mRNA_L-elsbetiae_contig2074.6254.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2074.6254.1
Unique NamemRNA_L-elsbetiae_contig2074.6254.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2074.6254.1 vs. uniprot
Match: D7FJD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD1_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 7.090e-16
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  208 TSITGAWVLDLSRSETLQGYLLCLGTPEAAVNAQVAVERAHQSRNVIALNESTLVIHKSTAVHQYTE 408
            +S+TGAWVLD+ RS+TL+ YL C+G P+  V AQ+A E+A  SRNV+ L++S LV+HK T+V+  TE
Sbjct:    4 SSLTGAWVLDVYRSDTLEAYLRCMGAPDRVVEAQLAGEQACPSRNVLVLDDSRLVVHKHTSVNNLTE 70
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BLAST of mRNA_L-elsbetiae_contig2074.6254.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.180e-14
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  211 SITGAWVLDLSRSETLQGYLLCLGTPEAAVNAQVAVERAHQSRNVIALNESTLVIHKSTAVHQYTE 408
            SI GAWVL++SRSET++GYL C+   + A+ AQ+  E+ H+SRNV A+  + LVIHK T ++ +T+
Sbjct:   23 SIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQ 88
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BLAST of mRNA_L-elsbetiae_contig2074.6254.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.070e-10
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  211 SITGAWVLDLSRSETLQGYLLCLGTPEAAVNAQVAVERAHQSRNVIALNESTLVIHKSTAVHQYTEQ 411
            SI GAWVLDLSRS+T++ +L   G PE  +   V+ E  H   NV+ L E T+ IHK T  + YTE+
Sbjct:  117 SIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTER 183
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BLAST of mRNA_L-elsbetiae_contig2074.6254.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.850e-7
Identity = 31/76 (40.79%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:  181 MLSQEQTAETSITGAWVLDLSRSETLQGYLLCLGTPEAAVNAQVAVERAHQSRNVIALNESTLVIHKSTAVHQYTE 408
            M  Q      SI GAWVLDLSRS+T++ +L      E    A V  E  H + NVI L   T+ IH+ T  + +TE
Sbjct:    1 MEEQRHGGLNSIVGAWVLDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTE 76
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2074.6254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJD1_ECTSI7.090e-1655.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQR1_ECTSI3.180e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G874_ECTSI8.070e-1047.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G875_ECTSI1.850e-740.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2074contigL-elsbetiae_contig2074:2547..4501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size604
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2074.6254.1prot_L-elsbetiae_contig2074.6254.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2074 2922..4311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.2976246-UTR-L-elsbetiae_contig2074:2546..26661622815852.2976246-UTR-L-elsbetiae_contig2074:2546..2666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 2547..2666 +
1691683146.5333612-UTR-L-elsbetiae_contig2074:2546..26661691683146.5333612-UTR-L-elsbetiae_contig2074:2546..2666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 2547..2666 +
1622815852.3119128-UTR-L-elsbetiae_contig2074:2861..29211622815852.3119128-UTR-L-elsbetiae_contig2074:2861..2921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 2862..2921 +
1691683146.5432925-UTR-L-elsbetiae_contig2074:2861..29211691683146.5432925-UTR-L-elsbetiae_contig2074:2861..2921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 2862..2921 +
1622815852.3611586-UTR-L-elsbetiae_contig2074:4311..45011622815852.3611586-UTR-L-elsbetiae_contig2074:4311..4501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 4312..4501 +
1691683146.5827994-UTR-L-elsbetiae_contig2074:4311..45011691683146.5827994-UTR-L-elsbetiae_contig2074:4311..4501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2074 4312..4501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.325784-CDS-L-elsbetiae_contig2074:2921..29861622815852.325784-CDS-L-elsbetiae_contig2074:2921..2986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 2922..2986 +
1691683146.5522618-CDS-L-elsbetiae_contig2074:2921..29861691683146.5522618-CDS-L-elsbetiae_contig2074:2921..2986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 2922..2986 +
