mRNA_L-elsbetiae_contig20981.6347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20981.6347.1
Unique NamemRNA_L-elsbetiae_contig20981.6347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20981.6347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20981contigL-elsbetiae_contig20981:822..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog717773.Thicy_1445
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Large exoproteins involved in heme utilization or adhesion
EggNOG OGs1MXIP@1224,1RSAX@1236,461F5@72273,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelThiotrichales
Best eggNOG OGNA|NA|NA
Exons2
Model size843
Cds size843
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.2725966-CDS-L-elsbetiae_contig20981:821..12161622815860.2725966-CDS-L-elsbetiae_contig20981:821..1216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20981 822..1216 +
1691683151.7698033-CDS-L-elsbetiae_contig20981:821..12161691683151.7698033-CDS-L-elsbetiae_contig20981:821..1216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20981 822..1216 +
1622815860.2836761-CDS-L-elsbetiae_contig20981:1697..21451622815860.2836761-CDS-L-elsbetiae_contig20981:1697..2145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20981 1698..2145 +
1691683151.7893076-CDS-L-elsbetiae_contig20981:1697..21451691683151.7893076-CDS-L-elsbetiae_contig20981:1697..2145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20981 1698..2145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20981.6347.1prot_L-elsbetiae_contig20981.6347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20981 822..2145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20981.6347.1

>prot_L-elsbetiae_contig20981.6347.1 ID=prot_L-elsbetiae_contig20981.6347.1|Name=mRNA_L-elsbetiae_contig20981.6347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MLTLGKGDALFLGDVGSAVPLGDITIDGGRDVTFDGSVHASSLRQGAAPG
TADDGDGETEFREPALFTGTRGVVLETASVRVLDDVSITGGASRFTADVL
LAGDVLTASQPVVFDRTLVIVDERTIDTTLPLVLSGPGFGGDITFDGTLD
AIGEGASTLTLNAGVAERIFFEDLVGDSVPLDRITIEQAQDVTARAMFTV
GELFQTDTQDLTLFRGLEVLGDADLNGNRFRFMDTASFGGDVTITNFGLI
DILPIPVTLGGSFVQDGIGISNVATDLIATD
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mRNA from alignment at L-elsbetiae_contig20981:822..2145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20981.6347.1 ID=mRNA_L-elsbetiae_contig20981.6347.1|Name=mRNA_L-elsbetiae_contig20981.6347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1324bp|location=Sequence derived from alignment at L-elsbetiae_contig20981:822..2145+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCACGCTCGGTAAGGGCGACGCGCTGTTCCTCGGTGATGTCGGCTC
CGCAGTCCCGCTGGGCGACATCACGATCGACGGCGGCCGTGACGTAACGT
TCGATGGCTCCGTCCACGCCTCTTCGCTGCGTCAGGGCGCTGCCCCGGGC
ACCGCCGACGACGGAGACGGCGAGACCGAGTTCCGCGAGCCCGCCCTGTT
TACGGGCACACGCGGCGTGGTGCTCGAAACGGCGAGCGTCAGGGTTCTGG
ACGACGTGTCCATCACCGGCGGTGCCAGCCGATTCACCGCCGACGTGCTG
CTCGCGGGCGATGTTCTCACCGCTAGCCAGCCCGTGGTCTTTGACCGCAC
GCTGGTCATCGTTGACGAGCGCACGATCGATACAACCCTGCCGCTGTCCA
TGGGCGGCCCCGCCAGCGCGGGTGCCGCGATGGACTTCGCGTTCATCGAT
