mRNA_L-elsbetiae_contig20784.6276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20784.6276.1
Unique NamemRNA_L-elsbetiae_contig20784.6276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20784.6276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20784contigL-elsbetiae_contig20784:20..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1411
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20784.6276.1prot_L-elsbetiae_contig20784.6276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20784 90..1413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.8713372-UTR-L-elsbetiae_contig20784:19..891622815853.8713372-UTR-L-elsbetiae_contig20784:19..89Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20784 20..89 +
1691683147.4741824-UTR-L-elsbetiae_contig20784:19..891691683147.4741824-UTR-L-elsbetiae_contig20784:19..89Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20784 20..89 +
1622815853.9295578-UTR-L-elsbetiae_contig20784:1413..20071622815853.9295578-UTR-L-elsbetiae_contig20784:1413..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20784 1414..2007 +
1691683147.5200057-UTR-L-elsbetiae_contig20784:1413..20071691683147.5200057-UTR-L-elsbetiae_contig20784:1413..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20784 1414..2007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.8819444-CDS-L-elsbetiae_contig20784:89..3351622815853.8819444-CDS-L-elsbetiae_contig20784:89..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 90..335 +
1691683147.4826863-CDS-L-elsbetiae_contig20784:89..3351691683147.4826863-CDS-L-elsbetiae_contig20784:89..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 90..335 +
1622815853.8929863-CDS-L-elsbetiae_contig20784:494..6501622815853.8929863-CDS-L-elsbetiae_contig20784:494..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 495..650 +
1691683147.4918742-CDS-L-elsbetiae_contig20784:494..6501691683147.4918742-CDS-L-elsbetiae_contig20784:494..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 495..650 +
1622815853.9032114-CDS-L-elsbetiae_contig20784:887..10161622815853.9032114-CDS-L-elsbetiae_contig20784:887..1016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 888..1016 +
1691683147.5027797-CDS-L-elsbetiae_contig20784:887..10161691683147.5027797-CDS-L-elsbetiae_contig20784:887..1016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 888..1016 +
1622815853.9131143-CDS-L-elsbetiae_contig20784:1197..14131622815853.9131143-CDS-L-elsbetiae_contig20784:1197..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 1198..1413 +
