAACACCAAGGGAAGAAGGATGCCCAGGGTGTGGCTGCGGTACCTGGA
CGCCCTCGAGCGAAGGCCGCTGCTCACCAAGGCTCTGTCGACGGGGGTCA
TCGACGGCACGGCCAACATGATCGAGCAGACGCTTAGCCCGGCCCCTTTT
AGTTTGGTGGGTTGGGTTGCTTTCACTCTCGTCGGAGGCGTGTTCATCGG
GCCGGCCCTCCACTTCTGGTACAACCTTCTCGAGAGAGTTTGGTGGGTTG
GGTTGCTTTCACTCTCGTCGGAGGCGTGTTCATCGGGCCGGCCCTCCACT
TCTGGTACAACCTTCTCGAGAGGGTGAACCACTCGAAGGCGTTGACGTCC
AGGGTGCCCAGCAGGTGGGGGCGAGTCTTGGTGCAGGTCGCGATGGACCA
GTCGTTCGGGGCGTCCTTCTTGAACTGCGGCTACTTCGCGATGCACACGG
TCGTCTTGGCGGGGCTGACGGGGAACGTGTTCCCGCTCCCGGAGCTGGGG
TCGTCCGTCTTCCATAAGGGTGAACCACTCGAAGGCGTTGACGTCCAGGG
TGCCCAGCAGGTGGGGGCGAGTCTTGGTGCAGGTCGCGATGGACCAGTCG
TTCGGGGCGTCCTTCTTGAACTGCGGCTACTTCGCGATGCACACGGTCGT
CTTGGCGGGGCTGACGGGGAACGTGTTCCCGCTCCCGGAGCTGGGGTCGT
CCGTCTTCCATAAGGTGAGGAGTCGGTATGTGACGATGATCATCAACAAC
GCCAAGCTGTGGCCCGGGGTTAGCCTCTTGAATTTCGGGCTGGTTCCCAA
GAACTTGAGAGTGCTGGTGACCAATTTAGTCGCGGTTTTCTGGGGGTACC
TCATGTCCAAGTGGGTCAAGACCTAAGTGAGGAGTCGGTATGTGACGATG
ATCATCAACAACGCCAAGCTGTGGCCCGGGGTTAGCCTCTTGAATTTCGG
GCTGGTTCCCAAGAACTTGAGAGTGCTGGTGACCAATTTAGTCGCGGTTT
TCTGGGGGTACCTCATGTCCAAGTGGGTCAAGACCTAA
back to top