mRNA_L-elsbetiae_contig208.6280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig208.6280.1
Unique Name	mRNA_L-elsbetiae_contig208.6280.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig208.6280.1 vs. uniprot
Match: A0A6H5LJ83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ83_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 2.810e-75
Identity = 128/162 (79.01%), Postives = 137/162 (84.57%), Query Frame = 3

Query:   93 KRKPDWPVGTPAPGRDQTIGEAFAAMQHHARGTRKVKPGVLNGILRQVTSADELKYATLGLQVFKTQGIDLHAKTGTLFVKACCKAGSPQTAVDALGEAGKYGLDAEGVVTAHRFNYLLSQLYKAGDSGGFARAVSEARSRPQSLNARSHTLIAKFEEEVRA 578
            KRK DW  GTP  GRDQTIGEAFAAMQ+HARGTRKVK  VLN IL +VTSA++LKYA LGL++FKTQGIDL  KT TLFVKACCKAGSPQ AVD LGEA KYGLD EGVV+AHRFNYLLSQLY AGDS  F RAVSEA  R QSLNARSHTLI+KFE E+RA
Sbjct:   73 KRKQDWAPGTPPAGRDQTIGEAFAAMQYHARGTRKVKASVLNRILERVTSAEDLKYACLGLKIFKTQGIDLEKKTATLFVKACCKAGSPQMAVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLISKFEGEMRA 234

[Close]

BLAST of mRNA_L-elsbetiae_contig208.6280.1 vs. uniprot
Match: D7FS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS35_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.050e-25
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 3

Query:  366 AVDALGEAGKYGLDAEGVVTAHRFNYLLSQLYKAGDSGGFARAVSEARSRPQSLNARSHTLIAKFEEEVRA 578
            AVD LGEA KYGLD EGVV+AHRFNYLLSQLY AGDS  F RAVSEA  R QSLNARSHTLIAKFE E+RA
Sbjct:    2 AVDVLGEAAKYGLDGEGVVSAHRFNYLLSQLYIAGDSETFTRAVSEAEHRQQSLNARSHTLIAKFEGEMRA 72

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig208.6280.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig208.6280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LJ83_9PHAE	2.810e-75	79.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FS35_ECTSI	5.050e-25	81.69	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig208	contig	L-elsbetiae_contig208:6375..8975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-16_004500.1
Exons	4
Model size	1439
Cds size	663
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig208.6280.1	prot_L-elsbetiae_contig208.6280.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig208 6542..8366 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815854.3460336-UTR-L-elsbetiae_contig208:6374..6541	1622815854.3460336-UTR-L-elsbetiae_contig208:6374..6541	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig208 6375..6541 +
1691683147.7237105-UTR-L-elsbetiae_contig208:6374..6541	1691683147.7237105-UTR-L-elsbetiae_contig208:6374..6541	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig208 6375..6541 +
1622815854.4123552-UTR-L-elsbetiae_contig208:8366..8975	1622815854.4123552-UTR-L-elsbetiae_contig208:8366..8975	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig208 8367..8975 +
1691683147.7747734-UTR-L-elsbetiae_contig208:8366..8975	1691683147.7747734-UTR-L-elsbetiae_contig208:8366..8975	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig208 8367..8975 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815854.3592534-CDS-L-elsbetiae_contig208:6541..6571	1622815854.3592534-CDS-L-elsbetiae_contig208:6541..6571	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 6542..6571 +
1691683147.7351727-CDS-L-elsbetiae_contig208:6541..6571	1691683147.7351727-CDS-L-elsbetiae_contig208:6541..6571	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 6542..6571 +
1622815854.3718102-CDS-L-elsbetiae_contig208:6827..6965	1622815854.3718102-CDS-L-elsbetiae_contig208:6827..6965	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 6828..6965 +
1691683147.745005-CDS-L-elsbetiae_contig208:6827..6965	1691683147.745005-CDS-L-elsbetiae_contig208:6827..6965	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 6828..6965 +
1622815854.3851602-CDS-L-elsbetiae_contig208:7388..7533	1622815854.3851602-CDS-L-elsbetiae_contig208:7388..7533	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 7389..7533 +
1691683147.7566762-CDS-L-elsbetiae_contig208:7388..7533	1691683147.7566762-CDS-L-elsbetiae_contig208:7388..7533	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 7389..7533 +
1622815854.3981225-CDS-L-elsbetiae_contig208:8016..8366	1622815854.3981225-CDS-L-elsbetiae_contig208:8016..8366	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 8017..8366 +
1691683147.7658565-CDS-L-elsbetiae_contig208:8016..8366	1691683147.7658565-CDS-L-elsbetiae_contig208:8016..8366	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig208 8017..8366 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig208:6375..8975+
coding sequence from alignment at L-elsbetiae_contig208:6375..8975+

