mRNA_L-elsbetiae_contig2080.6289.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2080.6289.1
Unique NamemRNA_L-elsbetiae_contig2080.6289.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2080.6289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2080contigL-elsbetiae_contig2080:10007..10638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.9302552-UTR-L-elsbetiae_contig2080:10006..102991622815854.9302552-UTR-L-elsbetiae_contig2080:10006..10299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 10007..10299 +
1691683148.1492183-UTR-L-elsbetiae_contig2080:10006..102991691683148.1492183-UTR-L-elsbetiae_contig2080:10006..10299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 10007..10299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.9421659-CDS-L-elsbetiae_contig2080:10299..106381622815854.9421659-CDS-L-elsbetiae_contig2080:10299..10638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 10300..10638 +
1691683148.1620455-CDS-L-elsbetiae_contig2080:10299..106381691683148.1620455-CDS-L-elsbetiae_contig2080:10299..10638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 10300..10638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2080.6289.1prot_L-elsbetiae_contig2080.6289.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2080 10300..10638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2080.6289.1

>prot_L-elsbetiae_contig2080.6289.1 ID=prot_L-elsbetiae_contig2080.6289.1|Name=mRNA_L-elsbetiae_contig2080.6289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MRHSVHTRRACGGRQLGLLKFGDARARGCIQKCLRKATTNAHLNSRASPP
KRLSSLQSYNFEMLMMINPYLAEYVRVVGTPYMCVCVLPIYFGDSPPKWR
HVLHLAVYIDGQ*
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mRNA from alignment at L-elsbetiae_contig2080:10007..10638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2080.6289.1 ID=mRNA_L-elsbetiae_contig2080.6289.1|Name=mRNA_L-elsbetiae_contig2080.6289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=632bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:10007..10638+ (Laminarionema elsbetiae ELsaHSoW15)
GACCACCAAGGCCAACTGCAGCTGCGGTGAGCTCACGTTTTACGCTGGGG
TCGTCCTTCTCTTGTCGGAGTATGGTGCCTCGATTCCCTGCAGTACCATG
TTGCTCAACAACAGGTGCAGGTGGTTCTCGCTGAGAAAGGGATAGACTTA
TATAGCAAGGGACGTAAATATTTTTATGTATGTACGATGCGTGGAAGATC
AATCTAGTCTACATAGTGAGAGTGGCTTGAGAAAACAGTGAGAATGAAAT
GAAGGGAATGCTCGGAGGGTACATCCGTGTTATGTAGACGCACATGAGAC
ATAGCGTGCACACGCGTCGCGCTTGTGGCGGTAGGCAATTAGGGTTGTTG
AAGTTTGGAGATGCTCGTGCGCGTGGATGTATTCAAAAATGCCTCCGCAA
AGCGACAACGAACGCTCATTTGAATAGCAGAGCGTCTCCTCCCAAGCGAT
TATCATCGCTTCAATCGTATAATTTCGAAATGCTCATGATGATTAATCCG
TACCTGGCCGAGTATGTACGTGTTGTAGGCACTCCCTACATGTGTGTGTG
TGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACATGTAC
TACACCTTGCGGTTTACATTGATGGTCAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2080:10007..10638+

>mRNA_L-elsbetiae_contig2080.6289.1 ID=mRNA_L-elsbetiae_contig2080.6289.1|Name=mRNA_L-elsbetiae_contig2080.6289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:10007..10638+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACATAGCGTGCACACGCGTCGCGCTTGTGGCGGTAGGCAATTAGG
GTTGTTGAAGTTTGGAGATGCTCGTGCGCGTGGATGTATTCAAAAATGCC
TCCGCAAAGCGACAACGAACGCTCATTTGAATAGCAGAGCGTCTCCTCCC
AAGCGATTATCATCGCTTCAATCGTATAATTTCGAAATGCTCATGATGAT
TAATCCGTACCTGGCCGAGTATGTACGTGTTGTAGGCACTCCCTACATGT
GTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGA
CATGTACTACACCTTGCGGTTTACATTGATGGTCAGTAAATGAGACATAG
CGTGCACACGCGTCGCGCTTGTGGCGGTAGGCAATTAGGGTTGTTGAAGT
TTGGAGATGCTCGTGCGCGTGGATGTATTCAAAAATGCCTCCGCAAAGCG
ACAACGAACGCTCATTTGAATAGCAGAGCGTCTCCTCCCAAGCGATTATC
ATCGCTTCAATCGTATAATTTCGAAATGCTCATGATGATTAATCCGTACC
TGGCCGAGTATGTACGTGTTGTAGGCACTCCCTACATGTGTGTGTGTGTC
CTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACATGTACTACA
CCTTGCGGTTTACATTGATGGTCAGTAA
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