mRNA_L-elsbetiae_contig20967.6341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20967.6341.1
Unique NamemRNA_L-elsbetiae_contig20967.6341.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.260e-19
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            HNFADG  IG AFL C  TIGWTVTAS +LHE+PHEIADFMALLNGGMS+
Sbjct:  197 HNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSL 246
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.720e-19
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            HNFADG  IG AFL C  T+GWTVTAS +LHE+PHEIADFMALLNGGMS+
Sbjct:  395 HNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSL 444
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 9.220e-19
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            HNFADG  IG AFL C  T+GWTV AS +LHE+PHE+ADFMALLNGGMS+
Sbjct:  357 HNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSL 406
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.420e-17
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            HNFADG  IG AFL CG+++GWT+TAST+LHEIP E+ADF+ALL GGMS+
Sbjct:  219 HNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSL 268
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.890e-17
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            H+F  GF IG AFL CG+T+GWT+TAST++HE+P E+ADF+ALLNGGMS+
Sbjct:  359 HSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSI 408
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.900e-17
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV 150
            H+F  GF IG AFL CG+T+GWT+TAST++HE+P E+ADF+ALLNGGMS+
Sbjct:  355 HSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSI 404
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: A0A6T8DJE8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8DJE8_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGG 141
            HNF DG IIG AF GCG ++GW++TASTI HE+  E++D++ L   G
Sbjct:  183 HNFVDGIIIGIAFSGCGQSMGWSITASTIYHELAQEVSDYVVLTELG 229
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: A0A521ZDS8_9BURK (ZIP family metal transporter n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZDS8_9BURK)

HSP 1 Score: 62.0 bits (149), Expect = 3.920e-10
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMS 147
            HNF DG +I GAFL   + +GW VT S ++HE+PH+++DFM LLN G +
Sbjct:  124 HNFVDGLLIAGAFLADVH-LGWVVTLSIVVHEVPHKVSDFMVLLNAGFT 171
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: Q017A3_OSTTA (Zinc/iron permease n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=Q017A3_OSTTA)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLN 135
            HN  DG  IG  FL CG T+GW++TA+T+ HEI  E+AD++ L++
Sbjct:  318 HNLVDGIFIGFGFLNCGTTMGWSITAATVYHEIAQELADYLVLVD 362
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BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Match: M4BCL4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCL4_HYAAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMS 147
            HNF DG +I  AFL C +T+G +VT S+ILHE+P E ADF+ L+  G +
Sbjct:  354 HNFVDGVLIATAFLACDDTLGVSVTVSSILHELPQEFADFIILVESGFT 402
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20967.6341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLV2_ECTSI1.260e-1980.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L662_9PHAE2.720e-1978.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW4_ECTSI9.220e-1974.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNP7_ECTSI1.420e-1772.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRW4_ECTSI2.890e-1768.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN39_9PHAE2.900e-1768.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T8DJE8_9EUKA1.560e-1055.32Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A521ZDS8_9BURK3.920e-1053.06ZIP family metal transporter n=1 Tax=Burkholderiac... [more]
Q017A3_OSTTA1.590e-951.11Zinc/iron permease n=1 Tax=Ostreococcus tauri TaxI... [more]
M4BCL4_HYAAE1.590e-953.06Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20967contigL-elsbetiae_contig20967:100..249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog2880.D7FLV2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.705106-CDS-L-elsbetiae_contig20967:99..2491622815859.705106-CDS-L-elsbetiae_contig20967:99..249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20967 100..249 -
1691683151.3897426-CDS-L-elsbetiae_contig20967:99..2491691683151.3897426-CDS-L-elsbetiae_contig20967:99..249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20967 100..249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20967.6341.1prot_L-elsbetiae_contig20967.6341.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20967 100..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20967.6341.1

>prot_L-elsbetiae_contig20967.6341.1 ID=prot_L-elsbetiae_contig20967.6341.1|Name=mRNA_L-elsbetiae_contig20967.6341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
HNFADGFIIGGAFLGCGNTIGWTVTASTILHEIPHEIADFMALLNGGMSV
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mRNA from alignment at L-elsbetiae_contig20967:100..249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20967.6341.1 ID=mRNA_L-elsbetiae_contig20967.6341.1|Name=mRNA_L-elsbetiae_contig20967.6341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig20967:100..249- (Laminarionema elsbetiae ELsaHSoW15)
CACAACTTTGCCGACGGTTTCATCATCGGAGGCGCCTTCCTCGGCTGCGG
CAACACCATCGGCTGGACCGTGACCGCTTCCACGATCCTGCACGAGATCC
CCCACGAGATCGCTGACTTCATGGCTCTGCTTAACGGGGGAATGAGCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20967:100..249-

>mRNA_L-elsbetiae_contig20967.6341.1 ID=mRNA_L-elsbetiae_contig20967.6341.1|Name=mRNA_L-elsbetiae_contig20967.6341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig20967:100..249- (Laminarionema elsbetiae ELsaHSoW15)
CACAACTTTGCCGACGGTTTCATCATCGGAGGCGCCTTCCTCGGCTGCGG
CAACACCATCGGCTGGACCGTGACCGCTTCCACGATCCTGCACGAGATCC
CCCACGAGATCGCTGACTTCATGGCTCTGCTTAACGGGGGAATGAGCGTC
CACAACTTTGCCGACGGTTTCATCATCGGAGGCGCCTTCCTCGGCTGCGG
CAACACCATCGGCTGGACCGTGACCGCTTCCACGATCCTGCACGAGATCC
CCCACGAGATCGCTGACTTCATGGCTCTGCTTAACGGGGGAATGAGCGTC
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