1691683147.5113075-CDS-L-elsbetiae_contig20784:1197..14131691683147.5113075-CDS-L-elsbetiae_contig20784:1197..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20784 1198..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20784.6276.1

>prot_L-elsbetiae_contig20784.6276.1 ID=prot_L-elsbetiae_contig20784.6276.1|Name=mRNA_L-elsbetiae_contig20784.6276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MSTSSALPPQAKEPSFAEALEDKMEKSALGLDVLASVVSNEQYLPKTAPG
PHLLAGVVTGADANTAKKTRAAAYSSRPGATKEETFAAKVLVLLSTGKTT
KADVSVRVLVFRDGPVTKTVKANMEAHFGQSGSEVTVTDLVAQWSACDPL
GPNHDRVEDLRARSFTPYFAPDVDCLVAVGCSRADGDHLRLIFEATSHGE
FVCIPWRTEDELNHVTENMMPRLGIRELIEADIERVEGMLSRLNPGLV*
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mRNA from alignment at L-elsbetiae_contig20784:20..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20784.6276.1 ID=mRNA_L-elsbetiae_contig20784.6276.1|Name=mRNA_L-elsbetiae_contig20784.6276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1988bp|location=Sequence derived from alignment at L-elsbetiae_contig20784:20..2007+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGATGTGGCAGTCACCATACAGATCCAGTTGTGGACTCAGGAGCAGC
AACAAACACAGGAACTACACATGTCGACCAGTTCAGCATTGCCGCCTCAG
GCCAAGGAGCCCTCCTTTGCTGAAGCGCTGGAGGACAAAATGGAGAAATC
CGCACTCGGTCTCGATGTTCTAGCTTCCGTCGTCAGCAACGAGCAGTACT
TACCGAAGACCGCACCCGGCCCCCATCTTCTGGCTGGTGTGGTGACCGGA
GCAGATGCAAACACGGCCAAGAAGACACGTGCCGCCGCGTACAGCAGTCG
CCCAGGCGCGACGAAGGTAGCTTCTAGTTGATTGCTTGTACTTGATGAGT
CGTTTTCACGTTTTACGGGAGCGCGTGTTGTTTCCAGGTGTTAGGCACAA
CATTGAAAGGGGTGTTGTTCTCCTCCTTGCTTTTTCTCATTCGGAAATAT
TGAAAATGTCTACATATATCTCTAGGAGGAGACTTTCGCTGCTAAGGTTT
TGGTCCTGCTCAGTACCGGCAAGACCACCAAGGCCGATGTCAGCGTGCGC
GTTCTCGTCTTCAGGGACGGCCCCGTAACGAAGACGGTCAAAGCCAACAT
GGAGGCCCACTTCGGGCAGAGTGGCAGCGAGGTAAACGCCCTGTTGCTAA
ACTCTGAACATATATCCCCTGCAGGAATTCACTTCTGTATGTAACGCAGT
ACATGTTTCCCACGCCAAAATGTTTGTATGTACTCAGTATGTATTATGTG
TTGAGACCTGGTATGGTATGATGTGAGCATTTATTTACCGCTTTGTGGGT
GCTGCTTTCTCTCGTGTACATGTACCTTGTTACTTACTACTCTCCGTAAT
ATTTTTTCTTGAACGCAGGTCACGGTCACCGACCTGGTGGCGCAGTGGTC
AGCATGCGATCCTTTGGGGCCCAACCACGACAGGGTAGAGGATCTGAGGG
CAAGATCGTTCACGCCTTACTTTGCACCAGATGTCGACTGCCTGGTGGTG
AGGAACAAAAACGAAACATGGATTGCCTCCGTAATTTGTTTTTCCCTCGT
TCTATCTGTTCATGCCCACCTTTGTTTTCGATCGTGTCAACTTCTTGATT
TCTTCCGGATGTTTTTTTTTTCTGTACTGATCGTGATGATACTCTGCCCC
TGCTTGCCGCGTCGTTTGGTCCCGTCAGGCCGTTGGCTGTAGCCGGGCAG
ACGGCGACCACCTGCGGCTGATCTTCGAAGCGACGAGCCACGGGGAATTT
GTGTGCATACCCTGGAGGACGGAGGATGAGTTGAACCATGTCACGGAAAA
CATGATGCCCCGACTGGGCATCCGAGAGTTGATCGAGGCAGACATCGAGA
