mRNA_L-elsbetiae_contig2081.6296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2081.6296.1
Unique NamemRNA_L-elsbetiae_contig2081.6296.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.040e-17
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:  214 LRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLRDNMAVCQAAGSATLS 366
            LRGLGLLRM LKDYSGAL AFELTAKINPMLLPGLRDNMAVCQAA +A LS
Sbjct: 2017 LRGLGLLRMNLKDYSGALGAFELTAKINPMLLPGLRDNMAVCQAAANAMLS 2067
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A836C9C9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.860e-10
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  130 LSAALFWP---AGCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGL-RDNMAVCQA 345
            LS ALF     A   A   +VLE+EPRHFGAL GL +LRMR  DY+GAL   E    INP +   L R N+AVC A
Sbjct:   98 LSTALFLAGRLADSEAEAARVLELEPRHFGALNGLAILRMRRHDYAGALPLLEKVVSINPRMSAELTRQNIAVCHA 173
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A355Q467_9DELT (Uncharacterized protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A355Q467_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-8
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  157 GCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINP------MLLPGLRDNMA 333
            G IA  ++ L +EPRHFGAL GLG+++MRL+DYS AL+ +E   KI+P       +LP LR  ++
Sbjct:  114 GSIADIKETLVLEPRHFGALSGLGMIQMRLQDYSEALSTYESLQKIHPNSQDVGRILPALRQQIS 178
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A2D6YHS6_9DELT (Uncharacterized protein n=4 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2D6YHS6_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 1.000e-7
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  157 GCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINP------MLLPGLRDNMA 333
            G IA  ++ L +EPRHFGAL GLG+++M L+DYS AL  +E   KI+P       +LP LR  ++
Sbjct:  114 GSIADIKETLTLEPRHFGALSGLGMIQMHLQDYSQALLTYESLQKIHPNSQDVGRILPALRQQIS 178
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A2D7Z406_9PROT (Uncharacterized protein n=1 Tax=Nisaea sp. TaxID=2024842 RepID=A0A2D7Z406_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 2.960e-7
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:  157 GCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLR 321
            G +A  RQVL +EPRHFGAL GLGL+ M L+   GAL AFE   +INP +    R
Sbjct:  105 GSVADIRQVLNLEPRHFGALSGLGLIYMALERPQGALKAFERALQINPHMTSARR 159
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A447D021_9HYPH (Uncharacterized protein n=3 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A447D021_9HYPH)

HSP 1 Score: 58.9 bits (141), Expect = 1.580e-6
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  154 AGCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLRDNMAV 336
            AG +A  RQVL  EPRHFGAL GLG +   + D + ALAAF     INP L  G+ D + +
Sbjct:  155 AGALADLRQVLRREPRHFGALAGLGTIMQEIGDETNALAAFRKALDINPRL-KGMADKVRI 214
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: UPI00082BD879 (tetratricopeptide repeat protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI00082BD879)

HSP 1 Score: 58.2 bits (139), Expect = 2.040e-6
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  154 AGCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLRDNMAV 336
            AG  A  R+ L +EPRHFGAL GLGL+ M+L+ Y  A+ +F+   +INP L  G R N+ +
Sbjct:  128 AGAAADIRRTLALEPRHFGALAGLGLVYMQLERYRAAIESFQRALEINPWL-EGTRRNVDI 187
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A520PFE8_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A520PFE8_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 4.090e-6
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  178 QVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLRD 324
            + L++EPRHFGAL GLGL+RM L+D+ GA++A E   +++P +   +R+
Sbjct:  103 RTLKLEPRHFGALSGLGLIRMELRDWPGAISALEAALRLHPHMTGVIRN 151
