mRNA_L-elsbetiae_contig20755.6264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20755.6264.1
Unique NamemRNA_L-elsbetiae_contig20755.6264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20755.6264.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.690e-10
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:  151 TYKTFRNQACFDAARALNVRGAGVQVRRNKCFEKACQALWPGSDAIGESIAAGFS 315
            T K  RN+AC+DA  ALN RG GVQ+RR KCF  AC+A+WP    +  ++    S
Sbjct:  124 TTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDALS 178
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20755.6264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE5.690e-1049.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20755contigL-elsbetiae_contig20755:759..1989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.9478116-CDS-L-elsbetiae_contig20755:759..9241622815852.9478116-CDS-L-elsbetiae_contig20755:759..924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20755 760..924 -
1691683146.9105554-CDS-L-elsbetiae_contig20755:759..9241691683146.9105554-CDS-L-elsbetiae_contig20755:759..924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20755 760..924 -
1622815852.9605272-CDS-L-elsbetiae_contig20755:1815..19891622815852.9605272-CDS-L-elsbetiae_contig20755:1815..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20755 1816..1989 -
1691683146.9236572-CDS-L-elsbetiae_contig20755:1815..19891691683146.9236572-CDS-L-elsbetiae_contig20755:1815..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20755 1816..1989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20755.6264.1prot_L-elsbetiae_contig20755.6264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20755 760..1989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20755.6264.1

>prot_L-elsbetiae_contig20755.6264.1 ID=prot_L-elsbetiae_contig20755.6264.1|Name=mRNA_L-elsbetiae_contig20755.6264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
THTHSSSPTTQESMADDSYPLQIETAEQESDNSSIAVHVQLTAERRQQLA
TYKTFRNQACFDAARALNVRGAGVQVRRNKCFEKACQALWPGSDAIGESI
AAGFSADNVVPFV
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mRNA from alignment at L-elsbetiae_contig20755:759..1989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20755.6264.1 ID=mRNA_L-elsbetiae_contig20755.6264.1|Name=mRNA_L-elsbetiae_contig20755.6264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1231bp|location=Sequence derived from alignment at L-elsbetiae_contig20755:759..1989- (Laminarionema elsbetiae ELsaHSoW15)
ACACACACACACAGCAGCAGCCCTACCACACAAGAGAGCATGGCGGATGA
CTCGTACCCCCTCCAAATTGAGACGGCGGAACAGGAGAGCGACAACAGCA
GTATAGCTGTCCACGTCCAGCTCACTGCTGAACGCCGTCAGCAGCTAGCC
ACCTACAAGACTTTCAGGAACCAGGTGAGATTAGCGGGGATGGGGTGGGT
GAACGATGGCCATCGGTGGGCAGCGGGTAGCAGGCTCATGTTGGCATGCT
GTGTGCCTGCAACATGCAGCCCGTGTCTAAATTATGTATCTAATCGAGCG
ACCGAACCTCGCCTCTGCGGCCTCTTTTATCTGTCCCCACAAGTTGCCCC
ATGTACACAATTTCTTGCCTAAAGCTCGAGTTACGAGAAGCTGCGTAAAG
TGTGGTGCGCCCTCACACGGCGCTCATTGATTACTGCCGCGTCGATCGTG
GTGCTTGTTTATTTGGGTAAGGAAGCCTTGTCTGGTGGGAAATTTGAAAT
CGTGCACAGCATGCTAAAGTATGTAGATAGTTCTAGGACAGACCTGCACC
ACACCCCCTGAACGGATTTTGAATGGTCTTTTCCTCCCTAGCAAGAAGAG
TGCTGGTGCCAAAAGGGCGTGGCGTTGAAAATATGTAGTCAAACGCTGTC
CGAAAATGTGTTGTTTGATGTTGTCACGCTCTTCGTTACGGAGTAATGGG
ACTCTAAAACTCGGTCCACGGGGGGTATGGTATCTTGTGTACGGTGGAGC
CTCTAAAAATGTCTGTTCGGTGCGGTGTTGTTGTATGTACAAGTTGTTGG
TCGTAGTAGGATCTGCTGCTGTATTCAATTTGAAATCTGCGGTATATTTC
AGCAACACGATGCGCACTGCGCTTCTTGTCGCCGACACGCAGTACTGCTG
TAAATCGTCTCGGGGAGTTATCAAAGGTAGAGGCGATCTGTTTTTGAAAG
AAAAAAGAACACCCCAGGCGTGGTTTATCTACCTGCAAAAATGCTTGACC
ACACGAACAACTAGACTTCAAGACTTTCCCTCGTGAATCCACGTATATAT
GACACTTTTTCGCAGGCCTGCTTCGACGCCGCGCGCGCTCTAAACGTTCG
AGGTGCGGGGGTGCAAGTCCGCCGCAATAAATGCTTCGAGAAGGCTTGCC
AGGCGCTTTGGCCCGGGAGTGACGCGATCGGCGAGTCCATCGCGGCTGGG
TTCTCTGCTGACAACGTGGTGCCATTCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20755:759..1989-

>mRNA_L-elsbetiae_contig20755.6264.1 ID=mRNA_L-elsbetiae_contig20755.6264.1|Name=mRNA_L-elsbetiae_contig20755.6264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig20755:759..1989- (Laminarionema elsbetiae ELsaHSoW15)
ACACACACACACAGCAGCAGCCCTACCACACAAGAGAGCATGGCGGATGA
CTCGTACCCCCTCCAAATTGAGACGGCGGAACAGGAGAGCGACAACAGCA
GTATAGCTGTCCACGTCCAGCTCACTGCTGAACGCCGTCAGCAGCTAGCC
ACCTACAAGACTTTCAGGAACCAGACACACACACACAGCAGCAGCCCTAC
CACACAAGAGAGCATGGCGGATGACTCGTACCCCCTCCAAATTGAGACGG
CGGAACAGGAGAGCGACAACAGCAGTATAGCTGTCCACGTCCAGCTCACT
GCTGAACGCCGTCAGCAGCTAGCCACCTACAAGACTTTCAGGAACCAGGC
CTGCTTCGACGCCGCGCGCGCTCTAAACGTTCGAGGTGCGGGGGTGCAAG
TCCGCCGCAATAAATGCTTCGAGAAGGCTTGCCAGGCGCTTTGGCCCGGG
AGTGACGCGATCGGCGAGTCCATCGCGGCTGGGTTCTCTGCTGACAACGT
GGTGCCATTCGTGGCCTGCTTCGACGCCGCGCGCGCTCTAAACGTTCGAG
GTGCGGGGGTGCAAGTCCGCCGCAATAAATGCTTCGAGAAGGCTTGCCAG
GCGCTTTGGCCCGGGAGTGACGCGATCGGCGAGTCCATCGCGGCTGGGTT
CTCTGCTGACAACGTGGTGCCATTCGTG
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