mRNA_L-elsbetiae_contig20870.6313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20870.6313.1
Unique NamemRNA_L-elsbetiae_contig20870.6313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20870.6313.1 vs. uniprot
Match: Q8QN98_ESV1K (EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN98_ESV1K)

HSP 1 Score: 141 bits (355), Expect = 1.230e-35
Identity = 88/255 (34.51%), Postives = 137/255 (53.73%), Query Frame = 1 
Query:    1 NGVRLTIVCDQCATSSDLVTKTTALQMGATLADLNSIHCMYKRNPHYRSASDMQLFVREEIDVLATIATAKKRRLKEEAMCKKQESDARQQRVKRS-RIESLAKRTQSLGGIV-----PTPGLVCGDFLSVHTKNPAVGTRSLLRRKAMWSRLATTEIPVAVQIFEWAVRNKQTNIAPAGALEEIRHEKHLFGRVAVVEGHRVLSFLDEVDRLTLLSLDPVFQETLYALPVRNISGELSKICDTVSRRLDLPFST 747
            NG+ LT VC+ C  S++L+TKT+A+ +GA + DL+ +    + NP+YR+A+   LF+ EE+  +A IA A + R +    CK +E  AR +R+K   R   L KR QS    +     PTPGLV GDF +  TK P +    L +R A+WS L    +   V +F +   N+    +       +++  H   RV + EG+RVL FL  ++RL +    P   + L+ LPV  +S ++  +C   S +L+   ST
Sbjct:   18 NGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANADRERRECARKCK-EEIQARAKRMKHDDRARCLEKRIQSATSKIKTVSPPTPGLVSGDFCTSTTKTPKISVAKLAKRVAIWSSLNNFSLSHRVNLFRFGCANELYTFSGKEIESSVQNVHHSLDRVVLREGNRVLEFLTPMERLHVSRAVPFTHQELHGLPVSAMSDDMYALCQYTSAKLEKMRST 271
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BLAST of mRNA_L-elsbetiae_contig20870.6313.1 vs. uniprot
Match: D8LPL0_ECTSI (EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL0_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 4.810e-34
Identity = 85/255 (33.33%), Postives = 138/255 (54.12%), Query Frame = 1 
Query:    1 NGVRLTIVCDQCATSSDLVTKTTALQMGATLADLNSIHCMYKRNPHYRSASDMQLFVREEIDVLATIATAKKRRLKEEAMCKKQESDARQQRVKRS-RIESLAKRTQSLGGIV-----PTPGLVCGDFLSVHTKNPAVGTRSLLRRKAMWSRLATTEIPVAVQIFEWAVRNKQTNIAPAGALEEIRHEKHLFGRVAVVEGHRVLSFLDEVDRLTLLSLDPVFQETLYALPVRNISGELSKICDTVSRRLDLPFST 747
            NG+ LT VC+ C  S++L+TKT+A+ +GA + DL+ +    + NP+YR+A+   LF+ EE+  +A IA A + R +E A   K+E  +R +R+K   R + L KR Q+    +     PTPGLV GDF +  TK P +    L +R A+W  L+   +P  V +F +   N+   ++       +    +   +V + EG+RVL FL  ++RL      P   + L+ LPV  +S ++  +C   S +L+   ST
Sbjct:   18 NGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANAARER-RECARKSKEEIQSRAKRMKHDDRSKCLEKRIQTATSRIKPVGPPTPGLVSGDFCTSATKTPKISVAKLAKRVAIWRSLSNLSLPPRVNLFRFGCANELYALSGEEIESAVASAHYSLDKVVLGEGNRVLQFLSPMERLHATRAVPSMHQELHGLPVSAMSDDMYALCQYTSVKLEKMRST 271
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20870.6313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN98_ESV1K1.230e-3534.51EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL0_ECTSI4.810e-3433.33EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20870contigL-elsbetiae_contig20870:14..760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-191
Ec32 orthologEc-06_005010.1
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815857.4343874-CDS-L-elsbetiae_contig20870:13..7601622815857.4343874-CDS-L-elsbetiae_contig20870:13..760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20870 14..760 -
1691683149.869719-CDS-L-elsbetiae_contig20870:13..7601691683149.869719-CDS-L-elsbetiae_contig20870:13..760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20870 14..760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20870.6313.1prot_L-elsbetiae_contig20870.6313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20870 14..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20870.6313.1

