mRNA_L-elsbetiae_contig2086.6307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2086.6307.1
Unique NamemRNA_L-elsbetiae_contig2086.6307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2086.6307.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.220e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 3 
Query:   51 AEYCRDHAQDGMVDVKNKRCTHCGCTKYPSYGKAG 155
            AE+C  H Q  MV+V +KRC H GCTK PSYG+AG
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAG 56
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BLAST of mRNA_L-elsbetiae_contig2086.6307.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.310e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:    9 CTKQPSYGKTVGGKAEYCRDHAQDGMVDVKNKRCTHCGCTKYPSYGKAG 155
            CT  PSYG  +  KAE+C+ HA+ GM++V  ++C+H GC K  S+GK G
Sbjct:  233 CTTWPSYGARLK-KAEFCKRHAKQGMINVVTRKCSHPGCIKSASFGKHG 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2086.6307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE3.220e-562.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J913_9PHAE7.310e-548.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2086contigL-elsbetiae_contig2086:10393..12476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1550
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2086.6307.1prot_L-elsbetiae_contig2086.6307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2086 10476..11372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.8431072-UTR-L-elsbetiae_contig2086:10392..104751622815856.8431072-UTR-L-elsbetiae_contig2086:10392..10475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 10393..10475 +
1691683149.4588473-UTR-L-elsbetiae_contig2086:10392..104751691683149.4588473-UTR-L-elsbetiae_contig2086:10392..10475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 10393..10475 +
1622815856.8656237-UTR-L-elsbetiae_contig2086:11372..113741622815856.8656237-UTR-L-elsbetiae_contig2086:11372..11374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 11373..11374 +
1691683149.481469-UTR-L-elsbetiae_contig2086:11372..113741691683149.481469-UTR-L-elsbetiae_contig2086:11372..11374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 11373..11374 +
1622815856.8758607-UTR-L-elsbetiae_contig2086:11908..124761622815856.8758607-UTR-L-elsbetiae_contig2086:11908..12476Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 11909..12476 +
1691683149.4939585-UTR-L-elsbetiae_contig2086:11908..124761691683149.4939585-UTR-L-elsbetiae_contig2086:11908..12476Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2086 11909..12476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.8548815-CDS-L-elsbetiae_contig2086:10475..113721622815856.8548815-CDS-L-elsbetiae_contig2086:10475..11372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 10476..11372 +
