mRNA_L-elsbetiae_contig2089.6315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2089.6315.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI) HSP 1 Score: 492 bits (1266), Expect = 6.100e-145 Identity = 492/969 (50.77%), Postives = 549/969 (56.66%), Query Frame = 1 Query: 25 RSQPESAAPGPARLGAAVDVIVGHLRRLILLQAWAKWEPKLTQGEVAARILERQRQRLRLGSGGD--SGLEPPGGD------------------------------------------RGAEPSPAAQSSSKFCGSGGDGDDGRADGXXXXXXXASLSGGSRGRSRLPPPIRGMATAGSFSSVSNAVDGGGSGNAGRRRSSPAAA----------FSDRNESVGSVAHSRSG---------GTAGTQGMGSTGATADVAMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPG-----MLTMQTCFKQEREAFIRDLQVLHRQLEAKDRDHARRERESQAACAXXXAESRAAQERAALLQKEADGAAAAXXXXXXRAGVASEGLDRQSAEVETLRARLRHTERLHREQMDVERRQRTVAAEETSAERRRLESSALTARKSLADGRRDWAAEKDTLLAAVREAGQRAELCGAEGAEARAHAVLLEERLQQTLEREAALNGEVEALTGSGRDGERRAARAXXXXXXXXXXXXXXEEAFLETVKGLEERAARAEMMQGGXXATREDLDALLEESRQKTLSATSEAQRELTAANLRVVALGQEKSALSAXXXXXXXXXXXXXXXXXXXXXXXXXXAARLEEALSENRRVRSAAAAMRERLEGQWRRREEGLRLALVRARRGEERGGGRGRAXXXXXXXGDAARV-LAAEEVEGLREAVARLTRDKERLLGQLSRSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SVESSREREEG-GSFDDAGHSTRSSGGVSSDQXXXXXXXXXXXXXXXXXXXRGEELEDEEA---------------------------------------------LLMPRGGPAPIPSRFTPRSSTASLGASGXXXXXXXXXXXXXXARPLGRPVAAAALLRASLERERSLRRWEHESLLAV 2568 R PE+ APGPARLGAAVD IVGHLRRL+LLQAWAKW+PKLTQGEVA RILERQR LRL GD SG EP G + +P + + +GG GD + G RGR+RL P G A + S+ S A+ GGSG R RSSPA A F SVG A R+ T QG G + V MLTMQTCF+QERE+FIRDLQVLHRQL+AKDRDHARR+ E QAA + AE+RAA+ERAA L+KE XXXXXX GVA+E LDRQ+A ETLRARLRH ERLH+EQM+VE RQ+ AA ERRRLESSALTARKSL+D RRDWAAEKDTL+AAVREAGQRA+L AEG EA++ A LL ERLQQTLEREAALN EVE+L GS RDGERR ARA EEAFLE+VKGLEERAARAEMMQ G ATREDL ALLEE+RQ +LSA+S+AQR+L+AANLR V LGQE +A A XXXXXXXXXXXXXXXXXXXXXXX RLEEALSE+RR+ +A+A RE L+ QWRRREE RLAL RARRGE GG XXXXXXX L EVE LREAV RL+RDKERLL +L S + XXXXXXXXXXXXXXXXXXXXXXXXXXX S+ R+ G G D G R S G + XXXXXXXXXX + + E LLMPRGGPAP PSRFTPRS LG+ G AR GR VAAAALLR SL RERSLRR EHESLL + Sbjct: 17 RPGPEAPAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVATRILERQR--LRLEGRGDEASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEGRQSAPGSDGET-LARAGGGGDQ-----------EGTPGAGVRGRTRLRPSGVGGIGATTASATSTAL--GGSGGVVRCRSSPAGASRGLNAAREVFRGSGGSVGRAAGGRAXXXXXXXXXXATEAQQGDGGRRTDSMVLQKQHKQVHAGDAHGQARTNGRSSNTHAAARHSSTTPAGGSAATVDGTRMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAEGQAAFSGARAEARAARERAASLRKEXXXXXXXXXXXXXXVGVAAEELDRQTAAAETLRARLRHAERLHKEQMEVEHRQQKAAAXXXXXERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGTEAKSRAALLGERLQQTLEREAALNAEVESLAGSARDGERRVARAVADAARARAAAAAQEEAFLESVKGLEERAARAEMMQDGERATREDLQALLEEARQASLSASSDAQRDLSAANLRAVDLGQEAAAARAEAEXXXXXXXXXXXXXXXXXXXXXXXXXRLEEALSESRRLAAASAEEREALDRQWRRREEEWRLALERARRGEGAGGXXXXXXXXXXXXXXXXXXXLLLAEVEELREAVDRLSRDKERLLDRLLSSGSSPSEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXPPDEWRDGERCSLGKGDTRQRGRGRADGDGEIDRGSEGADVGREEXXXXXXXXXXGRGARGVARSSVAEAEKRHSQRGGNVDGGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMPRGGPAPTPSRFTPRSGAVGLGSGGGGPGRWVA------ARSAGRSVAAAALLRTSLARERSLRRREHESLLGL 963
