mRNA_L-elsbetiae_contig2089.6318.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2089.6318.1
Unique NamemRNA_L-elsbetiae_contig2089.6318.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: D7FYF3_ECTSI (Predicted unusual protein kinase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 7.000e-45
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 DVLTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            DVLTDADGLPLVYDSDSIGRYWDKRPGELN RW++FLSVTVPFVTRVV+DYTSG+IMKNEA LARDLRIVIEKLGPTFIK+G
Sbjct:  241 DVLTDADGLPLVYDSDSIGRYWDKRPGELNSRWSKFLSVTVPFVTRVVRDYTSGNIMKNEAVLARDLRIVIEKLGPTFIKLG 322          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A0A6H5KBP7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 7.760e-44
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 DVLTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            DVLTDADGLPLVYDSDSIGRYWDKRPGELN RW++FLSVTVPFVTRVV+DYTSG+IMKNEA LARDLRIVIEKLGPTFIK+G
Sbjct:  217 DVLTDADGLPLVYDSDSIGRYWDKRPGELNSRWSKFLSVTVPFVTRVVRDYTSGNIMKNEAVLARDLRIVIEKLGPTFIKLG 298          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: W7TP01_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP01_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.120e-29
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 DVLTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            D LT  DGLPLVY+  +I +YWD RP E+  RW  FLSVT PF+T++VK +T G++   EA LARDLRIV+EKLGPTF+K+G
Sbjct:  144 DALTSRDGLPLVYEPKTIKKYWDARPAEMQRRWALFLSVTAPFLTKLVKGFTQGTLFDKEAELARDLRIVLEKLGPTFVKLG 225          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.600e-26
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   10 TDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            TD +GLPLVYD  +I +YWD RPGE+  RWT FL  TVPF+TR+V+ ++SG ++  E+ +ARDLRIVIE LGPTFIK+G
Sbjct:   47 TDENGLPLVYDPLTIKKYWDSRPGEMTQRWTFFLGQTVPFITRLVRYFSSGQLLSRESEIARDLRIVIENLGPTFIKLG 125          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A0A7S0G3E2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3E2_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 2.330e-25
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 DVLTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            +V+ D  GLPL YD  +I RYWDKRP EL  RWT FL V VPF T+++++ T+G+I KN+  L RD RI++EKLGPTF+K+G
Sbjct:   56 EVVDDKTGLPLRYDGATIRRYWDKRPVELQSRWTFFLGVVVPFGTKLLRNLTAGTIEKNQRELCRDFRILLEKLGPTFVKLG 137          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A0A1Y5ILL7_OSTTA (ABC1 family-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5ILL7_OSTTA)

HSP 1 Score: 97.8 bits (242), Expect = 6.160e-22
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   13 DADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVK-DYTSGS--IMKNEAALARDLRIVIEKLGPTFIKVG 246
            DADGLPLVYD ++I +YWDK+ G L  RW  FLS++VPF+T++     T GS  + KN+  LARD RI+IEKLGPT+IK G
Sbjct:  120 DADGLPLVYDKEAIQKYWDKQGGALQRRWGEFLSLSVPFLTKIATLAITGGSAELSKNDRVLARDARIIIEKLGPTYIKAG 200          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A4RWD4_OSTLU (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RWD4_OSTLU)

HSP 1 Score: 94.7 bits (234), Expect = 5.620e-21
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   13 DADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVK-DYTSGS--IMKNEAALARDLRIVIEKLGPTFIKVG 246
            D DGLPLVYD   I +YWDK+ G L  RW  FLS++VPF+T+V     T GS  + KN+ ALA+D RI+IEKLGPT+IK G
Sbjct:    2 DEDGLPLVYDKAQIQKYWDKQGGALQRRWGEFLSLSVPFLTKVATLAITGGSAELSKNDRALAKDARIIIEKLGPTYIKAG 82          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: A0A7S0I2J2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I2J2_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-20
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    7 LTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSG---SIMKNEAALARDLRIVIEKLGPTFIKVG 246
            L D +GLPL+YD D+I  YW  + G L  RW  FL VTVPF+TRV     SG   ++  N A LARD RI +EKLGPT+IK+G
Sbjct:   80 LVDDEGLPLIYDKDAIQAYWAGQSGALQQRWLEFLGVTVPFITRVAGLLISGGTEALEANSAELARDARINLEKLGPTYIKMG 162          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: D8U214_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U214_VOLCA)