protein sequence of mRNA_L-elsbetiae_contig208.6280.1

>prot_L-elsbetiae_contig208.6280.1 ID=prot_L-elsbetiae_contig208.6280.1|Name=mRNA_L-elsbetiae_contig208.6280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MQHHARGTRKVKPGVLNGILRQVTSADELKYATLGLQVFKTQGIDLHAKT
GTLFVKACCKAGSPQTAVDALGEAGKYGLDAEGVVTAHRFNYLLSQLYKA
GDSGGFARAVSEARSRPQSLNARSHTLIAKFEEEVRAKEEEAARAKAEEE
RVAKEAEEKAKREEEEAELKAKEEAAQEEARLKEEEENKAKGEAAAAELA
EDAGAPSSEGDAQPGVDAKR*

mRNA from alignment at L-elsbetiae_contig208:6375..8975+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig208.6280.1 ID=mRNA_L-elsbetiae_contig208.6280.1|Name=mRNA_L-elsbetiae_contig208.6280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2601bp|location=Sequence derived from alignment at L-elsbetiae_contig208:6375..8975+ (Laminarionema elsbetiae ELsaHSoW15)
GGACACCCGCAAGAAGTCTTAGCGATGCCGCCGCTGCATCGGCACCGCCG
TCGTCGTCGTCGGCAGCAGCAGCAGCAGCAGCAGCAGAGGGCAAAAGAAA
GCCGGATTGGCCTGTTGGCACGCCTGCTCCGGGAAGAGACCAGACCATCG
GGGAGGCCTTTGCTGCTATGCAACATCATGCGAGGGGCACAAGAAAGGTA
TGGACATGTGTAGTAGATTTTCCCCTTTCGCACCAACAACCCAACCAGCG
AACGGGCAAGGGAGAGGTACTTTGGATACATACTTGTTTTTCTACGAACC
CTGAACCGGAAGTACATCGTGTGTTCCCGTAGACCGTAGCTCCCCTTCAC
CAGGGGGTGGATCTCGCCGTTGGTTCCCTCGGTTTTTCGATATTTAAGCT
CCATTCTCTCACAAAACCCCACCCGATTCTTTATTTTCTCCTTCCCTCGA
AAGGTCAAGCCCGGCGTTTTGAATGGCATCTTGCGGCAAGTTACTTCCGC
AGACGAGCTTAAATACGCAACCTTAGGGCTACAAGTATTTAAGACGCAGG
GGATCGATCTCCACGCCAAGACCGGAACTCTCTTTGTCAAGGTATGTATG
CAGGTACACGGTGATGGTGCACGCGCGAGGGTGTGATGCAGTCCACCGGA
ACGAGTCAGCTGATTTCCTGCTCTGCGGGAGACACTCTTGATTCGACTCG
AACCGGAGCTAGAGAGCGTCACACTGTTTGGTTGCGCAGGGCCCGTGTCC
CACCCAGTTGGTAACGTGCACCTTTTTCTGTCTACAGTATCGTGCTCTAT
CGTTGTGGCACGTATACGTATGTATGTGTATACGTGTGGGTGGATCACGC
CTCCTTCCATTTACCCGAGACTCCACTGACCCTGGGCACCTCTCCCGCAC
