mRNA_L-elsbetiae_contig20898.6320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20898.6320.1
Unique NamemRNA_L-elsbetiae_contig20898.6320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20898.6320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20898contigL-elsbetiae_contig20898:310..1208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size899
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20898.6320.1prot_L-elsbetiae_contig20898.6320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20898 577..1065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.9584754-UTR-L-elsbetiae_contig20898:309..5761622815857.9584754-UTR-L-elsbetiae_contig20898:309..576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20898 310..576 +
1691683150.2222075-UTR-L-elsbetiae_contig20898:309..5761691683150.2222075-UTR-L-elsbetiae_contig20898:309..576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20898 310..576 +
1622815857.9881985-UTR-L-elsbetiae_contig20898:1065..12081622815857.9881985-UTR-L-elsbetiae_contig20898:1065..1208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20898 1066..1208 +
1691683150.2488978-UTR-L-elsbetiae_contig20898:1065..12081691683150.2488978-UTR-L-elsbetiae_contig20898:1065..1208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20898 1066..1208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.9719188-CDS-L-elsbetiae_contig20898:576..10651622815857.9719188-CDS-L-elsbetiae_contig20898:576..1065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20898 577..1065 +
1691683150.2352095-CDS-L-elsbetiae_contig20898:576..10651691683150.2352095-CDS-L-elsbetiae_contig20898:576..1065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20898 577..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20898.6320.1

>prot_L-elsbetiae_contig20898.6320.1 ID=prot_L-elsbetiae_contig20898.6320.1|Name=mRNA_L-elsbetiae_contig20898.6320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MHRGGRGGGRSGGGSGRWQAHAGHPAQQNHYRPQDARANVAQAASSSLVT
YGDGNFSYSDSERSYVNPYGRYVNPHTSSGDPYELSEYAAYAERATAPAP
GTAPAGYDAADQGYYAEPQPTQQQPEQQQKLVRYSPPAPLSSASPSPGSV
LVDLPCTSSSHG*
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mRNA from alignment at L-elsbetiae_contig20898:310..1208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20898.6320.1 ID=mRNA_L-elsbetiae_contig20898.6320.1|Name=mRNA_L-elsbetiae_contig20898.6320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=899bp|location=Sequence derived from alignment at L-elsbetiae_contig20898:310..1208+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCCAGTACCGCGAGTTCATCCTTCGCCGCCGAGACGAGCAGCACCA
CCGCGCGCACAAAGAGCACCTCGAACGCCTGTACCCTCGCCCTGATCGCG
GCCGCGGGAATCATCACCCGCCGCCGTCGGATCATGGCCAGGGGCACGCG
CCCGACACGAGACAGACATGGAGCGGCGGAGAGCACCAGCAGGGCCGAGG
TCGCGGCCAGTGTGGCCGGGGCCGAGGCGATGCTGGCCCCGGGGGCCGAG
GCGGCCCTAGGGGACGCATGCACCGCGGCGGCCGAGGAGGCGGCCGTAGC
GGCGGCGGTAGTGGTCGGTGGCAGGCACACGCCGGTCACCCGGCACAGCA
AAACCACTATCGGCCGCAGGACGCCCGCGCCAACGTGGCGCAGGCCGCAT
CGTCTTCACTCGTCACGTACGGCGACGGCAACTTCAGCTACAGCGACTCG
GAGCGCAGCTACGTAAACCCTTACGGGCGGTACGTGAATCCGCACACCTC
CTCCGGCGACCCGTACGAGCTTTCGGAGTATGCCGCGTACGCGGAGCGCG
CCACCGCCCCCGCCCCCGGCACCGCCCCCGCCGGATATGATGCAGCTGAC
CAAGGGTACTACGCCGAGCCACAGCCCACCCAGCAGCAGCCCGAACAGCA
GCAGAAGCTCGTCCGCTACAGTCCCCCAGCGCCGCTGTCTTCCGCTTCTC
CCTCTCCTGGATCCGTCCTGGTGGATCTTCCCTGCACCTCCTCGTCGCAC
GGTTAGTGCCCAGAGGCGAGTCTGATTTTCCCCCCTCCGGTGTACCTGAC
TTGTCTGATGGTGGGGTTGGTTCTGCTTTTTCGGTCTTTCCAGTTGGTAA
TGCGGATTTGTGCCAGCCTGAGGGTAGTGAGATAGTGTATTCTGATTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20898:310..1208+

>mRNA_L-elsbetiae_contig20898.6320.1 ID=mRNA_L-elsbetiae_contig20898.6320.1|Name=mRNA_L-elsbetiae_contig20898.6320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig20898:310..1208+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCGCGGCGGCCGAGGAGGCGGCCGTAGCGGCGGCGGTAGTGGTCG
GTGGCAGGCACACGCCGGTCACCCGGCACAGCAAAACCACTATCGGCCGC
AGGACGCCCGCGCCAACGTGGCGCAGGCCGCATCGTCTTCACTCGTCACG
TACGGCGACGGCAACTTCAGCTACAGCGACTCGGAGCGCAGCTACGTAAA
CCCTTACGGGCGGTACGTGAATCCGCACACCTCCTCCGGCGACCCGTACG
AGCTTTCGGAGTATGCCGCGTACGCGGAGCGCGCCACCGCCCCCGCCCCC
GGCACCGCCCCCGCCGGATATGATGCAGCTGACCAAGGGTACTACGCCGA
GCCACAGCCCACCCAGCAGCAGCCCGAACAGCAGCAGAAGCTCGTCCGCT
ACAGTCCCCCAGCGCCGCTGTCTTCCGCTTCTCCCTCTCCTGGATCCGTC
CTGGTGGATCTTCCCTGCACCTCCTCGTCGCACGGTTAGATGCACCGCGG
CGGCCGAGGAGGCGGCCGTAGCGGCGGCGGTAGTGGTCGGTGGCAGGCAC
ACGCCGGTCACCCGGCACAGCAAAACCACTATCGGCCGCAGGACGCCCGC
GCCAACGTGGCGCAGGCCGCATCGTCTTCACTCGTCACGTACGGCGACGG
CAACTTCAGCTACAGCGACTCGGAGCGCAGCTACGTAAACCCTTACGGGC
GGTACGTGAATCCGCACACCTCCTCCGGCGACCCGTACGAGCTTTCGGAG
TATGCCGCGTACGCGGAGCGCGCCACCGCCCCCGCCCCCGGCACCGCCCC
CGCCGGATATGATGCAGCTGACCAAGGGTACTACGCCGAGCCACAGCCCA
CCCAGCAGCAGCCCGAACAGCAGCAGAAGCTCGTCCGCTACAGTCCCCCA
GCGCCGCTGTCTTCCGCTTCTCCCTCTCCTGGATCCGTCCTGGTGGATCT
TCCCTGCACCTCCTCGTCGCACGGTTAG
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