mRNA_L-elsbetiae_contig20757.6265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20757.6265.1
Unique NamemRNA_L-elsbetiae_contig20757.6265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5K4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.320e-18
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSEV 245
             L  + +TT  +GK+R V +D++RGRDPVDK +L  TIERGW+ RK  +LKEE DA  +TGEGTM+ EE ++MQAKDSE 
Sbjct:   45 FLVPKEITTWSEGKSRKVRVDFQRGRDPVDKHKLRDTIERGWNKRKNAYLKEEKDAGKQTGEGTMTAEEANEMQAKDSEA 124
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5JAQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-16
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSEV 245
             +EAQT+TT ++G  +D+++DY+R RDPVDK +LA TIERGW+ R+    KEE  A   TGEGTM+ EEES++ A+DSE 
Sbjct:  178 FIEAQTLTTFRNGVRQDLHLDYQRNRDPVDKAKLADTIERGWNRRRNAIEKEERGAAKLTGEGTMTQEEESELYARDSEA 257
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5JVC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.150e-16
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSEV 245
             +EAQT+TT ++G  +D+++DY+R RDPVDK +LA TIERGW+ R     KEE  A   TGEGTM+ EEES++ A+DSE 
Sbjct:  178 FMEAQTLTTFRNGVRQDLHLDYQRNRDPVDKAKLADTIERGWNCRSNALEKEERGAAKLTGEGTMTQEEESELYARDSEA 257
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5KKC1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.680e-15
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGR-------------------DPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSEVGGW 254
             +EAQT+TT ++G  +D+++DY+R R                   DPVDK +LA TIERGW+ R+    KEE  A   TGEGTM+ EEES++ A+DSEV GW
Sbjct:  173 FIEAQTLTTFRNGVRQDLHLDYQRNREEXPPFSHPLPLVHAPKLQDPVDKAKLADTIERGWNRRRNAIEKEERGAAKLTGEGTMTQEEESELYARDSEVRGW 274
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5KDX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.700e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSE 242
             LE Q M+  + GK+RDV++DY+R R PVD  +LA +IERGW+  K  FL  E  A  KTGEGTM+ E+ES+M A +SE
Sbjct:   75 FLEPQQMSINRKGKSRDVFVDYQRNRPPVDMVKLAQSIERGWNRAKAAFLANEQAASKKTGEGTMTAEQESEMIADNSE 153
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5KSW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.340e-12
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDAQAKTGEGTMSPEEESQMQAKDSEVGGWMDEKVILAFLARKRRRNKAFS 317
             LE Q M   + GKTRDV++DY+R R PVDK +LA +I+R W+  K  FL  +  A  KTGEGTM+ E+ES++ A +SE     D  ++L+ L ++  + KA +
Sbjct:   39 FLEPQQMYITRKGKTRDVFVDYQRNRPPVDKVKLAQSIKRVWNRAKAAFLANKQAASKKTGEGTMTAEQESEILANNSE-----DYHLMLSILYQQAAKEKAMA 137
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BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Match: A0A6H5KB25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB25_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.690e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:    6 ILEAQTMTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEE 164
             LE Q M+  + GK+RDV++DY+R R PVDK +LA +IERGW+  K  FL  E
Sbjct:  184 FLEPQQMSIIRKGKSRDVFVDYQRNRPPVDKVKLAQSIERGWNRAKAAFLANE 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20757.6265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K4E8_9PHAE2.320e-1857.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAQ8_9PHAE1.910e-1655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVC0_9PHAE3.150e-1655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKC1_9PHAE3.680e-1546.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KDX3_9PHAE6.700e-1453.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSW9_9PHAE5.340e-1243.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB25_9PHAE5.690e-752.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20757contigL-elsbetiae_contig20757:387..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size627
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20757.6265.1prot_L-elsbetiae_contig20757.6265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20757 410..1152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.9955797-UTR-L-elsbetiae_contig20757:386..4091622815852.9955797-UTR-L-elsbetiae_contig20757:386..409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20757 387..409 +
