mRNA_L-elsbetiae_contig2081.6295.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2081.6295.1
Unique NamemRNA_L-elsbetiae_contig2081.6295.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2081.6295.1 vs. uniprot
Match: A0A7S2W819_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W819_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.830e-21
Identity = 93/268 (34.70%), Postives = 135/268 (50.37%), Query Frame = 1 
Query:   79 GCESLDLSKTTMWKCLHDDPGTSKLLKQIYGGSRPEISYPKLRTAV----------PRSNLPPEFKDSRRSLSSSNAQKKTDKQVRVPKFRGARPKGPAPIDSVVMRRKRVGQIHEEQAAVRERVEHYRPPFIKPVGESEKSR*LAEKFEFGGGKALPEEMTG-PVMPIPSEARWEATEKRRIAKVMRRRRGLPEEEESSASGDGRGGAVPASS---MFDQVANEIEERQQFLLEARESGVPC-DSKTEARVMGEISLRMGELKRLTP 837
            G    D  +   WK         +LL+QIYG   P ++ P  R +           P SN   +  D RRS  S +     +K V++P+ R    +  + ID +V RRKR   I +E    + R+EHYRPP ++P+G+ EK R LAE   F GGK LP EMT  P+   PSE      E+ RI K  RRR GLPE   +  S        P S    + + + +EI+ER++ L + +  G+   D+KT A   GEI++R+ EL+++ P
Sbjct:   11 GTTMADQKENHAWKAFDTSSEAGRLLRQIYGSKPPPVNVPLPRRSRNPGPPTEGWRPVSNRVGQV-DPRRSTRSIDK----EKAVQIPR-RARADRSYSKID-LVSRRKRGDVIRDELQDAKMRMEHYRPPHLRPMGQ-EKDR-LAEICAFKGGKILPAEMTAIPLEVTPSEQVARIKERERIEKARRRRAGLPEPTLTRPS-------APKSHTQMLEETILDEIDERRKHLEDMQGLGMRAEDAKTLA---GEIAVRVRELRKVNP 259
[Close]
BLAST of mRNA_L-elsbetiae_contig2081.6295.1 vs. uniprot
Match: A0A7S4MSU8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSU8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.660e-20
Identity = 91/263 (34.60%), Postives = 125/263 (47.53%), Query Frame = 1 
Query:  115 WKCLHDDPGTSKLLKQIYG---GSRPEISYPKLRTAVPRSNLPPEFKDSRRS---LSSSNAQKKTDKQVRVPKFRGARPKGP-APIDSVVMRRKRVGQIHEEQAAVRERVEH-YRPPFIKPVGESEKSR*LAEKFEFGGGKALPEEMTGPVMPIPSEARWEATEKRRIAKVM-----RRRRGLPEEEE-----SSASGDGRGGAVPASS----MFDQVANEIEERQ--QFLLEARESGVPCDSKTEARVMGEISLRMGELKRL 831
            W+    D    +LL ++YG   G +P+I+YPKL+T    S     +K   +       +   ++    V VPK   A  +G  A   + + RRK     HE+ A + E V H +RPP         +   L E F +GGG ALPEE+T P  P+PSE +    E RR+ K       RR RG  E+E+     SS S      A+        MFDQV  EIEER+  QF +E   SG    + T A++  EIS RM EL +L
Sbjct:   21 WRVFQHDTEAGRLLSRLYGVQPGGKPQINYPKLKTRKSCSTERAHWKSPGQGEVDRKRAGFDRRRAASVSVPKVGSAVRRGETASAVTFIPRRKNEVACHEDLACI-ESVRHTFRPPNRSEYSTDREKDRLNELFTYGGGVALPEELTLPEAPLPSEEKHRRVEARRVEKAKCRRQARRNRGSKEDEDDLSDDSSLSNSRESEAMSDKGHNDRMFDQVLGEIEERRMFQFSMEEASSG----ALTRAQIADEISSRMKELVKL 278
[Close]
BLAST of mRNA_L-elsbetiae_contig2081.6295.1 vs. uniprot
Match: A0A7S4A5Q9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5Q9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.720e-19
Identity = 85/254 (33.46%), Postives = 129/254 (50.79%), Query Frame = 1 