1622815852.33742-CDS-L-elsbetiae_contig2074:3705..37691622815852.33742-CDS-L-elsbetiae_contig2074:3705..3769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 3706..3769 +
1691683146.5607202-CDS-L-elsbetiae_contig2074:3705..37691691683146.5607202-CDS-L-elsbetiae_contig2074:3705..3769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 3706..3769 +
1622815852.348397-CDS-L-elsbetiae_contig2074:4206..43111622815852.348397-CDS-L-elsbetiae_contig2074:4206..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 4207..4311 +
1691683146.5723603-CDS-L-elsbetiae_contig2074:4206..43111691683146.5723603-CDS-L-elsbetiae_contig2074:4206..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2074 4207..4311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2074.6254.1

>prot_L-elsbetiae_contig2074.6254.1 ID=prot_L-elsbetiae_contig2074.6254.1|Name=mRNA_L-elsbetiae_contig2074.6254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MLSQEQTAETSITGAWVLDLSRSETLQGYLLCLGTPEAAVNAQVAVERAH
QSRNVIALNESTLVIHKSTAVHQYTEQ*
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mRNA from alignment at L-elsbetiae_contig2074:2547..4501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2074.6254.1 ID=mRNA_L-elsbetiae_contig2074.6254.1|Name=mRNA_L-elsbetiae_contig2074.6254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1955bp|location=Sequence derived from alignment at L-elsbetiae_contig2074:2547..4501+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATATATATGATGAAGAAGACCGCCGTCCTGGGCTAACGTAGTCCC
CAGTCTCCACACCAACCGCAGTGCAGTGCGGTGGCGCACTCGAACATAGT
ATTTACATAATACAACACCTGTGAGTCGTCCTTCTCATCATATTTTTGGG
CAAAAAGCATAGCATTACTATTTATATATCTAAACCACTGGAGGGTTATG
TGGCGATTTTTAATATCAATGTCTCCCCCGTCAGATTCACTAAGCTCTCC
ATCTGACCCTTTGATTGCTTGTGGTTGGGGTTTTACCCTCACCACCCTCC
TCGCCCATCCGTCAGAAACTACAGCTGCACGTGCTGCCTGCTCGAAGAAG
GCACCCGGCATCCGATACCGAGGCAATGTTGAGTCAAGAGCAAACCGCAG
AAACCTCTATCACCGGGGCTTGGGTTCTGGATTTGTCCCGGTGAGTTCAT
GTTTTGCCGAGAAGCATCCGTAGTTATGGGCGCCACTTCGGCCGATGGCG
GTGGATTTCATATACTAAACTCATGCAAAAGCTCTCTTGGAACCCGCGTG
GAGGTTCTGTGTGAATGCAGCTACTTTGCTGCACGCACTTCTAAGAAACG
GTTCACAGGTGGATGCCAGCACACGTTGCACTAGAATCAACGAGTATAAT
GTGCGTCCGCCCCCCAAGCTTGGCCGCAAGAAGCGAGAGAGGCAGACAGA
CGAGCAGCTGGGATGGGTTCTTCCGCGCGCTTTTGAACACGTCGACGAGA
GCATTAAACTTTTCCCGCCATCACGGTTAACTCCTCTGAATAAGGTTCAC
ATTTCTCGGTGACCTTGGTGAACTTTTAAACAAGTTCTCATGACATGTCT
ATGATCACCAATGTACAACACATTGTCACACGCATTTCAAGGGGGGGGGG
GTGTTCTTACCGACGCCATCTATGTGTTGTTTCAACTGATTGCCGATGCC
CGAAACAATGAAAGATTATCATTTACATTGTACGACCCGACCGCAAGAGT
GCTGCCGTCCACCTTTCTTTGTAGTCATGCACAGGAACGTGCGCTTGCCA
AACCGCATGATGCACCTGCATCAGCCTCACTACAAACTGCAAACGCTTTC
GCGTCGATACCGCCATGGCCCGCGTGCTGCTGTTTGCTTGTATGTCGTCT
TTGCTGCAGGTCGGAAACCTTGCAAGGCTACCTGCTATGCTTGGGCACTC
CAGAAGCTGCCGTTAACGCCCAGGCAAGTGGTTGGGTTGGTGCAACGAAA
ATGAAGCGATACTCAACCGTCTTCCAATATGCCGTACCCAAGCGACCGAC
TACAGGGGTGCTTCAAAATGTCCAGAGCCCAATACCCAACAAGTGCTACG
CAGACAACTATTCCAGCGGTTCCTCTTCTCAGATCGATCGAGTGCGTTCC
AGCCATGTCGGTACGTATTCTAGCTCGAAAACTCGGTTCACAAACAACCG
TGGGACGCTGCCGTTGCGTGCATATTGTTCCGAAAGTTGCTGTGGTACTA
CTCAAACCTGCCACTGCTGCTGTAGTTCTATATTCAATTAAACGTTCCTG
GACTTTCGTGTTTCCGACTTATCTGTATGAAACTGCCGCAATAAGTGCGC
GGTTCGACTTCCGTGTACTGCTGCTGCTGTATCTGGTTCTTATTTGATGA
CTTTTTTCAGGTAGCTGTCGAGCGCGCGCACCAGAGCCGCAACGTGATCG
CGCTGAACGAGTCTACGCTGGTCATCCACAAGAGCACCGCCGTCCACCAG
TACACCGAACAGTGAGGATAAATCTCACACGCAGCTGAACCGCGACAAGC
TTTTGTCCCCCTACTTCGCGCCACCCTTATACCCCCACCCGGGTCTCGCG
ACGAACGTTCGTAGATACACGCACCTCGAGCACGTTAAACACGCAGGGGA
GAAGGACAGCCGATGGTGGCGGAGGCGCACGTTCTTCCTCGGGCCTCGGA
AAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2074:2547..4501+

>mRNA_L-elsbetiae_contig2074.6254.1 ID=mRNA_L-elsbetiae_contig2074.6254.1|Name=mRNA_L-elsbetiae_contig2074.6254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig2074:2547..4501+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAGTCAAGAGCAAACCGCAGAAACCTCTATCACCGGGGCTTGGGT
TCTGGATTTGTCCCGATGTTGAGTCAAGAGCAAACCGCAGAAACCTCTAT
CACCGGGGCTTGGGTTCTGGATTTGTCCCGGTCGGAAACCTTGCAAGGCT
ACCTGCTATGCTTGGGCACTCCAGAAGCTGCCGTTAACGCCCAGGTCGGA
AACCTTGCAAGGCTACCTGCTATGCTTGGGCACTCCAGAAGCTGCCGTTA
ACGCCCAGGTAGCTGTCGAGCGCGCGCACCAGAGCCGCAACGTGATCGCG
CTGAACGAGTCTACGCTGGTCATCCACAAGAGCACCGCCGTCCACCAGTA
CACCGAACAGTGAGTAGCTGTCGAGCGCGCGCACCAGAGCCGCAACGTGA
TCGCGCTGAACGAGTCTACGCTGGTCATCCACAAGAGCACCGCCGTCCAC
CAGTACACCGAACAGTGA
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