mRNA_L-elsbetiae_contig20961.6339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20961.6339.1
Unique NamemRNA_L-elsbetiae_contig20961.6339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: A0A6H5JZ81_9PHAE (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.530e-34
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 FELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            FELKEDEHY KFL LV+ RP GVPLLTV NHCSP+DDPGVLVGMLPA VTVRPELMRWTICAQEICF
Sbjct:   77 FELKEDEHYRKFLSLVEERPSGVPLLTVCNHCSPVDDPGVLVGMLPARVTVRPELMRWTICAQEICF 143          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: D7G278_ECTSI (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.460e-18
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    7 LKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            L +DE + + + LV+ RP G PLLTV+NH S LDDP V+  +LP  + VRP LMRW++C+QEICF
Sbjct:   20 LVKDERHARLVDLVRDRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICF 84          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: A0A835ZCU4_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.510e-16
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    7 LKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVT-VRPELMRWTICAQEICF 201
            + +DEHY  FL  V+ R  G PL+TVSNH  PLDDP +L  ++P  +  ++PELMR+TIC+Q+ICF
Sbjct:  137 ITKDEHYAAFLRAVEARGNGTPLITVSNHACPLDDPCMLAALMPFRLAALKPELMRFTICSQDICF 202          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: A0A482USC8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USC8_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 5.540e-15
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 FELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            F + ED +Y  FL LVK R    PLLT+SNH S +DDPGVL  +LP  + ++P  +R+++CAQE CF
Sbjct:  117 FRIIEDGNYYNFLELVKKREGSRPLLTISNHRSLIDDPGVLSNILPFHMNIQPRYVRYSLCAQEYCF 183          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: L1K3X0_GUITC (Tafazzin family protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3X0_GUITC)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-13
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    4 ELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            ++ ED  ++ +L  ++ RP G+PL+TV+NH S  DDPG++  + P  V + P  MRW +C QEICF
Sbjct:   19 QVVEDSRHEAWLARIRSRPAGIPLITVANHESCCDDPGLMGALTPWDVAIDPIRMRWGLCTQEICF 84          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: A0A7S0YW25_9CRYP (Tafazzin family protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW25_9CRYP)

HSP 1 Score: 67.4 bits (163), Expect = 8.840e-13
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 ELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            E  +DE Y      ++ RP GVPLLTV NH S LDDPG++  ++P  V + P  +RW I  Q+I F
Sbjct:   40 EYVDDERYRFLQSSIRHRPSGVPLLTVCNHQSSLDDPGLMSSLIPWDVVLTPSRVRWAIATQDIVF 105          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: K0TQ94_THAOC (Tafazzin family protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQ94_THAOC)

HSP 1 Score: 70.9 bits (172), Expect = 9.140e-13
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 FELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            + + +D+HY  FL +V G  R   L+TVSNH S  DDPGV+  +LP  V V P+  RW IC+QE CF
Sbjct:  111 YSIHDDKHYRHFLEVVLGDRRSQGLVTVSNHRSLFDDPGVVSCLLPLHVAVVPKYNRWGICSQEYCF 177          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: UPI0006A6F57F (N-acylphosphatidylethanolamine synthase-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6F57F)

HSP 1 Score: 65.9 bits (159), Expect = 3.540e-12
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   28 DKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            D  L LV+ RP GVPL+TVSNH S LDDP +  G     +++ PEL RW + A++ICF
Sbjct:   46 DTLLTLVRSRPPGVPLITVSNHMSTLDDPVMWGGFKGLLLSLDPELARWVLAAEDICF 103          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: A0A0D2ZXQ1_BRAOL (Tafazzin family protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZXQ1_BRAOL)

HSP 1 Score: 65.9 bits (159), Expect = 3.880e-12
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   28 DKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            D  L LV+ RP GVPL+TVSNH S LDDP +  G     +++ PEL RW + A++ICF
Sbjct:   62 DTLLTLVRSRPPGVPLITVSNHMSTLDDPVMWGGFKGLLLSLDPELARWVLAAEDICF 119          
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Match: I1HUV7_BRADI (PlsC domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HUV7_BRADI)