HSP 1 Score: 93.6 bits (231), Expect = 1.870e-20
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 DADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKDYTSGSIMKNEAALARDLRIVIEKLGPTFIKVG 246
            DADGLPLVY+ + I  YW  RPGEL GRWT+F +V+ P++T++     SG + ++ AALAR+    +EKLGPTFIK+G
Sbjct:   67 DADGLPLVYNEERIAGYWGGRPGELAGRWTKFAAVSAPWLTKLANAVLSGRLERDRAALAREAVDNLEKLGPTFIKLG 144          
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Match: C1MV80_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MV80_MICPC)

HSP 1 Score: 93.6 bits (231), Expect = 1.890e-20
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   13 DADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVK-DYTSGS--IMKNEAALARDLRIVIEKLGPTFIKVG 246
            DA+GLPLVYD+ +I  +W K+ G L  RW  FLS++VPF+TRV     T G+  + KNEA+LARD R++IEKLGPT+IK G
Sbjct:   35 DAEGLPLVYDAAAIQAFWAKQGGALQRRWGEFLSLSVPFLTRVATLSITGGAAELSKNEASLARDARVIIEKLGPTYIKAG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2089.6318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYF3_ECTSI7.000e-4591.46Predicted unusual protein kinase (ISS) n=1 Tax=Ect... [more]
A0A6H5KBP7_9PHAE7.760e-4491.46Protein kinase domain-containing protein n=1 Tax=E... [more]
W7TP01_9STRA2.120e-2960.98Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A835YL56_9STRA1.600e-2662.03Calcium-activated chloride channel-domain-containi... [more]
A0A7S0G3E2_9RHOD2.330e-2557.32Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1Y5ILL7_OSTTA6.160e-2258.02ABC1 family-domain-containing protein n=2 Tax=Ostr... [more]
A4RWD4_OSTLU5.620e-2158.02Protein kinase domain-containing protein (Fragment... [more]
A0A7S0I2J2_9EUKA1.750e-2054.22Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
D8U214_VOLCA1.870e-2053.85Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
C1MV80_MICPC1.890e-2056.79Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2089contigL-elsbetiae_contig2089:20812..21964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue1.8e-37
Seed eggNOG ortholog2880.D7FYF3
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.847964-CDS-L-elsbetiae_contig2089:20811..208951622815857.847964-CDS-L-elsbetiae_contig2089:20811..20895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 20812..20895 +
1691683150.1582432-CDS-L-elsbetiae_contig2089:20811..208951691683150.1582432-CDS-L-elsbetiae_contig2089:20811..20895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 20812..20895 +
1622815857.8587687-CDS-L-elsbetiae_contig2089:21802..219641622815857.8587687-CDS-L-elsbetiae_contig2089:21802..21964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 21803..21964 +
1691683150.1728334-CDS-L-elsbetiae_contig2089:21802..219641691683150.1728334-CDS-L-elsbetiae_contig2089:21802..21964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2089 21803..21964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2089.6318.1prot_L-elsbetiae_contig2089.6318.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2089 20812..21964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2089.6318.1

