mRNA_L-elsbetiae_contig208.6284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig208.6284.1
Unique NamemRNA_L-elsbetiae_contig208.6284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6284.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 6.790e-25
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 MKLDLAKILAKEKASLAVQTLHEAEKGMGKLDSMEESLRMSTEVALLLLDVEAAAQTARLSSNRRLSERLAYLKATKSAEREGEAAEVARIKIRGTEA 294
            M+L+LA  LA+EKASLAVQ L E +KG+ +L  +EESLRM+T+VALLLLD+EAA QTA+LSS+RRL+E LA L+ATK AEREGEA + ARI+ +G EA
Sbjct:  350 MELELAITLAEEKASLAVQNLREEQKGLEELIPVEESLRMATDVALLLLDMEAANQTAKLSSDRRLAEGLATLQATKEAEREGEATDKARIRAKGAEA 447
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BLAST of mRNA_L-elsbetiae_contig208.6284.1 vs. uniprot
Match: A0A6H5L202_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L202_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.210e-13
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  118 MSTEVALLLLDVEAAAQTARLSSNRRLSERLAYLKATKSAEREGEAAEVARIKIRGTEA 294
            M+T+VALLLLD+EAA QTA+LSSNRRL++ LA  +ATK AEREGEA + ARI+ +G EA
Sbjct:    1 MATDVALLLLDMEAANQTAKLSSNRRLAKSLATFQATKEAEREGEATDKARIRAKGAEA 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS39_ECTSI6.790e-2566.33AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L202_9PHAE2.210e-1367.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:38116..39040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog2880.D7FS39
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-16_004460.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons3
Model size296
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6284.1prot_L-elsbetiae_contig208.6284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig208 38116..39040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.8214903-CDS-L-elsbetiae_contig208:38115..382201622815854.8214903-CDS-L-elsbetiae_contig208:38115..38220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38116..38220 +
1691683148.076726-CDS-L-elsbetiae_contig208:38115..382201691683148.076726-CDS-L-elsbetiae_contig208:38115..38220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38116..38220 +
1622815854.831986-CDS-L-elsbetiae_contig208:38712..388011622815854.831986-CDS-L-elsbetiae_contig208:38712..38801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38713..38801 +
1691683148.0903275-CDS-L-elsbetiae_contig208:38712..388011691683148.0903275-CDS-L-elsbetiae_contig208:38712..38801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38713..38801 +
1622815854.8449333-CDS-L-elsbetiae_contig208:38940..390401622815854.8449333-CDS-L-elsbetiae_contig208:38940..39040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38941..39040 +
1691683148.1009421-CDS-L-elsbetiae_contig208:38940..390401691683148.1009421-CDS-L-elsbetiae_contig208:38940..39040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig208 38941..39040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig208.6284.1

>prot_L-elsbetiae_contig208.6284.1 ID=prot_L-elsbetiae_contig208.6284.1|Name=mRNA_L-elsbetiae_contig208.6284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MKLDLAKILAKEKASLAVQTLHEAEKGMGKLDSMEESLRMSTEVALLLLD
VEAAAQTARLSSNRRLSERLAYLKATKSAEREGEAAEVARIKIRGTEA
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mRNA from alignment at L-elsbetiae_contig208:38116..39040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig208.6284.1 ID=mRNA_L-elsbetiae_contig208.6284.1|Name=mRNA_L-elsbetiae_contig208.6284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=925bp|location=Sequence derived from alignment at L-elsbetiae_contig208:38116..39040+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTCGACCTCGCGAAGATTCTCGCAAAAGAAAAGGCTTCCCTGGC
GGTTCAAACCCTGCATGAGGCAGAGAAAGGGATGGGCAAGCTCGATTCCA
TGGAGGTGTGCGACGCTAGCTAGCATCATGGTACATACGATGTGACTTTC
CGAGATCACGAAGAGTACCTTTTTGGTGTACTCGGGTCCCAGGAAACTAC
AACTACAGGGGGGCTTCTTTGTCTATGGCAGTTGCAGCGATGGCATAGAA
ACACAACAGCTGGTGATGCTTGGTGATGCTTTGTATTTGTTTACACGAGT
AGTCGGCCCTCCGAAGTAACGACCACGCCTCGATTCAATCGAGCTTTATT
TAGTCAATGTATTGCCTTGCTTTCGCGGTGTTGCATTTCAATATGTAGTG
ACATACTGGTATGCGGTTCTTCATACATATCTGTTGCATGCTGTTATATG
CTGCGCGCTCGTTCTTCCTCCGTCCCGCCTGCGGAGGAGTGTGCTGACCT
TCGTGGTGTTTGCTCTCCTTCCGATCGTTCGCTGCCACACGCCGAAACGG
CCGGAACAAACACTAAAATCAACCGCGTGGGGTTGGGTGGGGGATAGGAG
TCCCTCCGAATGTCGACGGAGGTCGCCCTTCTTTTACTCGACGTCGAAGC
AGCAGCGCAGACTGCCAGGCTCTCCTCCAACCGCAGGTAAGTGCGGCAGG
GCACGGCAGAGAACCGTTGAATTGTGAGTCCTGAGTAGATTTCACGAGAA
AAGACTCTTGCACATCTGGTTTTACGCTTAGTACCCCCTCCCTTCTCTCC
AAAACCAAACTAAATTAATTCGAAGGCTGTCTGAAAGATTGGCCTACCTC
AAAGCGACGAAGAGCGCGGAGCGAGAAGGCGAGGCGGCGGAGGTGGCTAG
GATCAAGATCAGGGGGACAGAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig208:38116..39040+

>mRNA_L-elsbetiae_contig208.6284.1 ID=mRNA_L-elsbetiae_contig208.6284.1|Name=mRNA_L-elsbetiae_contig208.6284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig208:38116..39040+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTCGACCTCGCGAAGATTCTCGCAAAAGAAAAGGCTTCCCTGGC
GGTTCAAACCCTGCATGAGGCAGAGAAAGGGATGGGCAAGCTCGATTCCA
TGGAGATGAAGCTCGACCTCGCGAAGATTCTCGCAAAAGAAAAGGCTTCC
CTGGCGGTTCAAACCCTGCATGAGGCAGAGAAAGGGATGGGCAAGCTCGA
TTCCATGGAGGAGTCCCTCCGAATGTCGACGGAGGTCGCCCTTCTTTTAC
TCGACGTCGAAGCAGCAGCGCAGACTGCCAGGCTCTCCTCCAACCGCAGG
AGTCCCTCCGAATGTCGACGGAGGTCGCCCTTCTTTTACTCGACGTCGAA
GCAGCAGCGCAGACTGCCAGGCTCTCCTCCAACCGCAGGCTGTCTGAAAG
ATTGGCCTACCTCAAAGCGACGAAGAGCGCGGAGCGAGAAGGCGAGGCGG
CGGAGGTGGCTAGGATCAAGATCAGGGGGACAGAAGCCGCTGTCTGAAAG
ATTGGCCTACCTCAAAGCGACGAAGAGCGCGGAGCGAGAAGGCGAGGCGG
CGGAGGTGGCTAGGATCAAGATCAGGGGGACAGAAGCC
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