1691683149.469447-CDS-L-elsbetiae_contig2086:10475..113721691683149.469447-CDS-L-elsbetiae_contig2086:10475..11372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2086 10476..11372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2086.6307.1

>prot_L-elsbetiae_contig2086.6307.1 ID=prot_L-elsbetiae_contig2086.6307.1|Name=mRNA_L-elsbetiae_contig2086.6307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MVDVKNKRCTHCGCTKYPSYGKAGGKAGYCRDHAQDGMLNVKSKKICIHP
GCTKQPSYGKAGGRVEFCRDHAEDEMVNVKHKTCTDHGCTRKPSYGKADD
GKAQYCRDHAKDGMVDVSSKRCSHHGCNKHPSYGNAGGKAEYCRDHAEGR
MVNVKLKTCTHHGCTKGSSYGRAGGRAEFCRDHAEDGMVDVKHKVCADHG
CTKQPSYGKAGGKKEFCRDHAEEGMVSLAKKQGMLSLRKRRSVDATVDGK
QKRPRFVKEEAVEGRVRAAAATTTVAEVGATQPFMGLGKGRRERQNDK*
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mRNA from alignment at L-elsbetiae_contig2086:10393..12476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2086.6307.1 ID=mRNA_L-elsbetiae_contig2086.6307.1|Name=mRNA_L-elsbetiae_contig2086.6307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2084bp|location=Sequence derived from alignment at L-elsbetiae_contig2086:10393..12476+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACAGTTGCACCAAACAGCCGTCGTACGGCAAGACTGTTGGCGGCAAG
GCGGAGTACTGCCGTGACCATGCCCAGGACGGGATGGTGGACGTGAAGAA
CAAGAGATGCACTCACTGCGGTTGTACCAAGTACCCGTCATACGGCAAGG
CTGGCGGCAAGGCGGGGTACTGCCGTGACCATGCCCAGGACGGGATGTTG
AACGTGAAGAGCAAGAAGATATGCATCCACCCCGGTTGCACCAAGCAGCC
GTCGTACGGCAAGGCTGGCGGCAGAGTGGAGTTCTGCCGTGACCATGCCG
AGGACGAGATGGTGAACGTGAAGCACAAGACATGCACTGACCACGGTTGT
ACCAGGAAGCCGTCGTACGGCAAGGCTGACGATGGCAAGGCGCAGTACTG
CCGTGACCATGCCAAGGACGGGATGGTGGACGTGAGTAGCAAGAGATGTT
CCCACCACGGTTGTAACAAGCACCCGTCATACGGCAACGCTGGCGGCAAG
GCGGAGTACTGTCGTGATCATGCCGAGGGCAGGATGGTGAATGTGAAGCT
CAAGACATGCACCCACCACGGTTGCACCAAGGGGTCGTCGTACGGCAGAG
CTGGCGGCAGAGCGGAGTTCTGCCGTGACCATGCCGAGGACGGGATGGTG
GACGTCAAGCACAAGGTATGCGCTGACCACGGTTGTACCAAGCAGCCGTC
GTACGGCAAGGCTGGCGGTAAGAAAGAGTTCTGCCGTGACCATGCCGAAG
AGGGGATGGTGAGCTTGGCGAAGAAACAAGGTATGCTTAGTCTCAGGAAA
AGGCGCTCCGTGGACGCCACTGTAGACGGAAAACAGAAGCGACCCCGCTT
TGTCAAAGAAGAAGCCGTAGAGGGAAGGGTGAGGGCAGCAGCGGCAACAA
CGACCGTGGCCGAGGTGGGCGCCACACAACCGTTCATGGGCTTAGGGAAA
GGGCGAAGAGAGAGACAGAATGACAAATAAAGGTGAGCTTCCCCCGGCGA
ACACCGTTTTGATTTTCGAACGAATGCGCACTCGTGTCTATGTTTGAGGT
GTATGTCAGACCATGGAAATGCTGCATGTACGGCCACGGGCGTGAGAGCA
AGAGGCCGCTTGTAGCGTGGGGTGGCGATAGCAAGTGGCCGCACGCAGAA
ACGCCAGGATTCCCCATCCCGCCCCTGCTCATATTGTAGCTACTCCAAAA
CATTTTTTTGAGTATTTGGCGTCTTCCGAAAAATGTGATAATTTTGCTCC
ATTTTCAGGCGTGTCTGCAGACATAAAGAGGGTGGCCACATCGGGCCAAG
CACTGTGGAGGGGTGCCCTGAATAGGAGGGTAGTAGTGGCTGCCGCCTGA
GGGAAAAGTTACCTCTCAACAGCCAGCGCAGCTCTAGAGCAGACGATACA
GCAGTGCAGGCAATGCCAATGTACCATGTACCAGGGTACGTTTGTTTCTC
CTTTCCATCTGTCTTCACCAGCCCTTGTGTTCCTCCCTCTCGTTACTATT
GTGGCTCCCTGTACAGCTGCGCTTGCTGCTCAAAGGTGCCTTCTTTCTCC