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BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A8G2BIV4_9PROT (TPR repeat-containing protein n=2 Tax=Thalassobaculum TaxID=526215 RepID=A0A8G2BIV4_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-6
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  148 WPAGCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPML 306
            +PA  IA  RQ L +EPRHFGAL GLGL+ ++L   + ALAAFE   +I+P L
Sbjct:  120 YPAS-IADVRQTLALEPRHFGALSGLGLINLKLDRKADALAAFEAALEIHPFL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Match: A0A523PFD4_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PFD4_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 5.530e-6
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  157 GCIASGRQVLEMEPRHFGALRGLGLLRMRLKDYSGALAAFELTAKINPMLLPGLRDNM 330
            G +A  ++ L +EPRHFGA  GLGL+  RL + + AL AFE   ++NP L PG R N+
Sbjct:  114 GSVADIKRTLALEPRHFGAWSGLGLIYTRLDNDAAALRAFEQALEVNPHL-PGARHNV 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2081.6296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWR6_ECTSI4.040e-1790.20Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
A0A836C9C9_9STRA1.860e-1052.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A355Q467_9DELT1.550e-847.69Uncharacterized protein n=3 Tax=Proteobacteria Tax... [more]
A0A2D6YHS6_9DELT1.000e-746.15Uncharacterized protein n=4 Tax=Deltaproteobacteri... [more]
A0A2D7Z406_9PROT2.960e-754.55Uncharacterized protein n=1 Tax=Nisaea sp. TaxID=2... [more]
A0A447D021_9HYPH1.580e-649.18Uncharacterized protein n=3 Tax=Rhodoplanes piscin... [more]
UPI00082BD8792.040e-647.54tetratricopeptide repeat protein n=1 Tax=Halofilum... [more]
A0A520PFE8_9PROT4.090e-646.94Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]
A0A8G2BIV4_9PROT4.530e-654.72TPR repeat-containing protein n=2 Tax=Thalassobacu... [more]
A0A523PFD4_9PROT5.530e-648.28Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2081contigL-elsbetiae_contig2081:19867..21333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size989
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2081.6296.1prot_L-elsbetiae_contig2081.6296.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2081 20290..21328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.1712139-UTR-L-elsbetiae_contig2081:19866..202891622815855.1712139-UTR-L-elsbetiae_contig2081:19866..20289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19867..20289 -
1691683148.286631-UTR-L-elsbetiae_contig2081:19866..202891691683148.286631-UTR-L-elsbetiae_contig2081:19866..20289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19867..20289 -
1622815855.2129807-UTR-L-elsbetiae_contig2081:21328..213331622815855.2129807-UTR-L-elsbetiae_contig2081:21328..21333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 21329..21333 -
1691683148.3219624-UTR-L-elsbetiae_contig2081:21328..213331691683148.3219624-UTR-L-elsbetiae_contig2081:21328..21333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 21329..21333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.186272-CDS-L-elsbetiae_contig2081:20289..206061622815855.186272-CDS-L-elsbetiae_contig2081:20289..20606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 20290..20606 -
1691683148.2965205-CDS-L-elsbetiae_contig2081:20289..206061691683148.2965205-CDS-L-elsbetiae_contig2081:20289..20606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 20290..20606 -
1622815855.1988974-CDS-L-elsbetiae_contig2081:21084..213281622815855.1988974-CDS-L-elsbetiae_contig2081:21084..21328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 21085..21328 -
1691683148.3066168-CDS-L-elsbetiae_contig2081:21084..213281691683148.3066168-CDS-L-elsbetiae_contig2081:21084..21328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 21085..21328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2081.6296.1

