mRNA_L-elsbetiae_contig20859.6306.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20859.6306.1
Unique NamemRNA_L-elsbetiae_contig20859.6306.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: D7G8F1_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.420e-24
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  149 QKIKLGRRETFPDIVHRMPEHELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            Q  KLGRRE F DI  R+P+ +LRL MTMTQ+ AAK IGISPTTLKKLCR+YGI RWP+RQIAG  R   R  E+L
Sbjct:   13 QSEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGISRWPYRQIAGKTRAVDRLGELL 88
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.040e-8
Identity = 35/107 (32.71%), Postives = 57/107 (53.27%), Query Frame = 2 
Query:   71 AVAACSNQEQQQPSNMKGRRYSSAASQKIKLG---RRETFPDIVHRMPEHELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEMLAT 382
            A A  + +  +  S   G R +S +S  ++ G   +R+T  D+  R+P   L     +    AA+ + +S T LKKLCR YG+ RWP RQ++   +TTS+  + + T
Sbjct:  429 AAATTATRAAKTSSGSSGVRTASVSSAFLRRGGSLKRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKT 535
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.810e-8
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 2 
Query:  122 GRRYSSAASQKIKLG---RRETFPDIVHRMPEHELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            G R +SA+S  ++ G   +R+T  D+  R+P   L     +    AA+ + +S T LKKLCR YG+ RWP RQ++   +TTS+  + +
Sbjct:  446 GVRTASASSAFLRRGSSLKRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKI 533
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: UPI001ADD4CFD (protein NLP3-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADD4CFD)

HSP 1 Score: 56.6 bits (135), Expect = 8.630e-7
Identity = 21/55 (38.18%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  212 ELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            EL+   + +   AA+++G+ PTT+K++CR +GIPRWPFR+I+   R+  +   ++
Sbjct:  262 ELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVM 316
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: J3L9F5_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3L9F5_ORYBR)

HSP 1 Score: 56.6 bits (135), Expect = 8.740e-7
Identity = 21/55 (38.18%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  212 ELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            EL+   + +   AA+++G+ PTT+K++CR +GIPRWPFR+I+   R+  +   ++
Sbjct:  303 ELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVM 357
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A0D9VBZ3_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VBZ3_9ORYZ)

HSP 1 Score: 56.6 bits (135), Expect = 8.960e-7
Identity = 21/55 (38.18%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  212 ELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            EL+   + +   AA+++G+ PTT+K++CR +GIPRWPFR+I+   R+  +   ++
Sbjct:  424 ELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVM 478
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A443P1A2_9MAGN (Protein NLP4 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443P1A2_9MAGN)

HSP 1 Score: 56.6 bits (135), Expect = 9.290e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  248 AAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSR 361
            AAK+IG+ PTTLK++CR YGIPRWP R I   G +  R
Sbjct:  659 AAKSIGVCPTTLKRICRQYGIPRWPSRTIRKVGHSLER 696
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BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.790e-7
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 2 
Query:  200 MPEHELRLLMTMTQLQAAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTS 358
            M    L  L      +AAK +G+S T +K+LCR YGI +WPFR +    RT S
Sbjct:    4 MKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMS 56
[Close]
BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A835IEC5_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IEC5_9MAGN)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-6
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  248 AAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            AAK++G+ PTT+K++CRH+GI RWP R+I    R+ S+ N ++
Sbjct:  578 AAKSLGVCPTTMKRICRHHGISRWPSRKINKVNRSLSKLNHVI 620
[Close]
BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Match: A0A0D3F0E0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3F0E0_9ORYZ)

HSP 1 Score: 55.8 bits (133), Expect = 1.350e-6
Identity = 19/43 (44.19%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  248 AAKTIGISPTTLKKLCRHYGIPRWPFRQIAGTGRTTSRPNEML 376
            AA+++G+ PTT+K++CR +GIPRWPFR+I+   R+  +   ++
Sbjct:   85 AARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVM 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20859.6306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8F1_ECTSI7.420e-2467.11Putative NIN-like transcription factor n=1 Tax=Ect... [more]
D7FS12_ECTSI3.040e-832.71Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KE17_9PHAE5.810e-836.36RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI001ADD4CFD8.630e-738.18protein NLP3-like n=1 Tax=Oryza brachyantha TaxID=... [more]
J3L9F5_ORYBR8.740e-738.18Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
A0A0D9VBZ3_9ORYZ8.960e-738.18Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A443P1A2_9MAGN9.290e-760.53Protein NLP4 n=1 Tax=Cinnamomum micranthum f. kane... [more]
A0A835YUV9_9STRA9.790e-743.40RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835IEC5_9MAGN1.270e-648.84Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A0D3F0E0_9ORYZ1.350e-644.19Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20859contigL-elsbetiae_contig20859:1128..2413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.7821689-CDS-L-elsbetiae_contig20859:1127..13831622815856.7821689-CDS-L-elsbetiae_contig20859:1127..1383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20859 1128..1383 +
1691683149.4319127-CDS-L-elsbetiae_contig20859:1127..13831691683149.4319127-CDS-L-elsbetiae_contig20859:1127..1383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20859 1128..1383 +
1622815856.801172-CDS-L-elsbetiae_contig20859:2284..24121622815856.801172-CDS-L-elsbetiae_contig20859:2284..2412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20859 2285..2412 +
1691683149.4453266-CDS-L-elsbetiae_contig20859:2284..24121691683149.4453266-CDS-L-elsbetiae_contig20859:2284..2412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20859 2285..2412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20859.6306.1prot_L-elsbetiae_contig20859.6306.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20859 1128..2412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20859.6306.1

