mRNA_L-elsbetiae_contig2097.6342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2097.6342.1
Unique NamemRNA_L-elsbetiae_contig2097.6342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2097.6342.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.820e-35
Identity = 124/162 (76.54%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:   25 SERDGLLQKLSGSASGSSRGGGTGXAXXXXXXXXXXXXXXXXALARMKARVVELEARIKENXXXXXXXXRAEXXRAAAAKEAERLRAXXXXAKQRRAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQWKVKKLQESQERTKAALKRKMEEHAIATRK 510
            SERDGLL KLS  AS  S     GX XXXXXXXXXXXX    ALA+MKARV ELEARI   XXXXXXXX   XX    AKEAERLR XXXX    RAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQW+VKKLQESQERT+AALKRKMEEH++A +K
Sbjct:  750 SERDGLLHKLSRGASSYSSASRPGXXXXXXXXXXXXXXA---ALAKMKARVAELEARIXXXXXXXXXXXXXXXXXXXXAKEAERLRXXXXXXXXXRAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQWQVKKLQESQERTQAALKRKMEEHSMAMKK 908
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BLAST of mRNA_L-elsbetiae_contig2097.6342.1 vs. uniprot
Match: A0A6H5K591_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K591_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.660e-16
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:  355 MKETRQLHLKDARMRRDGERMQWKVKKLQESQERTKAALKRKMEEHAIATRK 510
            MKETRQLHLKDARMRRDGERMQW+VKKLQESQERT+AALKRKMEEH++A +K
Sbjct:    1 MKETRQLHLKDARMRRDGERMQWQVKKLQESQERTQAALKRKMEEHSMAMKK 52
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BLAST of mRNA_L-elsbetiae_contig2097.6342.1 vs. uniprot
Match: A0A835YYL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.820e-10
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:  247 RAAAAKEAERLRAXXXXAKQRRAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQWKVKKLQESQERTKAALKRKMEEHAIATRK 510
            RA A +EAERLRA    AK+RRA LQ+   + +    +E  +  +  AR RR GER+QW+V+KLQE+  +T+A+L+RKMEEHA A RK
Sbjct:  731 RAEACREAERLRAEVEEAKRRRAGLQKQMADDAAAHRRERHEAAVAAARGRRQGERLQWEVRKLQEAHAKTQASLRRKMEEHAAAIRK 818
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2097.6342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMX1_ECTSI3.820e-3576.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K591_9PHAE1.660e-1688.46SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YYL2_9STRA1.820e-1051.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2097contigL-elsbetiae_contig2097:452..2932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D8LMX1
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons4
Model size512
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2097.6342.1prot_L-elsbetiae_contig2097.6342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2097 452..2930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.7347-CDS-L-elsbetiae_contig2097:451..6601622815859.7347-CDS-L-elsbetiae_contig2097:451..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 452..660 +
