mRNA_L-elsbetiae_contig208.6287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig208.6287.1
Unique NamemRNA_L-elsbetiae_contig208.6287.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6287.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.520e-5
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:    3 SEDCELTEGMWANTERQKIEEFSTKVSMTAAAA 101
            SEDCELTE +WA+TERQK++EFS K+ +TA AA
Sbjct:  840 SEDCELTEALWASTERQKLKEFSEKLVLTATAA 872
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS39_ECTSI8.520e-569.70AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:43126..43526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.3043985-UTR-L-elsbetiae_contig208:43125..431541622815854.3043985-UTR-L-elsbetiae_contig208:43125..43154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 43126..43154 +
1691683147.6876988-UTR-L-elsbetiae_contig208:43125..431541691683147.6876988-UTR-L-elsbetiae_contig208:43125..43154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 43126..43154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.314955-CDS-L-elsbetiae_contig208:43154..435261622815854.314955-CDS-L-elsbetiae_contig208:43154..43526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 43155..43526 +
1691683147.7024665-CDS-L-elsbetiae_contig208:43154..435261691683147.7024665-CDS-L-elsbetiae_contig208:43154..43526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 43155..43526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6287.1prot_L-elsbetiae_contig208.6287.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig208 43155..43526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig208.6287.1

>prot_L-elsbetiae_contig208.6287.1 ID=prot_L-elsbetiae_contig208.6287.1|Name=mRNA_L-elsbetiae_contig208.6287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MWANTERQKIEEFSTKVSMTAAAAATAAAAAPAIGNAAIDVGSRVKSINE
PLRPSAFSPAKMPADVGIQSEAGSRSTGQRGFSPPPSCADAAAATNAGTK
NAAPFHSNGFGCDGGAGAGFPTPV
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mRNA from alignment at L-elsbetiae_contig208:43126..43526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig208.6287.1 ID=mRNA_L-elsbetiae_contig208.6287.1|Name=mRNA_L-elsbetiae_contig208.6287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=401bp|location=Sequence derived from alignment at L-elsbetiae_contig208:43126..43526+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCGGAAGACTGCGAGCTAACGGAGGGGATGTGGGCCAACACGGAGCGC
CAGAAAATCGAAGAGTTCTCGACGAAGGTATCAATGACGGCGGCGGCGGC
GGCCACCGCCGCTGCTGCAGCACCCGCCATCGGAAATGCAGCCATTGACG
TCGGATCAAGGGTGAAATCGATCAACGAGCCTCTTCGACCAAGCGCATTC
TCGCCAGCAAAAATGCCCGCAGACGTAGGCATTCAGAGCGAAGCGGGGAG
CAGAAGCACAGGACAACGGGGATTTTCTCCTCCCCCATCGTGCGCTGATG
CTGCTGCTGCAACTAATGCCGGGACAAAAAATGCCGCACCTTTCCACAGC
AATGGCTTTGGATGCGACGGCGGTGCTGGTGCCGGCTTTCCTACTCCGGT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig208:43126..43526+

>mRNA_L-elsbetiae_contig208.6287.1 ID=mRNA_L-elsbetiae_contig208.6287.1|Name=mRNA_L-elsbetiae_contig208.6287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig208:43126..43526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGCCAACACGGAGCGCCAGAAAATCGAAGAGTTCTCGACGAAGGT
ATCAATGACGGCGGCGGCGGCGGCCACCGCCGCTGCTGCAGCACCCGCCA
TCGGAAATGCAGCCATTGACGTCGGATCAAGGGTGAAATCGATCAACGAG
CCTCTTCGACCAAGCGCATTCTCGCCAGCAAAAATGCCCGCAGACGTAGG
CATTCAGAGCGAAGCGGGGAGCAGAAGCACAGGACAACGGGGATTTTCTC
CTCCCCCATCGTGCGCTGATGCTGCTGCTGCAACTAATGCCGGGACAAAA
AATGCCGCACCTTTCCACAGCAATGGCTTTGGATGCGACGGCGGTGCTGG
TGCCGGCTTTCCTACTCCGGTGATGTGGGCCAACACGGAGCGCCAGAAAA
TCGAAGAGTTCTCGACGAAGGTATCAATGACGGCGGCGGCGGCGGCCACC
GCCGCTGCTGCAGCACCCGCCATCGGAAATGCAGCCATTGACGTCGGATC
AAGGGTGAAATCGATCAACGAGCCTCTTCGACCAAGCGCATTCTCGCCAG
CAAAAATGCCCGCAGACGTAGGCATTCAGAGCGAAGCGGGGAGCAGAAGC
ACAGGACAACGGGGATTTTCTCCTCCCCCATCGTGCGCTGATGCTGCTGC
TGCAACTAATGCCGGGACAAAAAATGCCGCACCTTTCCACAGCAATGGCT
TTGGATGCGACGGCGGTGCTGGTGCCGGCTTTCCTACTCCGGTG
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