mRNA_L-elsbetiae_contig210.6357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig210.6357.1
Unique NamemRNA_L-elsbetiae_contig210.6357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 2.670e-91
Identity = 176/311 (56.59%), Postives = 202/311 (64.95%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTIPGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYGDG-ETPTMAPTT----------VMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMCSNGVPGIESPKSACCVAACGQCGGIGCATVALDLGLGSAECCEGTILLANEPCGEAPCVVGDGVLETESPASPTPTTTXXXXXXXXXXXVATPSGECEGDPVAAYEQCGGNTWKGSTCCEDGLECVAMGKSACYSQCRRI 901
            +L++L W   PED EYVGCYAD + DRV+   ++   +T  VCREHC+DK APYYGTQ+++ECWCGTSDDEADYERHG G C+M C GD +VACGGYD+YSLFK+ +G +TPTMAP T          V+                                      S CSNGVPGIE+ K ACCVAACGQCGG GC+TVALDLGLGS ECCEG +L AN PCGEAPCV                   XXXXXXXXXXX   P+GEC GDPV A+EQCGG+ W GSTCCE+GLECV MGKS CYSQCR I
Sbjct:  887 NLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNGGKTPTMAPVTDSPDTSTMAPVITREAPTTPRVTRSPVRSEEPTAAATSAPRSPGGSMPTTSTCSNGVPGIETSKGACCVAACGQCGGAGCSTVALDLGLGSDECCEGAVLDANRPCGEAPCVXXXXXXXXXXXXXXX----XXXXXXXXXXXXXAPTGECSGDPVEAWEQCGGDGWTGSTCCEEGLECVVMGKSTCYSQCRPI 1193
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 3.120e-91
Identity = 202/315 (64.13%), Postives = 235/315 (74.60%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTIPGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYGDG-------------ETPTMAPTTVMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMCSNGVPGIESPKSACCVAACGQCGGIGCATVALDLGLGSAECCEGTILLANEPCGEAPCVVGDGVLETESPA-SPTPTTTXXXXXXXXXXXVATPSGECEGDPVAAYEQCGGNTWKGSTCCEDGLECVAMGKSACYSQCRRID 904
            +L++L W   PED EYVGCY D++ DRV+S  ++   +T AVCREHC+DK APYYGTQ+++ECWCGTSDD+ADYERHG G C+M C GD +VACGGYD+YSLFKY +G             +TPTMAPT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       S CSNGVPGIE+ K ACCVAACGQCGG GC+TVA DL LGS ECCE  +L AN PCGEAPCV+G      + PA +P+P T    XXXXXXX    P+GEC G+PV A+EQCGG+ W GSTCCE+GLECV MGKS CYSQCR ++
Sbjct: 1233 NLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAPVTDSPDTPTMAPTATX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSMPTTSTCSNGVPGIETSKGACCVAACGQCGGDGCSTVASDLELGSDECCETAVLDANRPCGEAPCVIGG-----DFPAPTPSPETAAPVXXXXXXXVSTAPTGECSGEPVEAWEQCGGDGWTGSTCCEEGLECVFMGKSTCYSQCRPME 1540
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 3.570e-85
Identity = 227/556 (40.83%), Postives = 268/556 (48.20%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTI-PGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYGDGETPTMAPTTVMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMCSNGVPGIESPKSACCVAACGQCGGIGCATVALDLGLGSAECCEGTILLANEPCGEAPCVVGDGVLETESPASPTPTTTXXXXXXXXXXXVATPSGECEGDPVAAYEQCGGNTWKGSTCCEDGLECVAMGKSACYSQCRRIDDTGSATPSPAGTTEPVMPVAPPXXXXXXXXXXXXAEXTRAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTDDDCMVKIIEGEDLAVTGDWKVVDDPDASGGRYIVWEGLSEGANNQDAEDGDIISTTIDIATPGTYRFKWLMRQPSGVESDKGNDSWLNFPDADRFGPEGSNASYGTFVKVYGWATGGIFEYSGTAEDAKHDHTQIAVEFAQAGQYVMEIAGRSQGHEIDQIILFGDTLSVNDAAAGC 1666