HSP 1 Score: 67.8 bits (164), Expect = 1.180e-11
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   28 DKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVTVRPELMRWTICAQEICF 201
            +K    + GRP+G PLLTVSNH + +DDP V+  +LP SV +  + +RWT+CA + CF
Sbjct:  131 EKLEQALHGRPKGKPLLTVSNHVAAMDDPFVIASLLPPSVMMEAQKLRWTLCATDRCF 188          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20961.6339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ81_9PHAE2.530e-3488.06Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G278_ECTSI1.460e-1855.38Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCU4_9STRA8.510e-1653.03Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A482USC8_9ARCH5.540e-1550.75Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
L1K3X0_GUITC1.040e-1343.94Tafazzin family protein n=1 Tax=Guillardia theta (... [more]
A0A7S0YW25_9CRYP8.840e-1345.45Tafazzin family protein (Fragment) n=1 Tax=Hemisel... [more]
K0TQ94_THAOC9.140e-1349.25Tafazzin family protein n=1 Tax=Thalassiosira ocea... [more]
UPI0006A6F57F3.540e-1251.72N-acylphosphatidylethanolamine synthase-like n=1 T... [more]
A0A0D2ZXQ1_BRAOL3.880e-1251.72Tafazzin family protein n=1 Tax=Brassica oleracea ... [more]
I1HUV7_BRADI1.180e-1148.28PlsC domain-containing protein n=1 Tax=Brachypodiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20961contigL-elsbetiae_contig20961:2023..2223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue6.2e-28
Seed eggNOG ortholog2880.D7FH08
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Ec32 ortholog descriptionAcyltransferase, putative
Ec32 orthologEc-26_003030.1
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.6075697-CDS-L-elsbetiae_contig20961:2022..22231622815859.6075697-CDS-L-elsbetiae_contig20961:2022..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20961 2023..2223 -
1691683151.3360639-CDS-L-elsbetiae_contig20961:2022..22231691683151.3360639-CDS-L-elsbetiae_contig20961:2022..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20961 2023..2223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20961.6339.1prot_L-elsbetiae_contig20961.6339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20961 2023..2223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20961.6339.1

>prot_L-elsbetiae_contig20961.6339.1 ID=prot_L-elsbetiae_contig20961.6339.1|Name=mRNA_L-elsbetiae_contig20961.6339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
FELKEDEHYDKFLGLVKGRPRGVPLLTVSNHCSPLDDPGVLVGMLPASVT
VRPELMRWTICAQEICF
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mRNA from alignment at L-elsbetiae_contig20961:2023..2223-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20961.6339.1 ID=mRNA_L-elsbetiae_contig20961.6339.1|Name=mRNA_L-elsbetiae_contig20961.6339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig20961:2023..2223- (Laminarionema elsbetiae ELsaHSoW15)
TTTGAGTTGAAAGAGGACGAGCACTACGACAAGTTCCTCGGCCTGGTCAA GGGCCGGCCGCGGGGGGTGCCCCTCCTGACGGTCTCGAACCACTGCTCCC CGCTGGACGACCCGGGCGTGCTGGTGGGCATGCTGCCCGCGAGCGTGACG GTGAGGCCGGAGCTCATGCGCTGGACCATCTGCGCGCAGGAGATCTGCTT C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20961:2023..2223-

>mRNA_L-elsbetiae_contig20961.6339.1 ID=mRNA_L-elsbetiae_contig20961.6339.1|Name=mRNA_L-elsbetiae_contig20961.6339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig20961:2023..2223- (Laminarionema elsbetiae ELsaHSoW15)
TTTGAGTTGAAAGAGGACGAGCACTACGACAAGTTCCTCGGCCTGGTCAA
GGGCCGGCCGCGGGGGGTGCCCCTCCTGACGGTCTCGAACCACTGCTCCC
CGCTGGACGACCCGGGCGTGCTGGTGGGCATGCTGCCCGCGAGCGTGACG
GTGAGGCCGGAGCTCATGCGCTGGACCATCTGCGCGCAGGAGATCTGCTT
CTTTGAGTTGAAAGAGGACGAGCACTACGACAAGTTCCTCGGCCTGGTCA
AGGGCCGGCCGCGGGGGGTGCCCCTCCTGACGGTCTCGAACCACTGCTCC
CCGCTGGACGACCCGGGCGTGCTGGTGGGCATGCTGCCCGCGAGCGTGAC
GGTGAGGCCGGAGCTCATGCGCTGGACCATCTGCGCGCAGGAGATCTGCT
TC
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