1691683146.9330797-UTR-L-elsbetiae_contig20757:386..4091691683146.9330797-UTR-L-elsbetiae_contig20757:386..409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20757 387..409 +
1622815853.033711-UTR-L-elsbetiae_contig20757:1152..13961622815853.033711-UTR-L-elsbetiae_contig20757:1152..1396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20757 1153..1396 +
1691683146.9595811-UTR-L-elsbetiae_contig20757:1152..13961691683146.9595811-UTR-L-elsbetiae_contig20757:1152..1396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20757 1153..1396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.0090435-CDS-L-elsbetiae_contig20757:409..4691622815853.0090435-CDS-L-elsbetiae_contig20757:409..469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20757 410..469 +
1691683146.9424691-CDS-L-elsbetiae_contig20757:409..4691691683146.9424691-CDS-L-elsbetiae_contig20757:409..469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20757 410..469 +
1622815853.019092-CDS-L-elsbetiae_contig20757:852..11521622815853.019092-CDS-L-elsbetiae_contig20757:852..1152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20757 853..1152 +
1691683146.9509463-CDS-L-elsbetiae_contig20757:852..11521691683146.9509463-CDS-L-elsbetiae_contig20757:852..1152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20757 853..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20757.6265.1

>prot_L-elsbetiae_contig20757.6265.1 ID=prot_L-elsbetiae_contig20757.6265.1|Name=mRNA_L-elsbetiae_contig20757.6265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MTTCKDGKTRDVYMDYERGRDPVDKKRLAATIERGWSSRKKNFLKEESDA
QAKTGEGTMSPEEESQMQAKDSEVGGWMDEKVILAFLARKRRRNKAFSRK
VVTQFPVRRCGQASRPKRQ*
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mRNA from alignment at L-elsbetiae_contig20757:387..1396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20757.6265.1 ID=mRNA_L-elsbetiae_contig20757.6265.1|Name=mRNA_L-elsbetiae_contig20757.6265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1010bp|location=Sequence derived from alignment at L-elsbetiae_contig20757:387..1396+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGATTCTCGAGGCTCAGACGATGACGACGTGCAAGGATGGGAAAACG
CGCGACGTGTACATGGACTACGAGCGCGGCCGTGTAAGAACCCGAAAGAA
CGTATGCTCGGTGCAAAGAGTTCTGTTTTCCAGGCATTGTGGTGGGGGGG
GGGGGCGCGAGACGGAGGTTGCGATGGCAGAGTAGCGAGCCATTCACCCG
GTCAAGGTGTACAGGGGGACCCGTGCGACGAAACGGAATTTAACGTATTC
AGGGGTCCACCCAGGCGGCCCCTGAAAGCCCGCAAGCAGTTTAGTGTAGC
CCAGCAGAGTCACCACCATTTTTCGTTGTCGATGCGTAGAGGTGTAAGGT
TTAGGAGTCTGTTTCAACGTACTCCGCTCCCCCGACCCCCCCCCCTAATT
TGCGCGTCTCCTTCCGCCCCCCCAACCCCCCCCCAACCGGCTATGTCGTC
TCCGTGAAATTCTCAGGACCCCGTGGACAAGAAACGGCTGGCGGCGACTA
TCGAGAGAGGATGGAGCAGCCGCAAGAAGAATTTCTTGAAGGAAGAGAGT
GACGCGCAGGCTAAGACTGGAGAAGGGACGATGTCCCCGGAAGAGGAGAG
CCAGATGCAGGCCAAGGACTCCGAGGTAGGTGGATGGATGGACGAGAAAG
TTATCCTGGCGTTCTTGGCGAGAAAGCGACGTCGAAATAAAGCCTTCAGT
AGAAAAGTCGTCACACAGTTTCCGGTACGGCGATGCGGCCAAGCCTCCCG
GCCGAAACGACAATAGTCTGTGTTCAAGCACGATGCGCCAAATCTATGAC
GTTTGTCGAAGGGTTGCATGTGGCAGTGGAGCACTGCAACACAGGGGGGC
GATGGGTGCGTGCGAACTGGCGGGAAGCTCACACGACGTCGTTACTTTCT
ACGCCCTTTCCCTTCGCTGCCTCGTCAGAAATACAACCTGATGCTATCCA
TCAGGTACCAGCAAGCAGCGAAGGAACATGCAATGCAGGGGGACCCCGTA
GCAAGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20757:387..1396+

>mRNA_L-elsbetiae_contig20757.6265.1 ID=mRNA_L-elsbetiae_contig20757.6265.1|Name=mRNA_L-elsbetiae_contig20757.6265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig20757:387..1396+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACGTGCAAGGATGGGAAAACGCGCGACGTGTACATGGACTACGA
GCGCGGCCGTATGACGACGTGCAAGGATGGGAAAACGCGCGACGTGTACA
TGGACTACGAGCGCGGCCGTGACCCCGTGGACAAGAAACGGCTGGCGGCG
ACTATCGAGAGAGGATGGAGCAGCCGCAAGAAGAATTTCTTGAAGGAAGA
GAGTGACGCGCAGGCTAAGACTGGAGAAGGGACGATGTCCCCGGAAGAGG
AGAGCCAGATGCAGGCCAAGGACTCCGAGGTAGGTGGATGGATGGACGAG
AAAGTTATCCTGGCGTTCTTGGCGAGAAAGCGACGTCGAAATAAAGCCTT
CAGTAGAAAAGTCGTCACACAGTTTCCGGTACGGCGATGCGGCCAAGCCT
CCCGGCCGAAACGACAATAGGACCCCGTGGACAAGAAACGGCTGGCGGCG
ACTATCGAGAGAGGATGGAGCAGCCGCAAGAAGAATTTCTTGAAGGAAGA
GAGTGACGCGCAGGCTAAGACTGGAGAAGGGACGATGTCCCCGGAAGAGG
AGAGCCAGATGCAGGCCAAGGACTCCGAGGTAGGTGGATGGATGGACGAG
AAAGTTATCCTGGCGTTCTTGGCGAGAAAGCGACGTCGAAATAAAGCCTT
CAGTAGAAAAGTCGTCACACAGTTTCCGGTACGGCGATGCGGCCAAGCCT
CCCGGCCGAAACGACAATAG
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