            DL+K+  P+EP   EYVGC+ADD EDR++  ++ + P +T AVCR +C ++ A +Y TQY  ECWCG S+DE DY+RHG G+C  GC GD +VACGG+D+++LFK+ DG    +APT    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                           +PTPT                                                                                                                                              +DCMV IIE EDL V GDW++V D  ASGG YI WEGLSE  NN D  DGDIIST++ I T GTY FKW MRQP GVESDK NDSWLNFPDADRFGP G++ SYGTFVKVYG A  G+F+Y GTAE+   DHTQIA+EFA AG+Y MEI GRS GH+IDQI+LFGD+L V+DA AGC
Sbjct:  519 DLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF-DGIAEPIAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAPTPT----------------------------------------------------------------------------------------------------------------------------------------------NDCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNSDPADGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPAGTSKSYGTFVKVYGNAADGVFKYQGTAEEENGDHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGDSLKVDDAVAGC 905
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.350e-84
Identity = 180/301 (59.80%), Postives = 204/301 (67.77%), Query Frame = 2 
Query:  770 CEGDPVAAYEQCGGNTWKGSTCCEDGLECVAMGKSACYSQCRRIDDTGSATPSPAGTTEPVMPVAPPXXXXXXXXXXXXAEXTRAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTDDDCMVKIIEGEDLAVTGDWKVVDDPDASGGRYIVWEGLSEGANNQDAEDGDIISTTIDIATPGTYRFKWLMRQPSGVESDKGNDSWLNFPDADRFGPEGSNASYGTFVKVYGWATGGIFEYSGTAEDAKHDHTQIAVEFAQAGQYVMEIAGRSQGHEIDQIILFGDTLSVNDAAA--GC 1666
            C G PV AYEQCGG  W GSTCC DG +C  M +  CY+QCR        TPSP  TT P  PVA                              XXXXXXXXXXXXXXXXXXXXX   PT   CMV  +E EDL V GDW+VV+D DASGG+YI WEGLSEG NN D  DGDI+S +I + T GTY FKWLMRQP GVESDKGND+WLNFPDA R+GP G+  SYGTF+KVYG AT G FEYSGT ED+ H HTQIAVEF +AG+Y MEI+GRS G +IDQI++FG+ LSV++A A  GC
Sbjct:  499 CSGTPVEAYEQCGGKDWTGSTCCMDGYDCTQMVEDGCYAQCRPSVTVEPITPSPVSTTRP--PVA--------------------------LSTSXXXXXXXXXXXXXXXXXXXXXVSEPTSG-CMVVRMEAEDLPVLGDWRVVNDADASGGKYITWEGLSEGQNNGDPADGDIMSASIQVPTAGTYSFKWLMRQPDGVESDKGNDAWLNFPDAKRYGPAGTQESYGTFIKVYGRATNGDFEYSGTGEDS-HGHTQIAVEFEEAGEYAMEISGRSHGLQIDQILVFGEDLSVDEAVANTGC 769
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 7.720e-83
Identity = 240/557 (43.09%), Postives = 281/557 (50.45%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTI-PGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYGDGETPTMAPTTVMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMCSNGVPGIESPKSACCVAACGQCGGIGCATVALDLGLGSAECCEGTILLANEPCGEAPCVVGDGVLETESPASPTPTTTXXXXXXXXXXXVATPSGECEGDPVAAYEQCGGNTWKGSTCCEDGLECVAMGKSACYSQCRRIDDTGSATPSPAGTTEPVMPVAPPXXXXXXXXXXXXAEXTRAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTDDDCMVKIIEGEDLAVTGDWKVVDDPDASGGRYIVWEGLSEGANNQDAEDGDIISTTIDIATPGTYRFKWLMRQPSGVESDKGNDSWLNFPDADRFGPEGSNASYGTFVKVYGWATGGIFEYSGTAEDAKHDHTQIAVEFAQAGQYVMEIAGRSQGHEIDQIILFGDTL-SVNDAAAGC 1666
