mRNA_L-elsbetiae_contig2077.6274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2077.6274.1
Unique NamemRNA_L-elsbetiae_contig2077.6274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: D7FLL1_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL1_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 9.550e-26
Identity = 63/137 (45.99%), Postives = 64/137 (46.72%), Query Frame = 1
Query:    1 RNLASNYWAWRHGLPDLFLWREN-----------------------------------------------------------------KEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRVEDAAGLPPR 216
            RNLASNYWAWRHGLPDLFLWREN                                                                 KE    WVEVKGPGDSLSCAQEAWIDALVGAGADF +LRVEDAA   PR
Sbjct:  998 RNLASNYWAWRHGLPDLFLWRENAAAEQAATAETSRCPMAGSSDQDASDFGADSDPAGSQATVSLDKDRRKNGGGRMATTADVEVLPRKEACCKWVEVKGPGDSLSCAQEAWIDALVGAGADFAVLRVEDAAAGLPR 1134          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A6H5KNP8_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.540e-23
Identity = 62/136 (45.59%), Postives = 63/136 (46.32%), Query Frame = 1
Query:    1 RNLASNYWAWRHGLPDLFLWREN---------------------------------------------KEQGS-------------------LWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRVED--AAGLP 210
            RNLASNYWAWRHGLPDL LWREN                                             K+ G                     WVEVKGPGDSLSCAQEAWIDALVGAGAD  LLRVED  A GLP
Sbjct: 1176 RNLASNYWAWRHGLPDLLLWRENAAAEQAATAATSSCPMAGSSDQDASDFVADPDPAGSRATVSLNNDKKNGGDRMASTADIEVLPNRDARCKWVEVKGPGDSLSCAQEAWIDALVGAGADVALLRVEDDAATGLP 1311          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A654GY40_9CEST (Fanconi-associated nuclease n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GY40_9CEST)

HSP 1 Score: 74.3 bits (181), Expect = 7.680e-14
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 RNLASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRV 189
            R LA++Y  W+ GLPDL LW  ++ +  L VEVKGPGDSLSC Q  WID L+  GAD VL  V
Sbjct: 1152 RLLATDYRNWQSGLPDLCLWSPSQSKAKL-VEVKGPGDSLSCQQMVWIDKLISFGADVVLCTV 1213          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A7M3RA64_SPIER (Fanconi-associated nuclease n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RA64_SPIER)

HSP 1 Score: 71.2 bits (173), Expect = 8.040e-13
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   10 ASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRV 189
            A++Y  W+ GLPDL LW  +  +  L VEVKGPGDSLSC Q  WID L+  GAD VL  V
Sbjct:  314 ATDYRNWQSGLPDLCLWSPSHSKAKL-VEVKGPGDSLSCQQMVWIDKLISFGADVVLCTV 372          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A0X3PIH6_SCHSO (Fanconi-associated nuclease n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PIH6_SCHSO)

HSP 1 Score: 70.5 bits (171), Expect = 1.650e-12
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 RNLASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRV 189
            R L+++Y  W  G+PDL LW  ++ +  L VEVKGPGDSLSC Q  WID L+  GAD VL  V
Sbjct:  369 RLLSTDYRNWHSGMPDLCLWSPSRLKAKL-VEVKGPGDSLSCQQMVWIDKLLSFGADVVLCAV 430          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A7S4URG2_GUITH (Fanconi-associated nuclease n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4URG2_GUITH)

HSP 1 Score: 70.1 bits (170), Expect = 1.850e-12
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   10 ASNYWAWRHGLPDLFLWRENKEQ--GSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRVE 192
            A ++  WRHGLPDL  W E K+    SL VEVKGPGDSLS AQ AWI  L+ AGA   +  VE
Sbjct:  282 ARDFQTWRHGLPDLIFWDEAKDAKCSSLLVEVKGPGDSLSNAQIAWIHELLEAGAHVEVCHVE 344          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: L1JS68_GUITC (Fanconi-associated nuclease n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JS68_GUITC)

HSP 1 Score: 70.1 bits (170), Expect = 2.360e-12
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   10 ASNYWAWRHGLPDLFLWRENKEQ--GSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRVE 192
            A ++  WRHGLPDL  W E K+    SL VEVKGPGDSLS AQ AWI  L+ AGA   +  VE
Sbjct:  782 ARDFQTWRHGLPDLIFWDEAKDAKCSSLLVEVKGPGDSLSNAQIAWIHELLEAGAHVEVCHVE 844          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A7S2WA52_9STRA (Fanconi-associated nuclease n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WA52_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.540e-11
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   10 ASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRVEDAAGL 207
              NY  W  GLPDL +W+      + +VEVKGPGDSLS  Q+AWID L    AD  +  VE  +GL
Sbjct:  786 CENYKCWLGGLPDLIVWKTEGAPHTKFVEVKGPGDSLSDRQKAWIDKLCSVDADIEICLVEVGSGL 851          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: A0A5K3EFZ4_MESCO (Fanconi-associated nuclease n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3EFZ4_MESCO)

HSP 1 Score: 63.2 bits (152), Expect = 6.440e-10
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 RNLASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDALVGAGADFVLLRV 189
            R L  +Y  W  GLPDL +W  +  +  L +EVKGPGD LSC Q  WID L+  GAD  L  V
Sbjct:  511 RLLVKDYRNWSSGLPDLCVWSPSVGKAKL-IEVKGPGDQLSCQQIVWIDQLLSFGADVELCTV 572          
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Match: UPI001CA97CE5 (fanconi-associated nuclease 1-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA97CE5)