GGGTAGAGGGGATGCTGTCCCGACTCAATCCAGGGCTGGTGTAATTTGTT
TTTTTTAACCATCTGTCTAGTATTATGTATCTACAATATCTGTACAAAGC
ATAGAAATTCAGAGCCAGCGAGGGGGGTACGGTTATTCAGGCGGCACATG
CTTTTGAGAGCCCTCTCTCTTTACTTCGCTCGAAGATTTCCCCGAAATGC
AGTCAAGGCGATGAGCTACATACCTATGTATGTTGCATTTACGCGAAGGG
AATTTCCCCGCACGCCGCGGTATAGATAGATAAAGAAGCACGGAGTGCGT
ATTGTAGTAGAATCGAATGTACTCCTGCCGACGTTTCCCGGTTTTTCTCG
GTAGCGAACCAGAGGAGCAGTGTACGAAGTGTGCGCCGAGCTTTATTTTT
TGCCAGGGGTTGTTTGCTGCCTGCATGGCACACTTCGACAACAGCGGTCT
TGCTGGTGTTTTATACCCAAGTATGAAAGGTCGACAGAGAGGAGTGACGG
GGTCGTCTTGGGAATCCAGAAGAAAATGAACAAAATAAAAACTTTTTTCT
CGTCTTTGGGCGTTTGAAAGCCAAATGAAGCAAGCTGCGTAGAGGAGGCA
TCTCTCGTGCCCGCTGGAAGACCTTTGAGGTGTCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20784:20..2007+

>mRNA_L-elsbetiae_contig20784.6276.1 ID=mRNA_L-elsbetiae_contig20784.6276.1|Name=mRNA_L-elsbetiae_contig20784.6276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig20784:20..2007+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACCAGTTCAGCATTGCCGCCTCAGGCCAAGGAGCCCTCCTTTGC
TGAAGCGCTGGAGGACAAAATGGAGAAATCCGCACTCGGTCTCGATGTTC
TAGCTTCCGTCGTCAGCAACGAGCAGTACTTACCGAAGACCGCACCCGGC
CCCCATCTTCTGGCTGGTGTGGTGACCGGAGCAGATGCAAACACGGCCAA
GAAGACACGTGCCGCCGCGTACAGCAGTCGCCCAGGCGCGACGAAGATGT
CGACCAGTTCAGCATTGCCGCCTCAGGCCAAGGAGCCCTCCTTTGCTGAA
GCGCTGGAGGACAAAATGGAGAAATCCGCACTCGGTCTCGATGTTCTAGC
TTCCGTCGTCAGCAACGAGCAGTACTTACCGAAGACCGCACCCGGCCCCC
ATCTTCTGGCTGGTGTGGTGACCGGAGCAGATGCAAACACGGCCAAGAAG
ACACGTGCCGCCGCGTACAGCAGTCGCCCAGGCGCGACGAAGGAGGAGAC
TTTCGCTGCTAAGGTTTTGGTCCTGCTCAGTACCGGCAAGACCACCAAGG
CCGATGTCAGCGTGCGCGTTCTCGTCTTCAGGGACGGCCCCGTAACGAAG
ACGGTCAAAGCCAACATGGAGGCCCACTTCGGGCAGAGTGGCAGCGAGGA
GGAGACTTTCGCTGCTAAGGTTTTGGTCCTGCTCAGTACCGGCAAGACCA
CCAAGGCCGATGTCAGCGTGCGCGTTCTCGTCTTCAGGGACGGCCCCGTA
ACGAAGACGGTCAAAGCCAACATGGAGGCCCACTTCGGGCAGAGTGGCAG
CGAGGTCACGGTCACCGACCTGGTGGCGCAGTGGTCAGCATGCGATCCTT
TGGGGCCCAACCACGACAGGGTAGAGGATCTGAGGGCAAGATCGTTCACG
CCTTACTTTGCACCAGATGTCGACTGCCTGGTGGTCACGGTCACCGACCT
GGTGGCGCAGTGGTCAGCATGCGATCCTTTGGGGCCCAACCACGACAGGG
TAGAGGATCTGAGGGCAAGATCGTTCACGCCTTACTTTGCACCAGATGTC
GACTGCCTGGTGGCCGTTGGCTGTAGCCGGGCAGACGGCGACCACCTGCG
GCTGATCTTCGAAGCGACGAGCCACGGGGAATTTGTGTGCATACCCTGGA
GGACGGAGGATGAGTTGAACCATGTCACGGAAAACATGATGCCCCGACTG
GGCATCCGAGAGTTGATCGAGGCAGACATCGAGAGGGTAGAGGGGATGCT
GTCCCGACTCAATCCAGGGCTGGTGTAAGCCGTTGGCTGTAGCCGGGCAG
ACGGCGACCACCTGCGGCTGATCTTCGAAGCGACGAGCCACGGGGAATTT
GTGTGCATACCCTGGAGGACGGAGGATGAGTTGAACCATGTCACGGAAAA
CATGATGCCCCGACTGGGCATCCGAGAGTTGATCGAGGCAGACATCGAGA
GGGTAGAGGGGATGCTGTCCCGACTCAATCCAGGGCTGGTGTAA
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