            DL+K+  P+EP   EYVGC+ADD EDR++  ++ + P +T  VCR +C ++ A +Y TQY  ECWCG S+DE DY+RHG G+C  GC GD +VACG      ++K+ +   P +A T V                                            G       K                                                  DGV E   P +PTP     XXXXXXX    TP      +PVAA                                                               XXXXXXXX  X     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +DCMV IIE EDL V GDW++V D  ASGG YI WEGLSE  NN+D  DGDIIST++ I T GTY FKW MRQP GVESDK NDSWLNFPDADRFGP  ++ SYGTFVKVYG A  G+F+Y GTAED    HTQIA+EFA AG+Y MEI GRS GH+IDQI+LFG +  +  DA AGC
Sbjct:   97 DLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKH-ESFQPFLAVTLV------------------------------------------PGGFDAFNLFKF-------------------------------------------------DGVAE---PVAPTP---GPXXXXXXXVSALTP------EPVAA--------------------------------------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNDCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNRDPGDGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPADTSKSYGTFVKVYGNAADGVFKYQGTAEDEDGAHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGGSFHTAEDAVAGC 487
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.130e-28
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:    5 LFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTI-PGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFK 313
            L+K+  P+EPE  EYVGC+ADD +DR++ +++   P +T AVCR +C   GA +Y TQY  ECWCGTSDD+ DY+RHG G+C   C GD + ACGG+DS++LFK
Sbjct:  564 LYKITEPTEPEGEEYVGCFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFGAHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFK 667
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.860e-26
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDP----EYVGCYADDEEDRVMSHKVTI-PGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYGDGE 328
            DL+K+  P E E      EYVGC+ADD EDR++ +++   P +T  VCR +C    A +Y TQY  ECWCG S+DE DY+RHG+G+C M C GD +  CGG+++++L+K  D +
Sbjct:   86 DLYKIAEPKEVEXXXXXXEYVGCFADDPEDRLLGNEIKHQPDMTQVVCRVYCEGYDAQFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYKNKDNQ 199
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.200e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTIP-GITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKY---GDGETPT 337
            DL+KL  P   +  EYVGC+ADD+EDR +++K+     +T  VCR +C   G+ +Y TQY  ECWCG +DD  +Y+RHG G C  GC GD ++ACGGY ++SLF+Y    D ET T
Sbjct:  406 DLYKLDGPMPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSSFYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLDDDDDETAT 521
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.820e-25
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 2 