TTGTAGCGCCACGTTATTTATCCGCCGCTCTCGCGTTTCGCGCTTGTTTT
TTTCTTCGTCATCGCTGGACGTTTGCTCTGTCCCCTCCGTTCGTCTCATG
AACCTTTCTCCAAGGCTTGCTGTAAGGCGGGATCGCCCCAGACGGCAGTG
GATGCCCTTGGGGAGGCAGGGAAGTACGGCTTAGACGCAGAGGGGGTGGT
GACCGCGCACCGTTTCAACTATCTTTTGAGCCAGCTTTACAAGGCGGGAG
ACTCGGGTGGTGAGTGTGTTTGCTGTGGGCTGTGTGCATGTACCAACACG
CTGTAGTCCTTTTTGCTTTTTGTGGTATCAAACATGCTACAATACGGTTC
TTCCCTTACTGTTAATTGCCGGCGCATACTTTCCCACCCAGGCCCCACAA
GCTCGCTCAAGCGTATTTCCCCAAAAGACTACTGCCAAGTCTTTTTTGTC
TCCAAACGTAGTTTTCAGATCTTTTTGTGTCAGGTCGATGCAAGCCTTCC
TCTCCCTCGAAGATCGCCCAGTTATTTTCACCGTCTGTTTGGATTTGGAG
TACTGAAGGAAGCGCGCTTCCGCCTCGAAAGGGGTTTGGCCGGTTGTCAA
CGGACCTTAGAAAGGGGAGTACAGCATGTAAACACGCCCCGTTGGTGGCC
GCCCTTCCTCCCTGCTCTGCTCTCAACACCATTCGCCCCGTTCCGGCGCT
GCTGCTACTGCTGCGACATGGGACATGTTTGCCTCTTGGCAGGCTTCGCA
CGCGCGGTCTCGGAGGCTCGATCCCGGCCGCAGTCCCTCAACGCGCGTTC
GCACACCCTGATCGCCAAGTTTGAGGAAGAGGTGAGGGCGAAAGAGGAGG
AAGCGGCGAGGGCCAAGGCCGAGGAGGAGAGGGTCGCGAAGGAGGCGGAA
GAAAAAGCCAAGAGGGAAGAGGAGGAAGCGGAGTTGAAAGCCAAGGAGGA
AGCTGCGCAGGAAGAGGCCAGGCTCAAGGAGGAAGAGGAAAACAAGGCCA
AGGGAGAGGCAGCAGCGGCAGAGTTGGCCGAGGACGCTGGTGCTCCGTCC
TCTGAAGGCGATGCCCAGCCGGGTGTGGACGCCAAGCGATGAGCACTCCG
GCAAACATTTGGTTGTCTGGTGGCCAACTCATCGCTCGTGCGACAGATAC
TTCGTGGCCGGCGGTGCTGAATAGAGTGGGGCAAAGTTTGACGACTGGGG
GCAAAAGGCGAAACAGCGACGAACATGCAGAGAGTATCGCTGAGCTGGGG
TTTACTCGATGAGTAGAACGACGGAGGAAGGGGAGGTATGTTGGAGGGGA
AAGTGTGTTGGCTGGTTTGCGCGCTTGGTCGAATTTATTTAAGGTTCCAT
CGTGTGGAGTTGACGGATATATCGGCGCGATTGGTGTGTCTTGTGACCCA
AGGCTATTTTCACACCCAATGTGACTTTGTGTGCAGCCTCTCCTGTGTAG
CGGTTAGGTCGTCATGATACCTTGGCTCTTGCTGCTCCCTCTGCGTGTCT
CAAATCGCATTTTTTTTGTTGGAGGGGCTCTCCCCCTGCCGCACACTAGA
GGTACATACACCTCCCCCGACAGCAGTTGGCGTTGTCTTCGCAAAGTAGC
AGAAACAGTGCTGTCTCAGAGACAGATGCATGCGCGGCCAATGCCCAGTG
ACTAACTACTACCTACTATAAAGGCATCCAGGAAATCAGTTCGCCTTCGT
C

