mRNA_L-elsbetiae_contig208.6286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig208.6286.1
Unique NamemRNA_L-elsbetiae_contig208.6286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6286.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 9.220e-29
Identity = 83/183 (45.36%), Postives = 90/183 (49.18%), Query Frame = 2 
Query:   74 QDLDEAVLDRVDEVIQLPKPGLAERARLIRQYFSAYLHHDPPADFLHLPAXXXXXXXXXXXXXXXXXXXXXXXXXXAARRTSHDGHGSSGRDTLRPKRAAPSLHPELEGGTEGFP----PAPAAGEEAGTREQGDGXXXXXRACDGAVPLSEGFTDRAPGLMAMLAVRSEGFYGRDMAHFFSA 610
            QDLDEA+LDRVDEV+ LP PG  ERARLIRQYFS+YLHHDPPADFL   A                           AR    +     GR T   K A               P    PA    +E      G G         G V LS+GF  +A GLMAMLAVRSEGFYGRDM HFFSA
Sbjct:  679 QDLDEAILDRVDEVVHLPTPGFPERARLIRQYFSSYLHHDPPADFLRATAVLGSAE---------------------ARAEFVESRREGGRPTAMAKAATXXXXXXXXXXXXXQPEAHLPADTTEDEKENPRTGGGG--------GVVRLSDGFRAKAAGLMAMLAVRSEGFYGRDMEHFFSA 832
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BLAST of mRNA_L-elsbetiae_contig208.6286.1 vs. uniprot
Match: A0A6H5L1Y3_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.880e-21
Identity = 95/248 (38.31%), Postives = 108/248 (43.55%), Query Frame = 2 
Query:    2 TLYLTCG*INVGQLYIPRYFGRPTQDLDEAVLDRVDEVIQLPKPGLAERARLIRQYFSAYLHHDPPADFLHLPAXXXXXXXXXXXXXXXXXXXXXXXXXXAAR-----RT--------------SHDGHGSSGRDTLRPKRAAPSLHPELEGGTE--GFPPAPAAGEEAGTREQGDGXXXXXRACDG------------------------AVPLSEGFTDRAPGLMAMLAVRSEGFYGRDMAHFFSA 610
             + L+ G +  G L +     RP QDLDEA+LDRVDEV+ LP PGL ERARLIRQYF +YLHHDPP DFL  PA                          +A      RT              S+   GS   D +     A     E     +  G P A A    A        XXXXX                              V LS+GF  +A GLMAMLAVRSEGFYGRDMAHFFSA
Sbjct:  194 AVLLSTGELRAGFLMVLTT-SRP-QDLDEAILDRVDEVVHLPTPGLPERARLIRQYFCSYLHHDPPTDFLRAPAALGSAAARAVRAPAVEAISPVGGRESSAAGGWHFRTNSTSXXXXXXXXIDSNSNTGSRDIDNVDRDLDANGERQEFVASRKEGGRPTAMAKVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRLSDGFRAKAAGLMAMLAVRSEGFYGRDMAHFFSA 439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS39_ECTSI9.220e-2945.36AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L1Y3_9PHAE1.880e-2138.31AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:42130..42740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.2551322-CDS-L-elsbetiae_contig208:42129..424771622815854.2551322-CDS-L-elsbetiae_contig208:42129..42477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 42130..42477 +
1691683147.6671338-CDS-L-elsbetiae_contig208:42129..424771691683147.6671338-CDS-L-elsbetiae_contig208:42129..42477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 42130..42477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.267175-UTR-L-elsbetiae_contig208:42477..427401622815854.267175-UTR-L-elsbetiae_contig208:42477..42740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 42478..42740 +