Query:    2 DLFKLWWPSEPEDPEYVGCYADDEEDRVMSHKVTIPGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFKYG 319
            DL+KL     P+  EYVGC++D  E RVM   +   G+TT +CR+HC    A YY TQY  EC+CG S D  DYE HG G C+M C GD   ACGGY ++SL+++G
Sbjct:  131 DLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFG 236
[Close]
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.940e-23
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 2 
Query:   44 EYVGCYADDEEDRVMSHKVTI-PGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHGAGNCYMGCDGDESVACGGYDSYSLFK 313
            EYVGC+ADD EDR++ +++   P +T AVCR +C    A +Y TQY  ECWCG S+DE DY+RHG+G+C M C GD    CGG D+++L+K
Sbjct:  358 EYVGCFADDPEDRLLGNEIKYQPDMTQAVCRTYCEGYDAHFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDPGTVCGGNDAFNLYK 448
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig210.6357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ37_9PHAE2.670e-9156.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI3.120e-9164.13EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED7_ECTSI3.570e-8540.83EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FU28_ECTSI1.350e-8459.80EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE7.720e-8343.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN72_9PHAE3.130e-2854.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLD0_9PHAE1.860e-2646.49WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXK6_ECTSI2.200e-2549.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGP4_ECTSI5.820e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LED5_ECTSI3.940e-2352.75EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig210contigL-elsbetiae_contig210:239..4622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.8
Seed ortholog evalue3.2e-79
Seed eggNOG ortholog2880.D7FU28
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons6
Model size2569
Cds size1587
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig210.6357.1prot_L-elsbetiae_contig210.6357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig210 324..3725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.7950249-UTR-L-elsbetiae_contig210:238..3231622815861.7950249-UTR-L-elsbetiae_contig210:238..323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 239..323 +
1691683152.8955505-UTR-L-elsbetiae_contig210:238..3231691683152.8955505-UTR-L-elsbetiae_contig210:238..323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 239..323 +
1622815861.8810325-UTR-L-elsbetiae_contig210:3725..46221622815861.8810325-UTR-L-elsbetiae_contig210:3725..4622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 3726..4622 +
1691683152.97039-UTR-L-elsbetiae_contig210:3725..46221691683152.97039-UTR-L-elsbetiae_contig210:3725..4622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig210 3726..4622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815861.8078396-CDS-L-elsbetiae_contig210:323..4131622815861.8078396-CDS-L-elsbetiae_contig210:323..413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 324..413 +
