mRNA_L-elsbetiae_contig2075.6262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2075.6262.1
Unique NamemRNA_L-elsbetiae_contig2075.6262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2075.6262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2075contigL-elsbetiae_contig2075:15803..16301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.551909-UTR-L-elsbetiae_contig2075:15802..160011622815852.551909-UTR-L-elsbetiae_contig2075:15802..16001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 15803..16001 +
1691683146.6551006-UTR-L-elsbetiae_contig2075:15802..160011691683146.6551006-UTR-L-elsbetiae_contig2075:15802..16001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2075 15803..16001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.564708-CDS-L-elsbetiae_contig2075:16001..163011622815852.564708-CDS-L-elsbetiae_contig2075:16001..16301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 16002..16301 +
1691683146.6648974-CDS-L-elsbetiae_contig2075:16001..163011691683146.6648974-CDS-L-elsbetiae_contig2075:16001..16301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2075 16002..16301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2075.6262.1prot_L-elsbetiae_contig2075.6262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2075 16002..16301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2075.6262.1

>prot_L-elsbetiae_contig2075.6262.1 ID=prot_L-elsbetiae_contig2075.6262.1|Name=mRNA_L-elsbetiae_contig2075.6262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MSACRRPDSNVCSALSSEYFLSLRCLWISNNSASLPKNQPRTLATAGVLL
PFATSRFRSSALSRYGVQSACSVPRRYTATTERHNLMIGPFCPYTTQQVP
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mRNA from alignment at L-elsbetiae_contig2075:15803..16301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2075.6262.1 ID=mRNA_L-elsbetiae_contig2075.6262.1|Name=mRNA_L-elsbetiae_contig2075.6262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=499bp|location=Sequence derived from alignment at L-elsbetiae_contig2075:15803..16301+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGAGAGGGTTTTCCTTGGCAACGGTAGGTAGTGTTTGCTGCCGTTCG
GCTTCTCGAACTGTCTCGGGTTGTTGCTTTCTCTCCGCTTGAGTTCGTTG
GAGGGTCGGGCAAAGGATATTTGCGGAGACGGCACGCGCGGTGATACGCA
TTCTTCAGGCCGTTGCTAACTGTAACCCAAGAGAAGGGTCACATGTTGAA
TGTCGGCTTGCCGCAGGCCAGATTCAAATGTCTGCAGTGCTTTGTCCTCG
GAATATTTTTTGTCGCTGAGGTGTTTGTGGATATCAAATAACTCTGCGTC
TCTACCTAAAAATCAGCCGCGTACGCTAGCAACAGCGGGTGTGCTGCTGC
CATTCGCAACGTCTCGTTTTCGTTCGAGCGCCCTGTCTAGATACGGCGTT
CAGAGTGCTTGCAGCGTGCCCCGCCGGTACACAGCAACCACCGAGAGGCA
TAATCTGATGATCGGCCCCTTTTGTCCGTACACCACGCAGCAAGTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2075:15803..16301+

>mRNA_L-elsbetiae_contig2075.6262.1 ID=mRNA_L-elsbetiae_contig2075.6262.1|Name=mRNA_L-elsbetiae_contig2075.6262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig2075:15803..16301+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCTTGCCGCAGGCCAGATTCAAATGTCTGCAGTGCTTTGTCCTC
GGAATATTTTTTGTCGCTGAGGTGTTTGTGGATATCAAATAACTCTGCGT
CTCTACCTAAAAATCAGCCGCGTACGCTAGCAACAGCGGGTGTGCTGCTG
CCATTCGCAACGTCTCGTTTTCGTTCGAGCGCCCTGTCTAGATACGGCGT
TCAGAGTGCTTGCAGCGTGCCCCGCCGGTACACAGCAACCACCGAGAGGC
ATAATCTGATGATCGGCCCCTTTTGTCCGTACACCACGCAGCAAGTGCCG
ATGTCGGCTTGCCGCAGGCCAGATTCAAATGTCTGCAGTGCTTTGTCCTC
GGAATATTTTTTGTCGCTGAGGTGTTTGTGGATATCAAATAACTCTGCGT
CTCTACCTAAAAATCAGCCGCGTACGCTAGCAACAGCGGGTGTGCTGCTG
CCATTCGCAACGTCTCGTTTTCGTTCGAGCGCCCTGTCTAGATACGGCGT
TCAGAGTGCTTGCAGCGTGCCCCGCCGGTACACAGCAACCACCGAGAGGC
ATAATCTGATGATCGGCCCCTTTTGTCCGTACACCACGCAGCAAGTGCCG
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