1691683147.6770356-UTR-L-elsbetiae_contig208:42477..427401691683147.6770356-UTR-L-elsbetiae_contig208:42477..42740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig208 42478..42740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6286.1prot_L-elsbetiae_contig208.6286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig208 42130..42477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig208.6286.1

>prot_L-elsbetiae_contig208.6286.1 ID=prot_L-elsbetiae_contig208.6286.1|Name=mRNA_L-elsbetiae_contig208.6286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
HTLSDLWLDQCRSTIYTPLFRASNAGPRRGGPRPGGRGDTAAETGARREG
PAHPPVLLCLPPPRPAGRLLASAGAGAGAGVGGCVDGHDDKGSTGWRRRS
SSEEDKSRRPRIERS*
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mRNA from alignment at L-elsbetiae_contig208:42130..42740+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig208.6286.1 ID=mRNA_L-elsbetiae_contig208.6286.1|Name=mRNA_L-elsbetiae_contig208.6286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig208:42130..42740+ (Laminarionema elsbetiae ELsaHSoW15)
CACACTTTATCTGACTTGTGGTTAGATCAATGTCGGTCAACTATATATAC
CCCGTTATTTCGGGCGTCCAACGCAGGACCTCGACGAGGCGGTCCTAGAC
CGGGTGGACGAGGTGATACAGCTGCCGAAACCGGGGCTCGCCGAGAGGGC
CCGGCTCATCCGCCAGTACTTCTCTGCCTACCTCCACCACGACCCGCCGG
CCGACTTCTTGCATCTGCCGGCGCCGGCGCCGGCGCCGGGGTCGGCGGCT
GCGTCGACGGGCACGACGACAAAGGAAGCACGGGGTGGAGGAGGAGGAGC
AGCAGCGAGGAGGACAAGTCACGACGGCCACGGATCGAGCGGTCGTGACA
CGCTCAGGCCGAAAAGGGCGGCTCCCTCTCTGCACCCGGAGCTGGAAGGG
GGAACGGAGGGCTTTCCCCCGGCGCCGGCGGCGGGAGAAGAGGCCGGGAC
GCGCGAGCAAGGCGATGGTCACAGGGGGGATGGCCGGGCGTGTGACGGTG
CGGTGCCCCTGAGCGAAGGGTTCACAGATAGGGCGCCGGGGCTGATGGCG
ATGCTCGCGGTCCGGAGCGAAGGGTTCTACGGAAGGGACATGGCGCACTT
TTTTTCGGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig208:42130..42740+

>mRNA_L-elsbetiae_contig208.6286.1 ID=mRNA_L-elsbetiae_contig208.6286.1|Name=mRNA_L-elsbetiae_contig208.6286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig208:42130..42740+ (Laminarionema elsbetiae ELsaHSoW15)
CACACTTTATCTGACTTGTGGTTAGATCAATGTCGGTCAACTATATATAC
CCCGTTATTTCGGGCGTCCAACGCAGGACCTCGACGAGGCGGTCCTAGAC
CGGGTGGACGAGGTGATACAGCTGCCGAAACCGGGGCTCGCCGAGAGGGC
CCGGCTCATCCGCCAGTACTTCTCTGCCTACCTCCACCACGACCCGCCGG
CCGACTTCTTGCATCTGCCGGCGCCGGCGCCGGCGCCGGGGTCGGCGGCT
GCGTCGACGGGCACGACGACAAAGGAAGCACGGGGTGGAGGAGGAGGAGC
AGCAGCGAGGAGGACAAGTCACGACGGCCACGGATCGAGCGGTCGTGACA
CACTTTATCTGACTTGTGGTTAGATCAATGTCGGTCAACTATATATACCC
CGTTATTTCGGGCGTCCAACGCAGGACCTCGACGAGGCGGTCCTAGACCG
GGTGGACGAGGTGATACAGCTGCCGAAACCGGGGCTCGCCGAGAGGGCCC
GGCTCATCCGCCAGTACTTCTCTGCCTACCTCCACCACGACCCGCCGGCC
GACTTCTTGCATCTGCCGGCGCCGGCGCCGGCGCCGGGGTCGGCGGCTGC
GTCGACGGGCACGACGACAAAGGAAGCACGGGGTGGAGGAGGAGGAGCAG
CAGCGAGGAGGACAAGTCACGACGGCCACGGATCGAGCGGTCGTGA
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