>prot_L-elsbetiae_contig20870.6313.1 ID=prot_L-elsbetiae_contig20870.6313.1|Name=mRNA_L-elsbetiae_contig20870.6313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
NGVRLTIVCDQCATSSDLVTKTTALQMGATLADLNSIHCMYKRNPHYRSA
SDMQLFVREEIDVLATIATAKKRRLKEEAMCKKQESDARQQRVKRSRIES
LAKRTQSLGGIVPTPGLVCGDFLSVHTKNPAVGTRSLLRRKAMWSRLATT
EIPVAVQIFEWAVRNKQTNIAPAGALEEIRHEKHLFGRVAVVEGHRVLSF
LDEVDRLTLLSLDPVFQETLYALPVRNISGELSKICDTVSRRLDLPFST
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mRNA from alignment at L-elsbetiae_contig20870:14..760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20870.6313.1 ID=mRNA_L-elsbetiae_contig20870.6313.1|Name=mRNA_L-elsbetiae_contig20870.6313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig20870:14..760- (Laminarionema elsbetiae ELsaHSoW15)
AATGGCGTGCGCCTCACGATCGTGTGTGACCAGTGCGCCACTTCGAGCGA
TCTCGTGACCAAGACTACGGCCCTCCAAATGGGAGCAACTCTAGCCGACC
TGAACAGCATCCACTGCATGTACAAAAGAAACCCCCACTACAGAAGCGCA
TCCGATATGCAGCTGTTTGTGCGCGAGGAGATTGATGTTCTTGCCACGAT
AGCTACCGCCAAAAAGCGTCGCCTAAAAGAGGAAGCCATGTGCAAGAAGC
AGGAGTCGGATGCCAGGCAGCAGCGCGTTAAGAGGTCGAGAATCGAGAGT
CTCGCCAAGCGAACCCAGAGCCTCGGCGGCATCGTCCCAACCCCGGGTTT
GGTGTGCGGAGATTTCTTAAGCGTCCACACCAAGAACCCGGCCGTCGGGA
CGCGCAGCCTGTTGAGGCGCAAGGCCATGTGGAGTCGACTAGCGACGACT
GAGATTCCCGTTGCCGTCCAGATATTCGAGTGGGCGGTGAGGAACAAACA
AACTAACATCGCACCCGCCGGCGCTCTGGAGGAGATCCGCCACGAGAAAC
ACCTGTTCGGTAGGGTTGCCGTAGTGGAGGGGCACAGGGTCCTTTCCTTC
CTCGATGAGGTTGACCGCCTTACCCTGTTGAGCCTGGACCCTGTGTTCCA
GGAGACTCTCTACGCCCTTCCCGTTCGAAACATATCTGGCGAATTGTCGA
AAATATGCGACACGGTTTCCAGGCGTCTGGACCTGCCCTTTTCTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20870:14..760-

>mRNA_L-elsbetiae_contig20870.6313.1 ID=mRNA_L-elsbetiae_contig20870.6313.1|Name=mRNA_L-elsbetiae_contig20870.6313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig20870:14..760- (Laminarionema elsbetiae ELsaHSoW15)
AATGGCGTGCGCCTCACGATCGTGTGTGACCAGTGCGCCACTTCGAGCGA
TCTCGTGACCAAGACTACGGCCCTCCAAATGGGAGCAACTCTAGCCGACC
TGAACAGCATCCACTGCATGTACAAAAGAAACCCCCACTACAGAAGCGCA
TCCGATATGCAGCTGTTTGTGCGCGAGGAGATTGATGTTCTTGCCACGAT
AGCTACCGCCAAAAAGCGTCGCCTAAAAGAGGAAGCCATGTGCAAGAAGC
AGGAGTCGGATGCCAGGCAGCAGCGCGTTAAGAGGTCGAGAATCGAGAGT
CTCGCCAAGCGAACCCAGAGCCTCGGCGGCATCGTCCCAACCCCGGGTTT
GGTGTGCGGAGATTTCTTAAGCGTCCACACCAAGAACCCGGCCGTCGGGA
CGCGCAGCCTGTTGAGGCGCAAGGCCATGTGGAGTCGACTAGCGACGACT
GAGATTCCCGTTGCCGTCCAGATATTCGAGTGGGCGGTGAGGAACAAACA
AACTAACATCGCACCCGCCGGCGCTCTGGAGGAGATCCGCCACGAGAAAC
ACCTGTTCGGTAGGGTTGCCGTAGTGGAGGGGCACAGGGTCCTTTCCTTC
CTCGATGAGGTTGACCGCCTTACCCTGTTGAGCCTGGACCCTGTGTTCCA
GGAGACTCTCTACGCCCTTCCCGTTCGAAACATATCTGGCGAATTGTCGA
AAATATGCGACACGGTTTCCAGGCGTCTGGACCTGCCCTTTTCTACCAAT
GGCGTGCGCCTCACGATCGTGTGTGACCAGTGCGCCACTTCGAGCGATCT
CGTGACCAAGACTACGGCCCTCCAAATGGGAGCAACTCTAGCCGACCTGA
ACAGCATCCACTGCATGTACAAAAGAAACCCCCACTACAGAAGCGCATCC
GATATGCAGCTGTTTGTGCGCGAGGAGATTGATGTTCTTGCCACGATAGC
TACCGCCAAAAAGCGTCGCCTAAAAGAGGAAGCCATGTGCAAGAAGCAGG
AGTCGGATGCCAGGCAGCAGCGCGTTAAGAGGTCGAGAATCGAGAGTCTC
GCCAAGCGAACCCAGAGCCTCGGCGGCATCGTCCCAACCCCGGGTTTGGT
GTGCGGAGATTTCTTAAGCGTCCACACCAAGAACCCGGCCGTCGGGACGC
GCAGCCTGTTGAGGCGCAAGGCCATGTGGAGTCGACTAGCGACGACTGAG
ATTCCCGTTGCCGTCCAGATATTCGAGTGGGCGGTGAGGAACAAACAAAC
TAACATCGCACCCGCCGGCGCTCTGGAGGAGATCCGCCACGAGAAACACC
TGTTCGGTAGGGTTGCCGTAGTGGAGGGGCACAGGGTCCTTTCCTTCCTC
GATGAGGTTGACCGCCTTACCCTGTTGAGCCTGGACCCTGTGTTCCAGGA
GACTCTCTACGCCCTTCCCGTTCGAAACATATCTGGCGAATTGTCGAAAA
TATGCGACACGGTTTCCAGGCGTCTGGACCTGCCCTTTTCTACC
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