>prot_L-elsbetiae_contig2089.6318.1 ID=prot_L-elsbetiae_contig2089.6318.1|Name=mRNA_L-elsbetiae_contig2089.6318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
DVLTDADGLPLVYDSDSIGRYWDKRPGELNGRWTRFLSVTVPFVTRVVKD
YTSGSIMKNEAALARDLRIVIEKLGPTFIKVG
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mRNA from alignment at L-elsbetiae_contig2089:20812..21964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2089.6318.1 ID=mRNA_L-elsbetiae_contig2089.6318.1|Name=mRNA_L-elsbetiae_contig2089.6318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1153bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:20812..21964+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTGCTGACGGATGCTGACGGTCTTCCGCTGGTGTACGACAGCGACTC CATCGGCCGGTACTGGGACAAGCGGCCTGGGGAGGTGAGTGGATAGATGG CGGCGTTGGCGAGTGAAAATACAACCAGGTGCTCGAAATGTCGGCGGTCG CTTGTCTTTAGGCAACGTCTGTCTCCCCCGCCCTGCTGCCGGTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT TCTTCACATTAGCTCGTATAATCGCGATCGCTAATTCCAAAAATCTAGCA ACTCACGGCCCGTGGTCACAGAAGTGCTGTGTAGAGCCATCAGAAGATCC GAAAAGGACACAGACGTTTCTGTTGAACGTAATTCTATACCACCCTCACC CCGAGCCGTTGGGGTTGACCCCGACTGATCTCCTGCCCCAGAAATCTTGC ACTGCCTTGGCGCACTCTGTTCACGCCGGCGGGTGTGGTGTGCCCCCCAC AGAAGGCACCGCAATTGCAACGAGGCACGCGCGCATGCCAAGCCTTCATT TACACACCGCCCTTGAAACCCGACTTGGCCCATTTCATTTCCAACACTGG GTGTGGAACCTGATGAGCCCGAGCGCCGGGCTGCTGAGAACAGGATGACT GTTTATCCAACCAACCCCCCTCGAAACTGTCTGCTCCGTGTCGAGCGCAC GCACCTTTCCGACACCGGACGCGCCCTCGACCTGAAATGGTCACGGCTTG CATGATCAAGTTCCCCCCCCCCCCCGAACACTTTCATTTTTATCATTGCA TCCATCCCTGCGTACTTGACGTGTTTTTTTTTAATGTTTTTAGCTGACCG GGCAATGGAAAAGGTTTCTGTCCGTGACACAGTCCCGTTCGTGACTTTGC ATGATCAATTGGTACCCCGGCCGACCTGCCGACCCCCCATCCCTGTGTAT ATACTTGACTTTTTTTTTTTTTTTTTAATGTATTTATGTAGCTGAACGGG CGGTGGACGAGGTTTCTGTCCGTGACAGTCCCGTTCGTGACGAGGGTGGT CAAGGACTACACCTCGGGCAGCATCATGAAGAACGAGGCAGCCCTCGCGC GAGACCTCCGCATCGTCATCGAGAAGCTGGGCCCGACCTTCATCAAGGTG GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2089:20812..21964+

>mRNA_L-elsbetiae_contig2089.6318.1 ID=mRNA_L-elsbetiae_contig2089.6318.1|Name=mRNA_L-elsbetiae_contig2089.6318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:20812..21964+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTGCTGACGGATGCTGACGGTCTTCCGCTGGTGTACGACAGCGACTC
CATCGGCCGGTACTGGGACAAGCGGCCTGGGGAGGACGTGCTGACGGATG
CTGACGGTCTTCCGCTGGTGTACGACAGCGACTCCATCGGCCGGTACTGG
GACAAGCGGCCTGGGGAGCTGAACGGGCGGTGGACGAGGTTTCTGTCCGT
GACAGTCCCGTTCGTGACGAGGGTGGTCAAGGACTACACCTCGGGCAGCA
TCATGAAGAACGAGGCAGCCCTCGCGCGAGACCTCCGCATCGTCATCGAG
AAGCTGGGCCCGACCTTCATCAAGGTGGGGCTGAACGGGCGGTGGACGAG
GTTTCTGTCCGTGACAGTCCCGTTCGTGACGAGGGTGGTCAAGGACTACA
CCTCGGGCAGCATCATGAAGAACGAGGCAGCCCTCGCGCGAGACCTCCGC
ATCGTCATCGAGAAGCTGGGCCCGACCTTCATCAAGGTGGGG
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