1691683151.4001248-CDS-L-elsbetiae_contig2097:451..6601691683151.4001248-CDS-L-elsbetiae_contig2097:451..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 452..660 +
1622815859.783278-CDS-L-elsbetiae_contig2097:1584..17051622815859.783278-CDS-L-elsbetiae_contig2097:1584..1705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 1585..1705 +
1691683151.4197164-CDS-L-elsbetiae_contig2097:1584..17051691683151.4197164-CDS-L-elsbetiae_contig2097:1584..1705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 1585..1705 +
1622815859.7969396-CDS-L-elsbetiae_contig2097:2153..22491622815859.7969396-CDS-L-elsbetiae_contig2097:2153..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 2154..2249 +
1691683151.4297044-CDS-L-elsbetiae_contig2097:2153..22491691683151.4297044-CDS-L-elsbetiae_contig2097:2153..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 2154..2249 +
1622815859.80917-CDS-L-elsbetiae_contig2097:2846..29301622815859.80917-CDS-L-elsbetiae_contig2097:2846..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 2847..2930 +
1691683151.4411664-CDS-L-elsbetiae_contig2097:2846..29301691683151.4411664-CDS-L-elsbetiae_contig2097:2846..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2097 2847..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2097.6342.1

>prot_L-elsbetiae_contig2097.6342.1 ID=prot_L-elsbetiae_contig2097.6342.1|Name=mRNA_L-elsbetiae_contig2097.6342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
QGEVTSLQSERDGLLQKLSGSASGSSRGGGTGGAGGGSGGAAAAAAGGGA
ALARMKARVVELEARIKENRKKVAEHQRAERERAAAAKEAERLRAEVAEA
KQRRAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQWKVKKLQESQ
ERTKAALKRKMEEHAIATRK
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mRNA from alignment at L-elsbetiae_contig2097:452..2932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2097.6342.1 ID=mRNA_L-elsbetiae_contig2097.6342.1|Name=mRNA_L-elsbetiae_contig2097.6342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2481bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:452..2932+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGAGAGGTGACGTCCCTCCAGTCTGAGCGGGATGGGCTCCTCCAAAA
GCTCTCGGGCTCGGCGTCGGGCTCCTCCCGCGGCGGCGGTACTGGCGGTG
CCGGCGGTGGGAGTGGGGGGGCGGCGGCGGCCGCAGCCGGCGGAGGGGCC
GCGTTGGCGCGAATGAAGGCCCGGGTCGTCGAGCTGGAAGCGCGCATCAA
GGAGAACAGGTGACCGCTCGATTTGATGGTGGCTGCTTGGGGTTTCCGTT
GGAAGAGGAGGTTGGTTGTGCGTGCATACGCGTTGTGTATATATGCGAGG
GGCTCTCGTTGGTTGGAAGGAGATTGTGTGTTTACGCGTGGTGCACCGTA
TACGACACGGGATAGCACACCCCCCTGGACCGATTTTCAAAGCTCAAGTA
CTCGACAGCGAGAAGAGTGTCAGTCCCGAAAAGGGCGGCGTTGGAAAGGT
CTCATCAAGAGCTAGCTAGCTGTCCGAAAACGTACCGTTTGGTACTGGAA
TCATACTCGTTGCGGAATAACCGAGCTTTGAAAATCGGGGTCCAGGGGGT
GTGCTATCTTGTTTCGTCTTCGGTACCGTATATGTGAGGGGCCTTCGATG
GAAGGAGATTGTGCGTGCGTACGCGTTGTGTATATGCGAGGAGGCGTTGC
TGAGAGCGGTTCAGACACAGCGAAAAGAGTGTGCTTGTGCATCGCGTTTC
GCAGGAGGGGCTTCAGCAGTGCGTGAAGACGTGCAGCAGTGACGCTGGTA
CTGTCCGTTTGGCGGTTGAATGTGCCTTCTTCTTGCTTGGACACTGACTG
CTACTGTGGTGTGGCGTTTGTCGGAGATGGTTCATCACGGGCCAAAAAAC
ACGGAAGTTTGTGCCACCTACAATATGGCTCTCGCACACGGCTCGCCTAT
GCACAGAAAATCGTCAAATTGAGGTTCATATGTGAAACAGAGTAAGGGGG