Query:   97 LSKTTMWKCLHDDPGTSKLLKQIYGGS--RPEISYPKLRTAVPRSNLPPEFKDSRRSLSSSNAQKKTDKQVRVPKFRGARPKGPAP----IDSVVMRRKRVGQIHEEQAAVRERVEHYRPPFIKPVG-ESEKSR*LAEKFEFGGGKALPEEMTGPVMPIPSEARWEATEKRRIAKVMRRRRGLPEEEESSASGDGRGGAVPAS---SMFDQVANEIEERQQFLLEARESGVPCDSKTEARVMGEISLRMGELKR 828
            +++   W+         ++LK++YG S   P I+YPKL T  PR  +P +F      L +++A+  + ++ +       R K   P    ID V  R++    I E    +  R   YRPP +     ++EK+R L E  +FGGGKALP+EMT     +PSE R +A E+ R+ +  R+RRGL EE  ++A         P S      +Q++ EIE+R  FL EA+  G+  +     RV  EIS R  EL+R
Sbjct:    1 MAQNKAWQAFDTSTEAGRMLKKLYGSSAGHPNIAYPKL-TTKPRKQMP-KFIPGGAKLDATDARSNSHRREKASTVEPWRKKYARPTYKPIDFVA-RKRNTAAIDEILEDMSMRNAAYRPPRVNGSSTDAEKAR-LQEIAQFGGGKALPDEMTLGKTTLPSERRAQALEEARVEREWRKRRGLTEEPAAAAP-------EPKSLETQQIEQISREIEDRAAFLEEAKAMGLKGEPIK--RVEFEISTRKHELER 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2081.6295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2W819_9STRA5.830e-2134.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4MSU8_9STRA1.660e-2034.60Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4A5Q9_9STRA1.720e-1933.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2081contigL-elsbetiae_contig2081:17701..19740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004300.1
Exons5
Model size843
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2081.6295.1prot_L-elsbetiae_contig2081.6295.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2081 17737..19062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.5156312-UTR-L-elsbetiae_contig2081:17700..177361622815855.5156312-UTR-L-elsbetiae_contig2081:17700..17736Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 17701..17736 +
1691683148.50798-UTR-L-elsbetiae_contig2081:17700..177361691683148.50798-UTR-L-elsbetiae_contig2081:17700..17736Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 17701..17736 +
1622815855.5697265-UTR-L-elsbetiae_contig2081:19062..192811622815855.5697265-UTR-L-elsbetiae_contig2081:19062..19281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19063..19281 +
1691683148.5617409-UTR-L-elsbetiae_contig2081:19062..192811691683148.5617409-UTR-L-elsbetiae_contig2081:19062..19281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19063..19281 +
1622815855.5820227-UTR-L-elsbetiae_contig2081:19596..197401622815855.5820227-UTR-L-elsbetiae_contig2081:19596..19740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19597..19740 +
1691683148.5720906-UTR-L-elsbetiae_contig2081:19596..197401691683148.5720906-UTR-L-elsbetiae_contig2081:19596..19740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2081 19597..19740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815855.5260196-CDS-L-elsbetiae_contig2081:17736..179011622815855.5260196-CDS-L-elsbetiae_contig2081:17736..17901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 17737..17901 +