HSP 1 Score: 62.8 bits (151), Expect = 8.900e-10
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    7 LASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDAL--VGAGADFVLLRVEDAAG 204
            LA+N+  WR G PDLF+W     +  + VEVKGPGDSLSC Q+ W+  L  +G  A+  +++ +  +G
Sbjct:  769 LATNFLLWRSGFPDLFVWNPLSNECKI-VEVKGPGDSLSCKQKLWLQYLQQIGLRAEVCIVKDKKKSG 835          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2077.6274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL1_ECTSI9.550e-2645.99Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNP8_9PHAE3.540e-2345.59Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A654GY40_9CEST7.680e-1457.14Fanconi-associated nuclease n=1 Tax=Sparganum prol... [more]
A0A7M3RA64_SPIER8.040e-1356.67Fanconi-associated nuclease n=1 Tax=Spirometra eri... [more]
A0A0X3PIH6_SCHSO1.650e-1253.97Fanconi-associated nuclease n=2 Tax=Schistocephalu... [more]
A0A7S4URG2_GUITH1.850e-1257.14Fanconi-associated nuclease n=1 Tax=Guillardia the... [more]
L1JS68_GUITC2.360e-1257.14Fanconi-associated nuclease n=1 Tax=Guillardia the... [more]
A0A7S2WA52_9STRA1.540e-1148.48Fanconi-associated nuclease n=1 Tax=labyrinthulid ... [more]
A0A5K3EFZ4_MESCO6.440e-1049.21Fanconi-associated nuclease n=1 Tax=Mesocestoides ... [more]
UPI001CA97CE58.900e-1042.65fanconi-associated nuclease 1-like n=1 Tax=Leptopi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2077contigL-elsbetiae_contig2077:20865..21341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.6e-21
Seed eggNOG ortholog2880.D7FLL1
KEGG koko:K15363
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
EC3.1.4.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.6275454-CDS-L-elsbetiae_contig2077:20864..210141622815853.6275454-CDS-L-elsbetiae_contig2077:20864..21014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 20865..21014 -
1691683147.3064191-CDS-L-elsbetiae_contig2077:20864..210141691683147.3064191-CDS-L-elsbetiae_contig2077:20864..21014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 20865..21014 -
1622815853.640929-CDS-L-elsbetiae_contig2077:21272..213411622815853.640929-CDS-L-elsbetiae_contig2077:21272..21341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 21273..21341 -
1691683147.3167021-CDS-L-elsbetiae_contig2077:21272..213411691683147.3167021-CDS-L-elsbetiae_contig2077:21272..21341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2077 21273..21341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2077.6274.1prot_L-elsbetiae_contig2077.6274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2077 20865..21341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2077.6274.1

>prot_L-elsbetiae_contig2077.6274.1 ID=prot_L-elsbetiae_contig2077.6274.1|Name=mRNA_L-elsbetiae_contig2077.6274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
RNLASNYWAWRHGLPDLFLWRENKEQGSLWVEVKGPGDSLSCAQEAWIDA
LVGAGADFVLLRVEDAAGLPPR*
back to top

mRNA from alignment at L-elsbetiae_contig2077:20865..21341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2077.6274.1 ID=mRNA_L-elsbetiae_contig2077.6274.1|Name=mRNA_L-elsbetiae_contig2077.6274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=477bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:20865..21341- (Laminarionema elsbetiae ELsaHSoW15)
AGGAACCTGGCCTCGAACTACTGGGCGTGGAGGCACGGCCTTCCAGACCT GTTCCTCTGGCGCGAGAATGTTAAGGCCGCCACCAATGCGAACGCCCCCG CCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAACA GCAGCAGCAGTCCACTTCGAGAGCCCGCCAGCTCGCGACGCCGCGGGCAC ATTGGCCACGGAGACGAAACCGTCGGAGGCCGTTTTTGTTGCTGGCAGTA GTGCATCGGCCTCGGATGGGGGCTACTATGGTGGTGGAGATGGGGACAAC AGTGGTAAGGCGCCGGGGGGGGCCAAGAAAGAGCAGGGTAGCTTGTGGGT CGAGGTTAAGGGGCCCGGGGATAGTCTAAGCTGCGCGCAGGAGGCGTGGA TCGACGCGCTGGTCGGGGCCGGCGCGGATTTCGTTCTGCTCCGGGTTGAA GATGCGGCAGGGTTGCCGCCGAGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2077:20865..21341-

>mRNA_L-elsbetiae_contig2077.6274.1 ID=mRNA_L-elsbetiae_contig2077.6274.1|Name=mRNA_L-elsbetiae_contig2077.6274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig2077:20865..21341- (Laminarionema elsbetiae ELsaHSoW15)
AGGAACCTGGCCTCGAACTACTGGGCGTGGAGGCACGGCCTTCCAGACCT
GTTCCTCTGGCGCGAGAATAGGAACCTGGCCTCGAACTACTGGGCGTGGA
GGCACGGCCTTCCAGACCTGTTCCTCTGGCGCGAGAATAAAGAGCAGGGT
AGCTTGTGGGTCGAGGTTAAGGGGCCCGGGGATAGTCTAAGCTGCGCGCA
GGAGGCGTGGATCGACGCGCTGGTCGGGGCCGGCGCGGATTTCGTTCTGC
TCCGGGTTGAAGATGCGGCAGGGTTGCCGCCGAGATGAAAAGAGCAGGGT
AGCTTGTGGGTCGAGGTTAAGGGGCCCGGGGATAGTCTAAGCTGCGCGCA
GGAGGCGTGGATCGACGCGCTGGTCGGGGCCGGCGCGGATTTCGTTCTGC
TCCGGGTTGAAGATGCGGCAGGGTTGCCGCCGAGATGA
back to top