GCCATGTCGGGAGCCACTACCCTCCTAGCGAAGACACCCATCCCGAGCGC
TAGTGCTTGGAGCAACGTGGCCGATATTTTCATGTTCTGCAAGACACGGG
TAAAACTCGAGTGGAATGTACTCCTGTAAGATACACGTATTTTAAGAAAT
CTCGCATGAAGACCACGGGGCTAGATAGAGGTGGCAGAGGTGCCTGCTGG
TTTGTGTAGTTTGTCGAGCTGTTGTCTAATGACAGCAATAAGTGGGTGTG
TTGCACCAGTCCCTGTGTGGGATTTGCGATATTTCAGACTGCACGGTAAA
GATAGACACAGTCCGTCAGCAGTATACGGGAGTGGCGGCGACTGCACTTT
TCTTGCCTTGCCTCATGCATTTGCCGGTGCTTGTTCGAACCGTAGTTTTT
TTATTGTTTGACTGGCACATAACCTTGGCGGAAGCAAATCGAGCGCCACA
GTCAGCAGTCTATGTCCACTCTTGATGGTCCGGCAGAACGCACGTACCTG
TCCTTTTTGAGAGACGAATCGATTTTTCCTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2086:10393..12476+

>mRNA_L-elsbetiae_contig2086.6307.1 ID=mRNA_L-elsbetiae_contig2086.6307.1|Name=mRNA_L-elsbetiae_contig2086.6307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig2086:10393..12476+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACGTGAAGAACAAGAGATGCACTCACTGCGGTTGTACCAAGTA
CCCGTCATACGGCAAGGCTGGCGGCAAGGCGGGGTACTGCCGTGACCATG
CCCAGGACGGGATGTTGAACGTGAAGAGCAAGAAGATATGCATCCACCCC
GGTTGCACCAAGCAGCCGTCGTACGGCAAGGCTGGCGGCAGAGTGGAGTT
CTGCCGTGACCATGCCGAGGACGAGATGGTGAACGTGAAGCACAAGACAT
GCACTGACCACGGTTGTACCAGGAAGCCGTCGTACGGCAAGGCTGACGAT
GGCAAGGCGCAGTACTGCCGTGACCATGCCAAGGACGGGATGGTGGACGT
GAGTAGCAAGAGATGTTCCCACCACGGTTGTAACAAGCACCCGTCATACG
GCAACGCTGGCGGCAAGGCGGAGTACTGTCGTGATCATGCCGAGGGCAGG
ATGGTGAATGTGAAGCTCAAGACATGCACCCACCACGGTTGCACCAAGGG
GTCGTCGTACGGCAGAGCTGGCGGCAGAGCGGAGTTCTGCCGTGACCATG
CCGAGGACGGGATGGTGGACGTCAAGCACAAGGTATGCGCTGACCACGGT
TGTACCAAGCAGCCGTCGTACGGCAAGGCTGGCGGTAAGAAAGAGTTCTG
CCGTGACCATGCCGAAGAGGGGATGGTGAGCTTGGCGAAGAAACAAGGTA
TGCTTAGTCTCAGGAAAAGGCGCTCCGTGGACGCCACTGTAGACGGAAAA
CAGAAGCGACCCCGCTTTGTCAAAGAAGAAGCCGTAGAGGGAAGGGTGAG
GGCAGCAGCGGCAACAACGACCGTGGCCGAGGTGGGCGCCACACAACCGT
TCATGGGCTTAGGGAAAGGGCGAAGAGAGAGACAGAATGACAAATAAATG
GTGGACGTGAAGAACAAGAGATGCACTCACTGCGGTTGTACCAAGTACCC
GTCATACGGCAAGGCTGGCGGCAAGGCGGGGTACTGCCGTGACCATGCCC
AGGACGGGATGTTGAACGTGAAGAGCAAGAAGATATGCATCCACCCCGGT
TGCACCAAGCAGCCGTCGTACGGCAAGGCTGGCGGCAGAGTGGAGTTCTG
CCGTGACCATGCCGAGGACGAGATGGTGAACGTGAAGCACAAGACATGCA
CTGACCACGGTTGTACCAGGAAGCCGTCGTACGGCAAGGCTGACGATGGC
AAGGCGCAGTACTGCCGTGACCATGCCAAGGACGGGATGGTGGACGTGAG
TAGCAAGAGATGTTCCCACCACGGTTGTAACAAGCACCCGTCATACGGCA
ACGCTGGCGGCAAGGCGGAGTACTGTCGTGATCATGCCGAGGGCAGGATG
GTGAATGTGAAGCTCAAGACATGCACCCACCACGGTTGCACCAAGGGGTC
GTCGTACGGCAGAGCTGGCGGCAGAGCGGAGTTCTGCCGTGACCATGCCG
AGGACGGGATGGTGGACGTCAAGCACAAGGTATGCGCTGACCACGGTTGT
ACCAAGCAGCCGTCGTACGGCAAGGCTGGCGGTAAGAAAGAGTTCTGCCG
TGACCATGCCGAAGAGGGGATGGTGAGCTTGGCGAAGAAACAAGGTATGC
TTAGTCTCAGGAAAAGGCGCTCCGTGGACGCCACTGTAGACGGAAAACAG
AAGCGACCCCGCTTTGTCAAAGAAGAAGCCGTAGAGGGAAGGGTGAGGGC
AGCAGCGGCAACAACGACCGTGGCCGAGGTGGGCGCCACACAACCGTTCA
TGGGCTTAGGGAAAGGGCGAAGAGAGAGACAGAATGACAAATAA
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