1691683152.909821-CDS-L-elsbetiae_contig210:323..4131691683152.909821-CDS-L-elsbetiae_contig210:323..413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 324..413 +
1622815861.818843-CDS-L-elsbetiae_contig210:889..9981622815861.818843-CDS-L-elsbetiae_contig210:889..998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 890..998 +
1691683152.9220536-CDS-L-elsbetiae_contig210:889..9981691683152.9220536-CDS-L-elsbetiae_contig210:889..998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 890..998 +
1622815861.834465-CDS-L-elsbetiae_contig210:1346..17271622815861.834465-CDS-L-elsbetiae_contig210:1346..1727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 1347..1727 +
1691683152.931449-CDS-L-elsbetiae_contig210:1346..17271691683152.931449-CDS-L-elsbetiae_contig210:1346..1727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 1347..1727 +
1622815861.8464746-CDS-L-elsbetiae_contig210:2024..22481622815861.8464746-CDS-L-elsbetiae_contig210:2024..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 2025..2248 +
1691683152.9414828-CDS-L-elsbetiae_contig210:2024..22481691683152.9414828-CDS-L-elsbetiae_contig210:2024..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 2025..2248 +
1622815861.8578188-CDS-L-elsbetiae_contig210:2632..28741622815861.8578188-CDS-L-elsbetiae_contig210:2632..2874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 2633..2874 +
1691683152.9514098-CDS-L-elsbetiae_contig210:2632..28741691683152.9514098-CDS-L-elsbetiae_contig210:2632..2874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 2633..2874 +
1622815861.8701959-CDS-L-elsbetiae_contig210:3184..37251622815861.8701959-CDS-L-elsbetiae_contig210:3184..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 3185..3725 +
1691683152.9603949-CDS-L-elsbetiae_contig210:3184..37251691683152.9603949-CDS-L-elsbetiae_contig210:3184..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig210 3185..3725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig210.6357.1

>prot_L-elsbetiae_contig210.6357.1 ID=prot_L-elsbetiae_contig210.6357.1|Name=mRNA_L-elsbetiae_contig210.6357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=529bp
MSHKVTIPGITTAVCREHCSDKGAPYYGTQYATECWCGTSDDEADYERHG
AGNCYMGCDGDESVACGGYDSYSLFKYGDGETPTMAPTTVMPASTDMPAS
TEMPASTGMPTSTDMPMSTDMPTSTDMPASMCSNGVPGIESPKSACCVAA
CGQCGGIGCATVALDLGLGSAECCEGTILLANEPCGEAPCVVGDGVLETE
SPASPTPTTTSPPATETPSPLVATPSGECEGDPVAAYEQCGGNTWKGSTC
CEDGLECVAMGKSACYSQCRRIDDTGSATPSPAGTTEPVMPVAPPTPEPE
MPVAPPTAEPTRAPVMPVAPPTPEPTRAPVMPVAPPTPEPTRAPVTPPTD
DDCMVKIIEGEDLAVTGDWKVVDDPDASGGRYIVWEGLSEGANNQDAEDG
DIISTTIDIATPGTYRFKWLMRQPSGVESDKGNDSWLNFPDADRFGPEGS
NASYGTFVKVYGWATGGIFEYSGTAEDAKHDHTQIAVEFAQAGQYVMEIA
GRSQGHEIDQIILFGDTLSVNDAAAGCQ*