Coding sequence (CDS) from alignment at L-elsbetiae_contig208:6375..8975+

>mRNA_L-elsbetiae_contig208.6280.1 ID=mRNA_L-elsbetiae_contig208.6280.1|Name=mRNA_L-elsbetiae_contig208.6280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig208:6375..8975+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACATCATGCGAGGGGCACAAGAAAGATGCAACATCATGCGAGGGG
CACAAGAAAGGTCAAGCCCGGCGTTTTGAATGGCATCTTGCGGCAAGTTA
CTTCCGCAGACGAGCTTAAATACGCAACCTTAGGGCTACAAGTATTTAAG
ACGCAGGGGATCGATCTCCACGCCAAGACCGGAACTCTCTTTGTCAAGGT
CAAGCCCGGCGTTTTGAATGGCATCTTGCGGCAAGTTACTTCCGCAGACG
AGCTTAAATACGCAACCTTAGGGCTACAAGTATTTAAGACGCAGGGGATC
GATCTCCACGCCAAGACCGGAACTCTCTTTGTCAAGGCTTGCTGTAAGGC
GGGATCGCCCCAGACGGCAGTGGATGCCCTTGGGGAGGCAGGGAAGTACG
GCTTAGACGCAGAGGGGGTGGTGACCGCGCACCGTTTCAACTATCTTTTG
AGCCAGCTTTACAAGGCGGGAGACTCGGGTGGCTTGCTGTAAGGCGGGAT
CGCCCCAGACGGCAGTGGATGCCCTTGGGGAGGCAGGGAAGTACGGCTTA
GACGCAGAGGGGGTGGTGACCGCGCACCGTTTCAACTATCTTTTGAGCCA
GCTTTACAAGGCGGGAGACTCGGGTGGCTTCGCACGCGCGGTCTCGGAGG
CTCGATCCCGGCCGCAGTCCCTCAACGCGCGTTCGCACACCCTGATCGCC
AAGTTTGAGGAAGAGGTGAGGGCGAAAGAGGAGGAAGCGGCGAGGGCCAA
GGCCGAGGAGGAGAGGGTCGCGAAGGAGGCGGAAGAAAAAGCCAAGAGGG
AAGAGGAGGAAGCGGAGTTGAAAGCCAAGGAGGAAGCTGCGCAGGAAGAG
GCCAGGCTCAAGGAGGAAGAGGAAAACAAGGCCAAGGGAGAGGCAGCAGC
GGCAGAGTTGGCCGAGGACGCTGGTGCTCCGTCCTCTGAAGGCGATGCCC
AGCCGGGTGTGGACGCCAAGCGATGAGCTTCGCACGCGCGGTCTCGGAGG
CTCGATCCCGGCCGCAGTCCCTCAACGCGCGTTCGCACACCCTGATCGCC
AAGTTTGAGGAAGAGGTGAGGGCGAAAGAGGAGGAAGCGGCGAGGGCCAA
GGCCGAGGAGGAGAGGGTCGCGAAGGAGGCGGAAGAAAAAGCCAAGAGGG
AAGAGGAGGAAGCGGAGTTGAAAGCCAAGGAGGAAGCTGCGCAGGAAGAG
GCCAGGCTCAAGGAGGAAGAGGAAAACAAGGCCAAGGGAGAGGCAGCAGC
GGCAGAGTTGGCCGAGGACGCTGGTGCTCCGTCCTCTGAAGGCGATGCCC
AGCCGGGTGTGGACGCCAAGCGATGA