mRNA_L-elsbetiae_contig210.6358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6358.1
Unique NamemRNA_L-elsbetiae_contig210.6358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:6545..7149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size605
Cds size504
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.7508614-UTR-L-elsbetiae_contig210:6544..66451622815861.7508614-UTR-L-elsbetiae_contig210:6544..6645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 6545..6645 +
1691683152.8770845-UTR-L-elsbetiae_contig210:6544..66451691683152.8770845-UTR-L-elsbetiae_contig210:6544..6645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 6545..6645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.7604034-CDS-L-elsbetiae_contig210:6645..71491622815861.7604034-CDS-L-elsbetiae_contig210:6645..7149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 6646..7149 +
1691683152.886057-CDS-L-elsbetiae_contig210:6645..71491691683152.886057-CDS-L-elsbetiae_contig210:6645..7149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 6646..7149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6358.1prot_L-elsbetiae_contig210.6358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 6646..7149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6358.1

>prot_L-elsbetiae_contig210.6358.1 ID=prot_L-elsbetiae_contig210.6358.1|Name=mRNA_L-elsbetiae_contig210.6358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MLLLLLLPLLPPWSCVDTSSALACAADGRGCLSRLIRPLPVPATPGEIAT
PSTLTAAVQMPLAFPADDSRRMDERPSPVTTGVSAAAWTRGDESGARTGP
TWLLPPLRRLELPMALLLLVVARWREGWAWSFPRPPASRRLVVPLLLLLL
PPPPPPPKLTGGSVRDPL
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mRNA from alignment at L-elsbetiae_contig210:6545..7149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6358.1 ID=mRNA_L-elsbetiae_contig210.6358.1|Name=mRNA_L-elsbetiae_contig210.6358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=605bp|location=Sequence derived from alignment at L-elsbetiae_contig210:6545..7149+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCGGATGCTTCTGCCGCCGCTTGGTCGTCGGGTTCCAGGAGAACAACA
TCGTTGTCAATGGCTTGACGGGCTCGCTTGGCTCTCCTCCGATTCCTGTT
GATGTTGTTGTTGCTGCTGCTGCCGCTGCTGCCCCCTTGGTCGTGTGTGG
ATACATCATCAGCGCTTGCCTGTGCAGCCGATGGAAGAGGGTGCCTCTCT
CGCTTGATTCGTCCGTTGCCGGTTCCGGCCACGCCGGGTGAGATTGCCAC
CCCCTCTACCTTGACAGCGGCGGTGCAAATGCCATTGGCGTTTCCTGCCG
ATGACTCGCGACGAATGGATGAGCGGCCCTCGCCGGTGACAACCGGAGTT
TCGGCTGCGGCGTGGACACGCGGAGATGAATCGGGCGCACGAACAGGCCC
GACTTGGTTGTTGCCGCCACTTCGTCGATTGGAGCTGCCCATGGCACTGC
TACTGCTAGTTGTTGCCCGCTGGAGGGAAGGTTGGGCGTGGTCCTTCCCG
CGTCCACCTGCCTCCAGGAGGCTAGTGGTACCACTGCTGCTGCTGCTGCT
GCCGCCGCCGCCGCCGCCGCCAAAACTAACGGGTGGCAGTGTCCGTGACC
CGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:6545..7149+

>mRNA_L-elsbetiae_contig210.6358.1 ID=mRNA_L-elsbetiae_contig210.6358.1|Name=mRNA_L-elsbetiae_contig210.6358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig210:6545..7149+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTTGTTGCTGCTGCTGCCGCTGCTGCCCCCTTGGTCGTGTGTGGA
TACATCATCAGCGCTTGCCTGTGCAGCCGATGGAAGAGGGTGCCTCTCTC
GCTTGATTCGTCCGTTGCCGGTTCCGGCCACGCCGGGTGAGATTGCCACC
CCCTCTACCTTGACAGCGGCGGTGCAAATGCCATTGGCGTTTCCTGCCGA
TGACTCGCGACGAATGGATGAGCGGCCCTCGCCGGTGACAACCGGAGTTT
CGGCTGCGGCGTGGACACGCGGAGATGAATCGGGCGCACGAACAGGCCCG
ACTTGGTTGTTGCCGCCACTTCGTCGATTGGAGCTGCCCATGGCACTGCT
ACTGCTAGTTGTTGCCCGCTGGAGGGAAGGTTGGGCGTGGTCCTTCCCGC
GTCCACCTGCCTCCAGGAGGCTAGTGGTACCACTGCTGCTGCTGCTGCTG
CCGCCGCCGCCGCCGCCGCCAAAACTAACGGGTGGCAGTGTCCGTGACCC
GCTCATGTTGTTGTTGCTGCTGCTGCCGCTGCTGCCCCCTTGGTCGTGTG
TGGATACATCATCAGCGCTTGCCTGTGCAGCCGATGGAAGAGGGTGCCTC
TCTCGCTTGATTCGTCCGTTGCCGGTTCCGGCCACGCCGGGTGAGATTGC
CACCCCCTCTACCTTGACAGCGGCGGTGCAAATGCCATTGGCGTTTCCTG
CCGATGACTCGCGACGAATGGATGAGCGGCCCTCGCCGGTGACAACCGGA
GTTTCGGCTGCGGCGTGGACACGCGGAGATGAATCGGGCGCACGAACAGG
CCCGACTTGGTTGTTGCCGCCACTTCGTCGATTGGAGCTGCCCATGGCAC
TGCTACTGCTAGTTGTTGCCCGCTGGAGGGAAGGTTGGGCGTGGTCCTTC
CCGCGTCCACCTGCCTCCAGGAGGCTAGTGGTACCACTGCTGCTGCTGCT
GCTGCCGCCGCCGCCGCCGCCGCCAAAACTAACGGGTGGCAGTGTCCGTG
ACCCGCTC
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