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mRNA from alignment at L-elsbetiae_contig210:239..4622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig210.6357.1 ID=mRNA_L-elsbetiae_contig210.6357.1|Name=mRNA_L-elsbetiae_contig210.6357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4384bp|location=Sequence derived from alignment at L-elsbetiae_contig210:239..4622+ (Laminarionema elsbetiae ELsaHSoW15)
AGACCTGTTCAAGCTGTGGTGGCCCTCGGAGCCGGAGGATCCCGAGTACG
TTGGGTGCTACGCCGACGACGAGGAGGACCGCGTGATGTCCCACAAGGTC
ACGATCCCGGGAATAACCACGGCCGTCTGCCGCGAGCACTGCTCCGACAA
GGGCGCCCCGTACTACGGCACCCAGGCACGTTTGTGGGTTTGCGTGTGCT
GGAAGAGCGCGCCGTATTTGAACGGTTGTTGCTTTCATGCCCGGTAGTAC
ATATGTAGTAATCGCGGAAAAAGCACGGGTATATAGTAGAAAACGTCACG
GCAGAGCCCCGGCGTGTGGCATTCAAGACCCGTCTGCCGTACGCGGCTTT
CGTTTGCTGGAACGGCTGGCCGCCGGTGTACAAAAGTGGTAGGCAGTGCG
AAACCGTGCCGCCAAACGTGTTTTATTTTTCTTTGTTTTGGCAGCCGATT
TGCGTACAAAAGCACCCCTGCATCGGCTATTTTTGGGTTGGTTCGATTGG
GTATCTCAAGCGTTCTCGATCGCGTACCTCCGTGCTGAGCCGTCTTGTTT
TGTCCCTTTCGCTTCTCTACCCTCCCCCCCCCCCCCCCCCTTCCTCTTGA
TCTGCCGCGCGTCTTTTTCTACCCGAACTTGATATATGTGACATCTGTCA
GTACGCGACGGAATGCTGGTGCGGCACGAGCGACGACGAGGCCGACTACG
AGAGGCACGGCGCGGGCAACTGTTACATGGGCTGCGACGGCGACGAAAGC
GTCGCTTGCGGTGAGTGCAAGAACGGGAGCGTTGTTTCGTTGTCCCTGCC
GCCTAATTCCAGCCCTGCTGCCGCAAAAGTACGGTGTATATACCTCCGTG
CTGTGTAACTTTTCTCGACTCGCCCCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCNNNNNNNNNNCCCCCTCATTCCCCCCCCCCCGCCGCAA
AAAAAGGGGTTTATTTCCCCCCTCCGTTTTTTTTTTTCCTCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCAACATGTTGCAAGCCCGCGCCGTGCTGGT
CAACTTATTCGCTCCTGAAACCGGCCCCCACCACACACCCCCTTCATGCG
CTTTCCAGGCGGGTACGACTCCTACTCACTGTTCAAGTACGGCGACGGCG
AAACTCCGACTATGGCCCCCACGACGGTGATGCCAGCCTCGACCGACATG
CCAGCCTCCACCGAGATGCCAGCCTCCACCGGTATGCCTACTTCCACAGA
CATGCCTATGTCCACTGACATGCCGACCTCCACCGACATGCCAGCCTCAA
TGTGCAGCAACGGCGTCCCCGGCATCGAGTCTCCCAAGAGCGCCTGTTGC
GTGGCCGCCTGCGGCCAGTGCGGTGGCATCGGCTGCGCGACGGTGGCGTT
GGACCTCGGCCTCGGCTCCGCGGAGTGCTGCGAGGGAACCATCCTCCTCG
CAAACGAGCCCTGCGGAGAAGCCCCCTGCGTCGTCGGTGGTGCGTCGTGA
TGCAAAATATTTCGTGTTGTTTTTTCCTCGCCGCGTTTGGCTCTCCTCGC
TCGTTTGCTTTGTGCCTCGTGGTACTAACATAAGTAGCGTTGGACACCGT
GCCAGCTGCCTGCCTCCACTAAAACACGTCCGATTGTGGAGGTCGGAGCC
AAAGGCTCCCGCCAGACCAGATCAAGGCCCCCACCAGCTCTGCATCTGCA
GGACCCCCGCAACTACTGCCGACACGATTCTTACCGCATCCTGTCGCTTT
CGGTGCGCGCCATTTTTGTGTTTTCCTTCTTTGCAGATGGCGTGCTCGAG
ACGGAATCCCCGGCATCGCCCACCCCTACAACGACTTCTCCCCCCGCAAC
GGAGACCCCGTCGCCGCTGGTCGCCACCCCGAGCGGCGAGTGCGAAGGAG
ACCCGGTAGCGGCGTACGAGCAGTGCGGCGGCAACACGTGGAAGGGGTCG
ACCTGCTGCGAGGACGGCCTCGAGTGCGTCGCTATGGGCAAGAGCGCTTG
CTACTCGCAGGTGAGAACGCCAGGGGCGGTTGCTCTTTGAATGTATGCTA
TTACATATGTGTATAGCTGATGCGAAGCCCCACTTCTTAGTTATCCGCCC
ACTCTTACTCCCGAGGTACTGGAGAGCCGCTTCCGAAGTAAAAGTCGCGT
CCGCGTGTCTGTTGTGCGCGGTGCTGGCGCATGCTCATGCTCGTTACTTG
GACGGCCGTTCATTCCTGGCTAATCAAATACCGTCCTTGCCGAAGCCGTG
CGGACTGCCGAAAACGGCTATTATAGTGTACCCCGGCAGAAGAGAGTGCC
CCAACCCTTGTCCTTCTCGCTCTACTTCGCCCTGCCTTGCTTGACTCTCT