TTCCCTAACCCTAACCCTAACCCTAACCACGACCCCCCCCCCCCCCATTC
CTCCGATTCCATACTTTATCCCATATGTTTTTTTTTTTTTACTGAAAACC
TGCGTAGACTACCGTCGCACACCGGCTTCCCTAGACCGCCGTCGAGCTTA
CCATCACTGGCTGCTTCGACTGAAATATCGCAGGAAGAAGGTGGCGGAAC
ACCAGCGAGCCGAGAGGGAGCGCGCGGCGGCAGCGAAGGAGGCCGAGAGG
CTCAGAGCTGAGGTGGCCGAGGCCAAGCAGCGGCGGGCCGAGTTGCAGCG
CACGGTGAGTTCGGTTAGGCCTAAGGCCTCGCTCAGCAGCATCATGCATA
TGTAGAGCGTTTTCCCTTTCTCACTTCTTCCTGGTGCTCTTTCTGTTTCC
TGCCGCCTTGCTGCCACGACGTGAAACGGCAAGCGGAGAGGGGGGGGGGG
GTTATGGGAGTCGCGGGGGAGATACGGCAGTGCTGCCAACTTCCTGTGAA
GAAACGGTTCGCTTGCCAGCTCTGCCATGCCGGGATGTGCGTGCGTGCAC
ATGCAAGACGACGCAGCCGCGCGTCGGATCACATGAATGAAGTTACCCCC
CCCCGCCTCGCCCCCGCGCGCGCGCTCTGTCGCCCCCCCCACGCTTTTGT
GTTTGTCTCTTGGTCGTTTTCTCCACGTGTCGGGACAACAATGGTAACGC
TTTTGACACTACACTACACCACACCAAACCACACCACACTGAAATAAAAT
AGCACCGAGAGGCATCGACTCGCTTCATGAAGGAAACGCGACAGCTCCAC
CTCAAGGACGCGCGCATGCGGCGGGATGGGGAGCGCATGCAGTGGAAGGT
GTGTTTTGCTGCATGGGTACTGCTGGTTGATCCGTCGAAGGGCACGGGGG
TTTCGGTCATTTTGAAAAGGTTTCAGCAGCTCCCCTACAATACGTACTTG
TCGTATCCGCTGTTCTTTCGCCTCCTTATTGGGTGTTTTCTAACTACCGC
TGTAGGCTGTTTTGTTAAGAGTTTGTCGGACTACGCAAAGCGGCTTGTCT
CGGCCTACATCTTTGAAGTCTTCTGTAGTTTCAGCTCTGAGCCGTGTGTA
TGGTAGATAGCGTCCTGACGGCACTGCATCAAAACCGCCATGTAATATAC
ATACATATGTGTGTACCTGCTAACTTTATCTCTTCGACCGAGATTACACG
GCGAAATCCGTGAGAACTGCGACGGTTTTTTTATGCCGATCGACATACAC
ACTACGCGTGACGGATTATTGGCGAGCCTTCGATGGTCTCTGCCCTCACC
TACCCCCCCGTGGTACATACTACTACGCGTGACTGATTCTTGGCGAGTCC
TCGATGGTCTTTGCCCTTACCTACAACCACCCCCACGGCAAGCAACGATC
GACTCAGCTGCATCATCACCCCCACACACGAAACGCACCAATCAGGTGAA
GAAGCTCCAAGAATCGCAGGAGAGGACCAAAGCCGCGCTCAAGCGAAAGA
TGGAGGAGCACGCCATTGCTACGAGAAAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2097:452..2932+

>mRNA_L-elsbetiae_contig2097.6342.1 ID=mRNA_L-elsbetiae_contig2097.6342.1|Name=mRNA_L-elsbetiae_contig2097.6342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:452..2932+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGAGAGGTGACGTCCCTCCAGTCTGAGCGGGATGGGCTCCTCCAAAA
GCTCTCGGGCTCGGCGTCGGGCTCCTCCCGCGGCGGCGGTACTGGCGGTG
CCGGCGGTGGGAGTGGGGGGGCGGCGGCGGCCGCAGCCGGCGGAGGGGCC
GCGTTGGCGCGAATGAAGGCCCGGGTCGTCGAGCTGGAAGCGCGCATCAA
GGAGAACAGCAGGGAGAGGTGACGTCCCTCCAGTCTGAGCGGGATGGGCT
CCTCCAAAAGCTCTCGGGCTCGGCGTCGGGCTCCTCCCGCGGCGGCGGTA
CTGGCGGTGCCGGCGGTGGGAGTGGGGGGGCGGCGGCGGCCGCAGCCGGC
GGAGGGGCCGCGTTGGCGCGAATGAAGGCCCGGGTCGTCGAGCTGGAAGC
GCGCATCAAGGAGAACAGGAAGAAGGTGGCGGAACACCAGCGAGCCGAGA
GGGAGCGCGCGGCGGCAGCGAAGGAGGCCGAGAGGCTCAGAGCTGAGGTG
GCCGAGGCCAAGCAGCGGCGGGCCGAGTTGCAGCGCACGGAAGAAGGTGG
CGGAACACCAGCGAGCCGAGAGGGAGCGCGCGGCGGCAGCGAAGGAGGCC
GAGAGGCTCAGAGCTGAGGTGGCCGAGGCCAAGCAGCGGCGGGCCGAGTT
GCAGCGCACGCACCGAGAGGCATCGACTCGCTTCATGAAGGAAACGCGAC
AGCTCCACCTCAAGGACGCGCGCATGCGGCGGGATGGGGAGCGCATGCAG
TGGAAGCACCGAGAGGCATCGACTCGCTTCATGAAGGAAACGCGACAGCT
CCACCTCAAGGACGCGCGCATGCGGCGGGATGGGGAGCGCATGCAGTGGA
AGGTGAAGAAGCTCCAAGAATCGCAGGAGAGGACCAAAGCCGCGCTCAAG
CGAAAGATGGAGGAGCACGCCATTGCTACGAGAAAGGTGAAGAAGCTCCA
AGAATCGCAGGAGAGGACCAAAGCCGCGCTCAAGCGAAAGATGGAGGAGC
ACGCCATTGCTACGAGAAAG
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