1691683148.5227735-CDS-L-elsbetiae_contig2081:17736..179011691683148.5227735-CDS-L-elsbetiae_contig2081:17736..17901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 17737..17901 +
1622815855.536934-CDS-L-elsbetiae_contig2081:18246..183651622815855.536934-CDS-L-elsbetiae_contig2081:18246..18365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 18247..18365 +
1691683148.531693-CDS-L-elsbetiae_contig2081:18246..183651691683148.531693-CDS-L-elsbetiae_contig2081:18246..18365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 18247..18365 +
1622815855.5480127-CDS-L-elsbetiae_contig2081:18647..188061622815855.5480127-CDS-L-elsbetiae_contig2081:18647..18806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 18648..18806 +
1691683148.5413826-CDS-L-elsbetiae_contig2081:18647..188061691683148.5413826-CDS-L-elsbetiae_contig2081:18647..18806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 18648..18806 +
1622815855.5587957-CDS-L-elsbetiae_contig2081:19061..190621622815855.5587957-CDS-L-elsbetiae_contig2081:19061..19062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 19062..19062 +
1691683148.5515106-CDS-L-elsbetiae_contig2081:19061..190621691683148.5515106-CDS-L-elsbetiae_contig2081:19061..19062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2081 19062..19062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2081.6295.1

>prot_L-elsbetiae_contig2081.6295.1 ID=prot_L-elsbetiae_contig2081.6295.1|Name=mRNA_L-elsbetiae_contig2081.6295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MVLRHRALKLSLFFGCESLDLSKTTMWKCLHDDPGTSKLLKQIYGGSRPE
ISYPKLRTAVPRSNLPPEFKDSRRSLSSSNAQKKTDKQVRVPKFRGARPK
GPAPIDSVVMRRKRVGQIHEEQAAVRERVEHYRPPFIKPVGESEKSR*
back to top

mRNA from alignment at L-elsbetiae_contig2081:17701..19740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2081.6295.1 ID=mRNA_L-elsbetiae_contig2081.6295.1|Name=mRNA_L-elsbetiae_contig2081.6295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig2081:17701..19740+ (Laminarionema elsbetiae ELsaHSoW15)
TAACAGGTGCCTATCGGACATGTCGTTTGCTCCGTAATGGTATTGCGCCA
CCGTGCACTCAAGCTGTCTCTCTTCTTTGGGTGTGAGAGCCTCGATCTAT
CCAAAACCACCATGTGGAAGTGTCTCCACGACGATCCCGGGACGTCCAAG
CTCCTGAAACAGATCTACGGCGGGAGTCGACCAGAGATATCTTATCCGAA
GGTGCGAGCGTACCTTGATTGGTGGGGAGCTTGGTTGTTCGTGGCCGTAT
TGCCCCCATAACGGACGGGTGGCGAAGAGCAAACGGCATCCACGCACACC
ACGTGGAGTATATACCGGCACCATCATCGTGTTGAAAAGCACTTCGTCCT
CCACTATCATTATGTACATCTGAATGTCTATCTACATTAGTCTATAGATC
TACAGATAAAGATAATGCACATTTACAAACCCTCCACTGCCCTGCTCGCG
TGTCTCGCGTATGTCAACAACGATGGGTGCATACTACTGTGCATGTATGC
AAACACTCGTCTCCGAACCCCTTATCTATGCTGCTTGCTTGCTCAGTTGA
GAACGGCGGTCCCTCGGTCCAACCTCCCGCCAGAGTTTAAAGACTCCCGG