TGGTCACGATTCTTTCGCGCTCTTGTTCCACCTCAAATATTCAGTGCCGC
CGGATCGACGACACCGGCTCCGCCACGCCGTCCCCTGCCGGAACCACCGA
GCCCGTAATGCCGGTTGCTCCCCCCACCCCCGAGCCCGAGATGCCGGTCG
CGCCTCCTACGGCCGAGCCTACGCGTGCGCCGGTGATGCCGGTCGCGCCG
CCTACCCCCGAGCCTACGCGTGCGCCGGTGATGCCGGTTGCGCCGCCTAC
CCCCGAGCCTACGCGTGCGCCGGTGACCCCCCCCACGTGAGTTAAGCTGG
AGTCCCTCATCGCAGGGCTGTATCGCCTTCTCGCTTCCAGTGTAGCAGGG
CATGGTTTCAGCATTACAGGAGGCGTGCGAAAATCTGCCACGTACAGCGA
GAGACTGCGGTGCGTTCGTGCCAATAGGCGTGCGTGGTTGGCTCAGTAGG
TAATGACTGCTGTTGTCGTGCCGCAAACACCAAAGCAGGAGTAGATAAAG
TCTTCCCGCGCTTCCATTATTACTTCCACCCTCACAACCCCGTTCGATTT
TCGCTGCATCTCCTCTCGTTTTCTTGGGTGCGGGTCGCAACTGCAGTGAC
GACGATTGCATGGTCAAGATCATCGAGGGCGAAGACCTCGCGGTGACGGG
CGACTGGAAAGTCGTGGATGACCCGGACGCGAGCGGTGGGAGGTATATCG
TCTGGGAGGGCTTGTCCGAGGGAGCCAACAACCAAGACGCCGAGGACGGC
GACATCATCTCCACCACCATCGATATCGCCACCCCTGGAACCTACAGGTT
TAAATGGCTAATGCGCCAGCCTTCCGGCGTCGAGAGCGACAAGGGCAACG
ACAGCTGGCTCAACTTCCCTGACGCCGACAGGTTCGGGCCCGAAGGCAGC
AACGCCAGCTACGGCACCTTCGTCAAGGTCTACGGCTGGGCCACCGGCGG
CATCTTCGAGTACTCCGGCACGGCCGAAGACGCCAAACACGACCACACCC
AGATTGCCGTAGAGTTTGCGCAGGCCGGCCAGTACGTGATGGAGATCGCC
GGCCGCTCCCAGGGTCACGAGATTGACCAGATCATCTTGTTCGGAGACAC
CCTCAGCGTGAACGATGCCGCTGCCGGCTGTCAGTAAACGTTAAAGAGCG
CGACATGTTGTGATTATCGCAGAGCGACACTATTGTGTGTTACTCATTTC
GGTGGGCTTGGTAGAGTTTACGAAAAGTCAATGTTGAATTACCGGAGAGG
CGTATCAAGCCAGTCTCTTAGTGACCGCTGATGCCGCAGATGATTGTCGT
ACTGCTTTGTGTTGTGTTGTAGCTGACGACAAAGGAAGCTGTTGTACGGC
ACTGGAAGTGAGGGAGGACAAGTGAGGTCTCTCAAATTTCAGTTACTGCT
TGTTCTGTTGTGTTTTTTACCACGAACTCTTACAGTGTACCGGGGCGGCG
AGAGAGGTTGGGCTGTGGTTTTTGGAGGCAATGCCATGCGGGAAATGCTT
AGCAGTGGTGTTACCATCTGCGGTCGGTGTTTTGGAAGGCTGTAGACTGT
ACTTCAGTCGTTTGCTTTGGTTTGGAATGAAGGGACGATCAACTCATTTT
CAATGTTGGATTGCTCTGCTGCATTAATTAGCATCGCGCCCAATTTCGGA
ATGAAGAGACGATCAACTCGTTTTCAAAGTAAACCTCGGTCTTCCTGTAG
ATACTGCGGGGACGGGGCCTTGTCGTGTGTCTTTTTTTAGCTGGCGGGAG
AGAATCCTGACTCTGGGTTGTGCCACGCAGACAGTGTCTCTCTTTGGTTG
GTCTCTCCTCGTCACCTGAAGTGGAATTGGGCAACCAGGCGTTAACATGC
ACGCCGTCTCCTGGACGAAAGTAGGCAACAAGCGAAAGAGTGTAGATGAT
CCGAGGGTCTAAATGGCTTGTCGGGTACACTGAAAGGTGAACTCCATATT
ATTTTTTAGTGTCTTGTTTTGTTTGTTTTGAAACTGTTTGTTTGATGTAG
GCCGGGATCAGTAATAAAAATAAAATGTATTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig210:239..4622+

>mRNA_L-elsbetiae_contig210.6357.1 ID=mRNA_L-elsbetiae_contig210.6357.1|Name=mRNA_L-elsbetiae_contig210.6357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3174bp|location=Sequence derived from alignment at L-elsbetiae_contig210:239..4622+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCCACAAGGTCACGATCCCGGGAATAACCACGGCCGTCTGCCGCGA
GCACTGCTCCGACAAGGGCGCCCCGTACTACGGCACCCAGATGTCCCACA
AGGTCACGATCCCGGGAATAACCACGGCCGTCTGCCGCGAGCACTGCTCC
GACAAGGGCGCCCCGTACTACGGCACCCAGTACGCGACGGAATGCTGGTG
CGGCACGAGCGACGACGAGGCCGACTACGAGAGGCACGGCGCGGGCAACT
GTTACATGGGCTGCGACGGCGACGAAAGCGTCGCTTGCGTACGCGACGGA
ATGCTGGTGCGGCACGAGCGACGACGAGGCCGACTACGAGAGGCACGGCG
CGGGCAACTGTTACATGGGCTGCGACGGCGACGAAAGCGTCGCTTGCGGC
GGGTACGACTCCTACTCACTGTTCAAGTACGGCGACGGCGAAACTCCGAC