>prot_L-elsbetiae_contig2081.6296.1 ID=prot_L-elsbetiae_contig2081.6296.1|Name=mRNA_L-elsbetiae_contig2081.6296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MHVLPVIKSPERETPTVPSQPAHPQDKWISLQLKGMLEILNLVCCPFLAG
RMYRFRASGPRDGAQALWRPKGSRIAAHEAQGLFGSFGGFRAHGEDQPDA
FAGPARQHGGVPGGGKRDAFMTSSVCLQFVHRSIWHSGGEAGNAISVSIV
KHRRCLVRWGGRGFVVTPRLRCFVSVCCKRFASCVV*
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mRNA from alignment at L-elsbetiae_contig2081:19867..21333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2081.6296.1 ID=mRNA_L-elsbetiae_contig2081.6296.1|Name=mRNA_L-elsbetiae_contig2081.6296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1467bp|location=Sequence derived from alignment at L-elsbetiae_contig2081:19867..21333- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGATGCATGTTTTGCCTGTGATCAAATCACCTGAGCGCGAAACTCCC
ACGGTACCCAGCCAGCCCGCACATCCCCAAGATAAATGGATATCCCTTCA
ATTGAAGGGAATGTTGGAAATCTTAAATCTTGTCTGCTGCCCTTTTTTGG
CCGGCCGGATGTATCGCTTCCGGGCGTCAGGTCCTCGAGATGGAGCCCAG
GCACTTTGGCGCCCTAAGGGGTCTCGGATTGCTGCGCATGAGGCTCAAGG
TAAGGGAAGAGAGGGAGGAAGGGACAGCGAGCGACTTCATCGAGGCGCGG
GCGCGTATCTTTTTCATAGATTGCCCTGGGCCCAGGGCGCTTCCAATTTT
GCCTCCATGGCGTCGCGGGCGTATCATCTTTGCATTCATACTTTCATCCC
GAGCCCTTTGACCGGCGCGGTTTAAGCGGCTGCCCTGTCGAGCCAGCCAC
TGTCACGACTCCCGCGTTTAAACTAGATCGATGCGAGGGAGAACCTTAAA
ACTCCGTTGCCGCTCCCCTTCGAGCTCGTTGACGGCCGGGTCCCGTGAAA
GGTAGAACGGCGAGGATGAGGAAAACTGTGGAGCAAGCCCGAAGAAATGG
CATTGTTTAATTTTCGTTGTTGGCAAGCAAGTACAATTGTACAACCCCCC
CCCTCGCGAATCCGCGTATAATCTGCACCGACTGCCTTCGCCGATCTGCT
GGAAATGAAACCGCTCTGCTTGAGCAGGACTATTCGGGAGCTTTGGCGGC
TTTCGAGCTCACGGCGAAGATCAACCCGATGCTTTTGCCGGGCCTGCGCG
ACAACATGGCGGTGTGCCAGGCGGCGGGAAGCGCGACGCTTTCATGACGT
CTTCTGTTTGTTTGCAGTTTGTGCACAGAAGCATATGGCATTCAGGCGGC
GAAGCAGGCAATGCTATTTCCGTTAGTATTGTAAAGCACCGGAGATGTCT
TGTGCGGTGGGGAGGCCGAGGTTTTGTTGTCACACCCCGTCTGCGCTGTT
TTGTTTCGGTGTGTTGTAAACGTTTCGCGAGCTGTGTTGTGTGAGAGGTG
TTGGGTTTTCCTTCCTGGTTGGCTTGCGGTGCGGGTGTATATGGGCGGCT
TGGTTTCCTGGGCTAGATATTCCCTGCCACAAAAGCGGCGGTAGTTTACG
GCGGGCTTTTTCTGTTTCCGCCCCCGAGGCGTCATTTGGCAACAACGGAG
TTGGGCATGCCACACTCACTCGCGTTTGTGGGCTGAGCGCCCAGGGCTGC
ATCTCTCTTTTGCTTTCTGATTTAGTTGCGGCGACCATGAATGTTATGTG
ACTGGCATGCGCGCGCGCAAGGTGGCGTTGGTCGGGGTCGAGAACCTTCG
CTCCGCCGCATGGGAAATATCGTACCACGCGGTGTTGGAATGATGGGGCG
CTCATAAGGCAGCGCACCCCTTCGCTGTCTGTGGATGTGGGACAACATAA
TAAAAAGGCATCACGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2081:19867..21333-

>mRNA_L-elsbetiae_contig2081.6296.1 ID=mRNA_L-elsbetiae_contig2081.6296.1|Name=mRNA_L-elsbetiae_contig2081.6296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig2081:19867..21333- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTTTTGCCTGTGATCAAATCACCTGAGCGCGAAACTCCCACGGT
ACCCAGCCAGCCCGCACATCCCCAAGATAAATGGATATCCCTTCAATTGA
AGGGAATGTTGGAAATCTTAAATCTTGTCTGCTGCCCTTTTTTGGCCGGC
CGGATGTATCGCTTCCGGGCGTCAGGTCCTCGAGATGGAGCCCAGGCACT
TTGGCGCCCTAAGGGGTCTCGGATTGCTGCGCATGAGGCTCAAGATGCAT
GTTTTGCCTGTGATCAAATCACCTGAGCGCGAAACTCCCACGGTACCCAG
CCAGCCCGCACATCCCCAAGATAAATGGATATCCCTTCAATTGAAGGGAA
TGTTGGAAATCTTAAATCTTGTCTGCTGCCCTTTTTTGGCCGGCCGGATG
TATCGCTTCCGGGCGTCAGGTCCTCGAGATGGAGCCCAGGCACTTTGGCG
CCCTAAGGGGTCTCGGATTGCTGCGCATGAGGCTCAAGGACTATTCGGGA
GCTTTGGCGGCTTTCGAGCTCACGGCGAAGATCAACCCGATGCTTTTGCC
GGGCCTGCGCGACAACATGGCGGTGTGCCAGGCGGCGGGAAGCGCGACGC
TTTCATGACGTCTTCTGTTTGTTTGCAGTTTGTGCACAGAAGCATATGGC
ATTCAGGCGGCGAAGCAGGCAATGCTATTTCCGTTAGTATTGTAAAGCAC
CGGAGATGTCTTGTGCGGTGGGGAGGCCGAGGTTTTGTTGTCACACCCCG
TCTGCGCTGTTTTGTTTCGGTGTGTTGTAAACGTTTCGCGAGCTGTGTTG
TGTGAGACTATTCGGGAGCTTTGGCGGCTTTCGAGCTCACGGCGAAGATC
AACCCGATGCTTTTGCCGGGCCTGCGCGACAACATGGCGGTGTGCCAGGC
GGCGGGAAGCGCGACGCTTTCATGACGTCTTCTGTTTGTTTGCAGTTTGT
GCACAGAAGCATATGGCATTCAGGCGGCGAAGCAGGCAATGCTATTTCCG
TTAGTATTGTAAAGCACCGGAGATGTCTTGTGCGGTGGGGAGGCCGAGGT
TTTGTTGTCACACCCCGTCTGCGCTGTTTTGTTTCGGTGTGTTGTAAACG
TTTCGCGAGCTGTGTTGTGTGA
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