BLAST of mRNA_L-elsbetiae_contig2089.6315.1 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE) HSP 1 Score: 463 bits (1192), Expect = 2.210e-134 Identity = 465/943 (49.31%), Postives = 528/943 (55.99%), Query Frame = 1 Query: 25 RSQPESAAPGPARLGAAVDVIVGHLRRLILLQAWAKWEPKLTQGEVAARILERQRQRLRL-GSGGDSG----LEPPGGDRGAEPSPAAQSSSKFCGSGGDGDD-GRADGXXXXXXXASLSGGSRGRSRLPPPIRGMATAGSFSSVSNAVDGGGSGNAGRRRSSPAAAFSDRN-------ESVGSVAHSRSGGTAGT------QGMGSTGATA--------DVAMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGMLTMQTCFKQEREAFIRDLQVLHRQLEAKDRDHARRERESQAACAXXXAESRAAQERAALLQKEADGAAAAXXXXXXRAGVASEGLDRQSAEVETLRARLRHTERLHREQMDVERRQRTVAAEETSAERRRLESSALTARKSLADGRRDWAAEKDTLLAAVREAGQRAELCGAEGAEARAHAVLLEERLQQTLEREAALNGEVEALTGSGRDGERRAARAXXXXXXXXXXXXXX------EEAFLETVKGLEERAARAEMMQGGXXATREDLDALLEESRQKTLSATSEAQRELTAANLRVVALGQEKSALSAXXXXXXXXXXXXXXXXXXXXXXXXXXAARLEEALSENRRVRSAAAAMRERLEGQWRRREEGLRLALVRARRGEERGGGRGRAXXXXXXXGDAAR-VLAAEEVEGLREAVARLTRDKERLLGQLSRSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------SVESSREREEGGSFDDAGHST----------RSSGGVS-SDQXXXXXXXXXXXXXXXXXXXRGEELEDEEA---------------LLMPRGGPAPIPSRFTPRSSTASLGASGXXXXXXXXXXXXXXARPLGRPVAAAALLRASLERERSLRRWEHESLLAVLREGNV 2586 R PE+ APGP RLGAAVD IVGHLRRL+LLQAWAKW+PKLTQ RLRL G GG+ G E + + QS+ G DG+ RA G G RGR+RL P R + G+ ++ S + GGSG R RSSPA N S GS + GG AG QG G G + + MLTMQTCF+QERE+FIRDLQVLHRQL+AKDRDHARR+ ESQAA + AE+RAA+ERAA L+KE XXXXX R GVA+E LDRQ+A ETLRARLRH ERLH+EQM+VE RQ+ AAE AERRRLESSALTARKSL+D RRDWAAEKDTL+AAVREAGQRA+L AEG+EA++ A LLEERLQQTLEREAALN EVE+L GS RDGERR ARA EEA+LE+VKGLEERA+RAEMMQ G ATREDL ALLEE+RQ +LSA+S+AQR+L+AAN+R V LGQE +A A XXXXXXXXXXXXXXXXXXX RLEEALSE+RR+ +A+A RE L+ QWRRREE RLAL RARR XXXXXXX VL EVE LREAV RL+RDKERLL +L S XXXXXXXXXXXXXXXXXX XXXXXXXXX + + E + GG DAG R++ GV+ S GE D LLMPRGGPAP PSR TPRS SLG+ G GR VAA R SL RERSLRR EHESLL +LR NV Sbjct: 16 RPGPEAPAPGPVRLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ-------------RLRLEGRGGELGHGAACEEXXXXXXDDEAEGRQSAP-----GSDGETLARASGGGDQEGVPGA--GVRGRARLRPTGRRI---GALTASSRSTALGGSGGVVRCRSSPAGTSRGLNADREAFRSSGGSARRAAGGGVAGAMAAETQQGDGECGTASRGLQKQHKQLHAGDAHGETRPNGRSSNTHTAARHSCTTPTSGIAAAATGGDGTSMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAESQAAFSRVRAEARAARERAASLRKETXXXXXXXXXXXARVGVAAEELDRQAAAAETLRARLRHAERLHKEQMEVEHRQQKAAAEXXXAERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGSEAKSRAALLEERLQQTLEREAALNAEVESLAGSARDGERRVARAVADAARARAAAAAQVGPGRGEEAYLESVKGLEERASRAEMMQHGERATREDLQALLEEARQNSLSASSDAQRDLSAANVRAVDLGQEVAAARAEAESFRRXXXXXXXXXXXXXXXXXXXXXRLEEALSESRRLAAASAEEREALDRQWRRREEEWRLALERARRXXXXXXXXXXXXXXXXXXXXXXXXVLLLAEVEQLREAVNRLSRDKERLLDRLLSSGXXXXXXXXXXXXXXXXXXXDHEDRRCHRXXXXXXXXXRPRPGGPPNEWREGERCSLGRGGTRQRGRGRAADGDGEIDRGGERADAGREEGEXXXXXXXXRAARGVARSFVTEAEKRHNQRGGNVNGGPSSGERSRDXXXXXXXXXXXXXXXXXXLLMPRGGPAPTPSRLTPRSGAVSLGSGGGGP---------------GRWVAA----RTSLARERSLRRREHESLLGLLRRENV 916 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2089.6315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2089.6315.1 >prot_L-elsbetiae_contig2089.6315.1 ID=prot_L-elsbetiae_contig2089.6315.1|Name=mRNA_L-elsbetiae_contig2089.6315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1147bp MMPPYKPRRSQPESAAPGPARLGAAVDVIVGHLRRLILLQAWAKWEPKLTback to top mRNA from alignment at L-elsbetiae_contig2089:260..12095- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2089.6315.1 ID=mRNA_L-elsbetiae_contig2089.6315.1|Name=mRNA_L-elsbetiae_contig2089.6315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11836bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:260..12095- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2089:260..12095- >mRNA_L-elsbetiae_contig2089.6315.1 ID=mRNA_L-elsbetiae_contig2089.6315.1|Name=mRNA_L-elsbetiae_contig2089.6315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6882bp|location=Sequence derived from alignment at L-elsbetiae_contig2089:260..12095- (Laminarionema elsbetiae ELsaHSoW15)back to top |