>prot_L-elsbetiae_contig20859.6306.1 ID=prot_L-elsbetiae_contig20859.6306.1|Name=mRNA_L-elsbetiae_contig20859.6306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
TQTGSVRPHTRSFETQHLSYSSNGSGSLFEPGAAAAFQHERAPLFLCCKP
ENKAGSSRDLPGHCAQDAGARTSPAHDDDTTPSSKDHRHLPHHTQETLPA
LRNTPLALPPDCGYRSNHEPSQRNARHA
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mRNA from alignment at L-elsbetiae_contig20859:1128..2413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20859.6306.1 ID=mRNA_L-elsbetiae_contig20859.6306.1|Name=mRNA_L-elsbetiae_contig20859.6306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1286bp|location=Sequence derived from alignment at L-elsbetiae_contig20859:1128..2413+ (Laminarionema elsbetiae ELsaHSoW15)
ACACAAACCGGCAGTGTGAGGCCGCACACAAGATCCTTCGAGACCCAGCA
TCTCTCCTACAGTAGTAACGGCAGTGGCAGCTTGTTCGAACCAGGAGCAG
CAGCAGCCTTCCAACATGAAAGGGCGCCGTTATTCCTCTGCTGCAAGCCA
GAAAATAAAGCTGGGTCGTCGAGAGACCTTCCCGGACATTGTGCACAGGA
TGCCGGAGCACGAACTTCGCCTGCTCATGACGATGACACAACTCCAAGCA
GCAAAGGTGCTCACTCTGGGTTAAGGGTTCATTAGGTTTATTATGGGTAC
GCAAGTTCGACAAGATACTAGTGAATTGCAGCTTTGTATCATCTATGAAC
TACTGCCAATTGGTGCTCTCTGATCACATGATGTATCATGTAGTGGACCA
TTGTAAACCCAAGGTCCTGATACCAGGTACAGTAGTCGCAGCCTAGTGAC
GACGTGGATTGGGCAATACTTGAACGGCGAAGGCCAATCGATGTCTTTGT
GTTGTTGCTCATAATGCTTATCACTGTGATCGCTTTTCGGTCGAAGGTGG
GAGCGGGCTGTGCAGGACCCAAAGAAAGGTATATTCCAGTTTCCTTCGGT
CTCTCTACACACACCGAACCTCACGCCTCTGGGTACAAACGAGACGGTGC
CCGTACACTCGGGGAGGGTAGGGTCGAGGCCGTATTTAAGAGGATGTATC
ATTTCCGCCACCATCGTATTCCATATATCTACTACAGCAAGTCTCCGAAA
GGAGCTATGTACTGTATCTACATAGATTATTGTGCAAGACGCAGGCGCCA
AGGCCGCAAAGCCTGCACGAGGGTGTCTCTTGTTGTGAGCGAACGAGTCG
TTTGACGAAACGTAACGTTGCAATGATGTAGTACAAGAGGTGCACACGAT
TGATATAGAGAGTGTGGGTGATGTGTAGCGTTTTTGTTCCTGAGCGTCCT
TTTCGTGGTTCGCACGCGCTGATAGCAATGCGCGCGCCGATGTTTTTTAA
AGTGCGATCCTCGTACGCACGGTAGCAGAAAGTGGTTCTTGCACGCGCAG
GTATATCGGCACAACAAAAAGTATTCTCGAAGTAGCAGACATTGAAGTGA
AACTCTCCACTTTCCTCGCGAAGCGTCAACCTCCCCCCCCCTCCCCATTT
TCTGCAGACCATCGGCATCTCCCCCACCACACTCAAGAAACTCTGCCGGC
ACTACGGAATACCCCGCTGGCCCTTCCGCCAGATTGCGGGTACCGGTCGA
ACCACGAGCCGTCCCAACGAAATGCTCGCCACGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20859:1128..2413+

>mRNA_L-elsbetiae_contig20859.6306.1 ID=mRNA_L-elsbetiae_contig20859.6306.1|Name=mRNA_L-elsbetiae_contig20859.6306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig20859:1128..2413+ (Laminarionema elsbetiae ELsaHSoW15)
ACACAAACCGGCAGTGTGAGGCCGCACACAAGATCCTTCGAGACCCAGCA
TCTCTCCTACAGTAGTAACGGCAGTGGCAGCTTGTTCGAACCAGGAGCAG
CAGCAGCCTTCCAACATGAAAGGGCGCCGTTATTCCTCTGCTGCAAGCCA
GAAAATAAAGCTGGGTCGTCGAGAGACCTTCCCGGACATTGTGCACAGGA
TGCCGGAGCACGAACTTCGCCTGCTCATGACGATGACACAACTCCAAGCA
GCAAAGACACAAACCGGCAGTGTGAGGCCGCACACAAGATCCTTCGAGAC
CCAGCATCTCTCCTACAGTAGTAACGGCAGTGGCAGCTTGTTCGAACCAG
GAGCAGCAGCAGCCTTCCAACATGAAAGGGCGCCGTTATTCCTCTGCTGC
AAGCCAGAAAATAAAGCTGGGTCGTCGAGAGACCTTCCCGGACATTGTGC
ACAGGATGCCGGAGCACGAACTTCGCCTGCTCATGACGATGACACAACTC
CAAGCAGCAAAGACCATCGGCATCTCCCCCACCACACTCAAGAAACTCTG
CCGGCACTACGGAATACCCCGCTGGCCCTTCCGCCAGATTGCGGGTACCG
GTCGAACCACGAGCCGTCCCAACGAAATGCTCGCCACGCCACCATCGGCA
TCTCCCCCACCACACTCAAGAAACTCTGCCGGCACTACGGAATACCCCGC
TGGCCCTTCCGCCAGATTGCGGGTACCGGTCGAACCACGAGCCGTCCCAA
CGAAATGCTCGCCACGCC
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