GGCGAGCCCGGCGGCGGCAAGGGCGGAAGCCTTGACGCAACGCTCCTGCT
CATCGCGGGCAACGGCGATATCACCATCGGCCTGCCCGGCTCGGGTGGNN
NNNNNNNNCGTCGGGCTCAACATGCCCAACTGGCTCACCGAACTCCGCAT
CGCCAGCGCCGGGTTCACATCGCTCGATGGGCCCGTCCGCGTGGGCGGCC
TGTTCCAGGAAGACGGTGGCGAAACCTCCATCAACGCGCCGGTCACGACC
TTCGCCGACGGCATGGTCGAGCTGGTTACGCGCAACAGCATCGATGTGCT
CGGCTCCATCGCGTCGGACGGCTCCGTGTTCCTCCAGGCGCCGGCCATCC
TGCTCGCGTCGGACGTCACCGCCATCACGGACTTCATCACCTTCGTCGGC
GCCACCCGTGTCGCGGGCGACGTCAGCGTGCTCAGCGGGCCGGGCTTCGG
CGGCGATATCACGTTCGACGGCACGCTCGACGCGATCGGCGAGGGCGCAA
GCACGCTCACGCTCAACGCGGGTGTCGCCGAACGCATCTTCTTCGAGGAC
CTCGTCGGCGACTCGGTTCCGCTCGATCGCATCACGATTGAGCAGGCGCA
GGACGTCACCGCCCGTGCGATGTTCACCGTCGGCGAGTTGTTCCAGACCG
ACACGCAGGACCTCACCCTGTTCCGGGGCCTTGAGGTGCTCGGCGATGCC
GACCTCAACGGCAACCGCTTCCGCTTCATGGATACCGCCAGCTTCGGCGG
CGACGTCACCATCACCAACTTCGGGCTCATCGACATCCTGCCGATCCCCG
TGACACTCGGCGGCTCGTTCGTTCAGGACGGCATCGGCATCTCGAATGTC
GCGACCGATCTCATCGCGACCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20981:822..2145+

>mRNA_L-elsbetiae_contig20981.6347.1 ID=mRNA_L-elsbetiae_contig20981.6347.1|Name=mRNA_L-elsbetiae_contig20981.6347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig20981:822..2145+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCACGCTCGGTAAGGGCGACGCGCTGTTCCTCGGTGATGTCGGCTC
CGCAGTCCCGCTGGGCGACATCACGATCGACGGCGGCCGTGACGTAACGT
TCGATGGCTCCGTCCACGCCTCTTCGCTGCGTCAGGGCGCTGCCCCGGGC
ACCGCCGACGACGGAGACGGCGAGACCGAGTTCCGCGAGCCCGCCCTGTT
TACGGGCACACGCGGCGTGGTGCTCGAAACGGCGAGCGTCAGGGTTCTGG
ACGACGTGTCCATCACCGGCGGTGCCAGCCGATTCACCGCCGACGTGCTG
CTCGCGGGCGATGTTCTCACCGCTAGCCAGCCCGTGGTCTTTGACCGCAC
GCTGGTCATCGTTGACGAGCGCACGATCGATACAACCCTGCCGCTATGCT
CACGCTCGGTAAGGGCGACGCGCTGTTCCTCGGTGATGTCGGCTCCGCAG
TCCCGCTGGGCGACATCACGATCGACGGCGGCCGTGACGTAACGTTCGAT
GGCTCCGTCCACGCCTCTTCGCTGCGTCAGGGCGCTGCCCCGGGCACCGC
CGACGACGGAGACGGCGAGACCGAGTTCCGCGAGCCCGCCCTGTTTACGG
GCACACGCGGCGTGGTGCTCGAAACGGCGAGCGTCAGGGTTCTGGACGAC
GTGTCCATCACCGGCGGTGCCAGCCGATTCACCGCCGACGTGCTGCTCGC
GGGCGATGTTCTCACCGCTAGCCAGCCCGTGGTCTTTGACCGCACGCTGG
TCATCGTTGACGAGCGCACGATCGATACAACCCTGCCGCTCGTGCTCAGC
GGGCCGGGCTTCGGCGGCGATATCACGTTCGACGGCACGCTCGACGCGAT
CGGCGAGGGCGCAAGCACGCTCACGCTCAACGCGGGTGTCGCCGAACGCA
TCTTCTTCGAGGACCTCGTCGGCGACTCGGTTCCGCTCGATCGCATCACG
ATTGAGCAGGCGCAGGACGTCACCGCCCGTGCGATGTTCACCGTCGGCGA
GTTGTTCCAGACCGACACGCAGGACCTCACCCTGTTCCGGGGCCTTGAGG
TGCTCGGCGATGCCGACCTCAACGGCAACCGCTTCCGCTTCATGGATACC
GCCAGCTTCGGCGGCGACGTCACCATCACCAACTTCGGGCTCATCGACAT
CCTGCCGATCCCCGTGACACTCGGCGGCTCGTTCGTTCAGGACGGCATCG
GCATCTCGAATGTCGCGACCGATCTCATCGCGACCGATCGTGCTCAGCGG
GCCGGGCTTCGGCGGCGATATCACGTTCGACGGCACGCTCGACGCGATCG
GCGAGGGCGCAAGCACGCTCACGCTCAACGCGGGTGTCGCCGAACGCATC
TTCTTCGAGGACCTCGTCGGCGACTCGGTTCCGCTCGATCGCATCACGAT
TGAGCAGGCGCAGGACGTCACCGCCCGTGCGATGTTCACCGTCGGCGAGT
TGTTCCAGACCGACACGCAGGACCTCACCCTGTTCCGGGGCCTTGAGGTG
CTCGGCGATGCCGACCTCAACGGCAACCGCTTCCGCTTCATGGATACCGC
CAGCTTCGGCGGCGACGTCACCATCACCAACTTCGGGCTCATCGACATCC
TGCCGATCCCCGTGACACTCGGCGGCTCGTTCGTTCAGGACGGCATCGGC
ATCTCGAATGTCGCGACCGATCTCATCGCGACCGAT
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