TATGGCCCCCACGACGGTGATGCCAGCCTCGACCGACATGCCAGCCTCCA
CCGAGATGCCAGCCTCCACCGGTATGCCTACTTCCACAGACATGCCTATG
TCCACTGACATGCCGACCTCCACCGACATGCCAGCCTCAATGTGCAGCAA
CGGCGTCCCCGGCATCGAGTCTCCCAAGAGCGCCTGTTGCGTGGCCGCCT
GCGGCCAGTGCGGTGGCATCGGCTGCGCGACGGTGGCGTTGGACCTCGGC
CTCGGCTCCGCGGAGTGCTGCGAGGGAACCATCCTCCTCGCAAACGAGCC
CTGCGGAGAAGCCCCCTGCGTCGTCGGTGGCGGGTACGACTCCTACTCAC
TGTTCAAGTACGGCGACGGCGAAACTCCGACTATGGCCCCCACGACGGTG
ATGCCAGCCTCGACCGACATGCCAGCCTCCACCGAGATGCCAGCCTCCAC
CGGTATGCCTACTTCCACAGACATGCCTATGTCCACTGACATGCCGACCT
CCACCGACATGCCAGCCTCAATGTGCAGCAACGGCGTCCCCGGCATCGAG
TCTCCCAAGAGCGCCTGTTGCGTGGCCGCCTGCGGCCAGTGCGGTGGCAT
CGGCTGCGCGACGGTGGCGTTGGACCTCGGCCTCGGCTCCGCGGAGTGCT
GCGAGGGAACCATCCTCCTCGCAAACGAGCCCTGCGGAGAAGCCCCCTGC
GTCGTCGGTGATGGCGTGCTCGAGACGGAATCCCCGGCATCGCCCACCCC
TACAACGACTTCTCCCCCCGCAACGGAGACCCCGTCGCCGCTGGTCGCCA
CCCCGAGCGGCGAGTGCGAAGGAGACCCGGTAGCGGCGTACGAGCAGTGC
GGCGGCAACACGTGGAAGGGGTCGACCTGCTGCGAGGACGGCCTCGAGTG
CGTCGCTATGGGCAAGAGCGCTTGCTACTCGCAGATGGCGTGCTCGAGAC
GGAATCCCCGGCATCGCCCACCCCTACAACGACTTCTCCCCCCGCAACGG
AGACCCCGTCGCCGCTGGTCGCCACCCCGAGCGGCGAGTGCGAAGGAGAC
CCGGTAGCGGCGTACGAGCAGTGCGGCGGCAACACGTGGAAGGGGTCGAC
CTGCTGCGAGGACGGCCTCGAGTGCGTCGCTATGGGCAAGAGCGCTTGCT
ACTCGCAGTGCCGCCGGATCGACGACACCGGCTCCGCCACGCCGTCCCCT
GCCGGAACCACCGAGCCCGTAATGCCGGTTGCTCCCCCCACCCCCGAGCC
CGAGATGCCGGTCGCGCCTCCTACGGCCGAGCCTACGCGTGCGCCGGTGA
TGCCGGTCGCGCCGCCTACCCCCGAGCCTACGCGTGCGCCGGTGATGCCG
GTTGCGCCGCCTACCCCCGAGCCTACGCGTGCGCCGGTGACCCCCCCCAC
TGCCGCCGGATCGACGACACCGGCTCCGCCACGCCGTCCCCTGCCGGAAC
CACCGAGCCCGTAATGCCGGTTGCTCCCCCCACCCCCGAGCCCGAGATGC
CGGTCGCGCCTCCTACGGCCGAGCCTACGCGTGCGCCGGTGATGCCGGTC
GCGCCGCCTACCCCCGAGCCTACGCGTGCGCCGGTGATGCCGGTTGCGCC
GCCTACCCCCGAGCCTACGCGTGCGCCGGTGACCCCCCCCACTGACGACG
ATTGCATGGTCAAGATCATCGAGGGCGAAGACCTCGCGGTGACGGGCGAC
TGGAAAGTCGTGGATGACCCGGACGCGAGCGGTGGGAGGTATATCGTCTG
GGAGGGCTTGTCCGAGGGAGCCAACAACCAAGACGCCGAGGACGGCGACA
TCATCTCCACCACCATCGATATCGCCACCCCTGGAACCTACAGGTTTAAA
TGGCTAATGCGCCAGCCTTCCGGCGTCGAGAGCGACAAGGGCAACGACAG
CTGGCTCAACTTCCCTGACGCCGACAGGTTCGGGCCCGAAGGCAGCAACG
CCAGCTACGGCACCTTCGTCAAGGTCTACGGCTGGGCCACCGGCGGCATC
TTCGAGTACTCCGGCACGGCCGAAGACGCCAAACACGACCACACCCAGAT
TGCCGTAGAGTTTGCGCAGGCCGGCCAGTACGTGATGGAGATCGCCGGCC
GCTCCCAGGGTCACGAGATTGACCAGATCATCTTGTTCGGAGACACCCTC
AGCGTGAACGATGCCGCTGCCGGCTGTCAGTAATGACGACGATTGCATGG
TCAAGATCATCGAGGGCGAAGACCTCGCGGTGACGGGCGACTGGAAAGTC
GTGGATGACCCGGACGCGAGCGGTGGGAGGTATATCGTCTGGGAGGGCTT
GTCCGAGGGAGCCAACAACCAAGACGCCGAGGACGGCGACATCATCTCCA
CCACCATCGATATCGCCACCCCTGGAACCTACAGGTTTAAATGGCTAATG
CGCCAGCCTTCCGGCGTCGAGAGCGACAAGGGCAACGACAGCTGGCTCAA
CTTCCCTGACGCCGACAGGTTCGGGCCCGAAGGCAGCAACGCCAGCTACG
GCACCTTCGTCAAGGTCTACGGCTGGGCCACCGGCGGCATCTTCGAGTAC
TCCGGCACGGCCGAAGACGCCAAACACGACCACACCCAGATTGCCGTAGA
GTTTGCGCAGGCCGGCCAGTACGTGATGGAGATCGCCGGCCGCTCCCAGG
GTCACGAGATTGACCAGATCATCTTGTTCGGAGACACCCTCAGCGTGAAC
GATGCCGCTGCCGGCTGTCAGTAA
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