AGAAGTTTAAGCAGCAGCAACGCACAGAAAAAAACCGACAAACAAGTCCG
GGTTCCAAAGTTCAGGTGCGTATGTATGCAGATGCGTTACAGGTTTTCTT
GAGAGGGAAACTGCATAGATACTGGTAGAGTGCAGGGTAGGAGATTGGGG
CATGGACGTGAACGCGGCCAGGAGGGAGGGCGAGTGTACAGTCCATAGAC
TCCTTTGCGTCTGGAATAGGCCGTAGGGCGTCTCGTGCAAGCTAATGGCC
AGCGACCAAAACAAGCCTGTCGTTGCTGCTTCCGCCAGCCTTAGTACAAA
CCGCCACCACACCGCTGATGCTGTCGTGTCCCTTAAACGCTTTGTAGAGG
GGCGAGGCCGAAAGGTCCCGCGCCAATCGACTCCGTCGTCATGCGGCGCA
AGCGGGTGGGTCAAATCCACGAAGAGCAAGCAGCCGTCCGCGAGCGTGTC
GAGCACTACCGTCCGCCGTTCATCAAGCCGGTCGGCGAGAGCGAGAAATC
CAGGTAGTCATAATACCGTTGTCGTAGAGCAGTATCGACGATCGTATACC
ACCCTCACTCCTCAAAGTCCTTGGTTTGAGGTTTTACACAATCTCTGCCA
GTTTTTAACCTTTGCTGTCGGCAGAGTTGACATGAATTGAGTTTCTAATT
CGAGTGTTCAGTTCAACTACATTGGCGCGAAATAAGGCAAGAAAGACGAA
AGCAGGCTTACAGCAGCATCAGTCCCTGAACGCTTCCACAAAACAACCTC
CCACAAGCAAGGTTGGCGGAGAAGTTTGAGTTCGGGGGCGGCAAGGCTCT
CCCCGAGGAGATGACTGGACCTGTGATGCCGATCCCATCCGAGGCGAGGT
GGGAAGCAACGGAGAAACGGCGCATCGCCAAGGTTATGCGGCGGAGAAGA
GGGCTGCCCGAGGAAGAAGAAAGTTCCGCCAGCGGGGATGGTCGCGGTGG
CGCTGTGCCTGCGAGTTCCATGTTTGACCAGGTAATAACTGCAGTTTGGA
TCGTACGAATTCCTTCGTGAGTACAGCCGAGCAGCCAGTGCAGGGACTAT
TGTCAGATAATTCGCAATTTTCACTGAAACGTAAATAGACACTATCGCGG
GACTCCAAAAAGCTAAGGCAGCGTTGTTGGACCTTTCGTCTAGAGCGAGT
AGATATACATACATACGAAAGAGCGGCATATTTGATTGTTGCCGGCTGTA
AAGCCGGCCGTGTCAGTATGTGTTGCTCATCCTCCCGCCCGTTACTGTTG
TTCCTTCACGTGCTCTGCGGGATGCTGTTCCAACATGTTTGTGTAGGTCG
CGAACGAGATCGAGGAGAGGCAGCAATTTTTACTCGAGGCTAGGGAGTCG
GGGGTCCCGTGCGACAGCAAAACCGAGGCGCGTGTAATGGGAGAGATCTC
GCTGAGGATGGGCGAGCTGAAGCGGTTGACACCGCCGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2081:17701..19740+

>mRNA_L-elsbetiae_contig2081.6295.1 ID=mRNA_L-elsbetiae_contig2081.6295.1|Name=mRNA_L-elsbetiae_contig2081.6295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig2081:17701..19740+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATTGCGCCACCGTGCACTCAAGCTGTCTCTCTTCTTTGGGTGTGA
GAGCCTCGATCTATCCAAAACCACCATGTGGAAGTGTCTCCACGACGATC
CCGGGACGTCCAAGCTCCTGAAACAGATCTACGGCGGGAGTCGACCAGAG
ATATCTTATCCGAAGATGGTATTGCGCCACCGTGCACTCAAGCTGTCTCT
CTTCTTTGGGTGTGAGAGCCTCGATCTATCCAAAACCACCATGTGGAAGT
GTCTCCACGACGATCCCGGGACGTCCAAGCTCCTGAAACAGATCTACGGC
GGGAGTCGACCAGAGATATCTTATCCGAAGTTGAGAACGGCGGTCCCTCG
GTCCAACCTCCCGCCAGAGTTTAAAGACTCCCGGAGAAGTTTAAGCAGCA
GCAACGCACAGAAAAAAACCGACAAACAAGTCCGGGTTCCAAAGTTCAGT
TGAGAACGGCGGTCCCTCGGTCCAACCTCCCGCCAGAGTTTAAAGACTCC
CGGAGAAGTTTAAGCAGCAGCAACGCACAGAAAAAAACCGACAAACAAGT
CCGGGTTCCAAAGTTCAGAGGGGCGAGGCCGAAAGGTCCCGCGCCAATCG
ACTCCGTCGTCATGCGGCGCAAGCGGGTGGGTCAAATCCACGAAGAGCAA
GCAGCCGTCCGCGAGCGTGTCGAGCACTACCGTCCGCCGTTCATCAAGCC
GGTCGGCGAGAGCGAGAAATCCAGGTAAGGGGCGAGGCCGAAAGGTCCCG
CGCCAATCGACTCCGTCGTCATGCGGCGCAAGCGGGTGGGTCAAATCCAC
GAAGAGCAAGCAGCCGTCCGCGAGCGTGTCGAGCACTACCGTCCGCCGTT
CATCAAGCCGGTCGGCGAGAGCGAGAAATCCAGGTAGG
back to top