mRNA_L-elsbetiae_contig207.6240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig207.6240.1
Unique NamemRNA_L-elsbetiae_contig207.6240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: D7FHS6_ECTSI (Heat shock protein 40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS6_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.330e-49
Identity = 85/140 (60.71%), Postives = 94/140 (67.14%), Query Frame = 1 
Query:    4 PVMEEPELSYEDAPFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGYAYHLFGAHESNNXXXXXXX--------------PGDRCSRHEDGR 381
            P  EEPE  Y+DAPF IF+RFGGGRGG  F YKGHG RRAPD ++A+P+TFEEAF GK ANVTV R+RLC TC GTGA++P EMPTC LCEGKGYAYHLF  HES                       P  RCS H DGR
Sbjct:  128 PGEEEPEERYQDAPFGIFIRFGGGRGGLSFRYKGHGKRRAPDLMVALPVTFEEAFEGKTANVTVARERLCRTCGGTGASEPGEMPTCNLCEGKGYAYHLFAVHESGTQSDHHSHGDRHXXXDDASSGNPRGRCSEHLDGR 267
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A261Y2A0_9FUNG (Cysteine dioxygenase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2A0_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.320e-13
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   43 PFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKG 285
            PFDIF +F GG G F     GH  R+  D  +A+ +T E+ +SG    + V++Q +C  C+GTGA  P+++ TCP C+G+G
Sbjct:  485 PFDIFAQFFGGGGHF-----GHQERKGKDLQLALEVTLEDLYSGTTIEIDVSKQVICDHCRGTGAEDPDDIETCPTCQGRG 560
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A433DN51_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DN51_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 6.080e-13
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   43 PFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKG 285
            PFDIF +F GG G F+   K    R+ PD ++ + +T EE + G   +V V++Q  C  C+GTGA  PE++ TCP+C+G G
Sbjct:  104 PFDIFGQFFGGGGHFQ---KNQQERKGPDLLVDLDVTLEELYLGTDIDVDVSKQVYCDHCRGTGAKNPEDVKTCPVCQGSG 181
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A7S2SQR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQR9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-10
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  184 NVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGYAYHLFG--AHESN 321
            NVTV+RQRLC TCKGTG++ P+++PTC +C G+G   HL    AH+S+
Sbjct:    1 NVTVSRQRLCPTCKGTGSSTPDDLPTCHMCNGRGVRLHLHEELAHQSS 48
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A124FN37_9CHLR (Chaperone protein DnaJ n=2 Tax=Anaerolineaceae TaxID=292628 RepID=A0A124FN37_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 2.050e-8
Identity = 32/81 (39.51%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:   43 PFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKG 285
            PF+IF +F G  G      +    RR  D V  + + FEEAF G    +++TR  LCH CKGTG+       TC  C G G
Sbjct:   88 PFEIFEQFFGFGGMSGNTRRRSSPRRGEDLVTTVTLDFEEAFFGVDKEISITRDELCHVCKGTGSEPGTSTKTCATCGGHG 168
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: R7QBM7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBM7_CHOCR)

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-8
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   49 DIF-VRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKG 285
            D+F   FGGG    R      G R+  + V ++ +T E+ + GK++ + + R R+C TC G GA++PE + TC  C G+G
Sbjct:   91 DLFSAMFGGGAHSHR------GPRKGDNVVHSLRVTLEDLYKGKMSKLAIIRNRVCQTCNGIGASRPEGVSTCSTCHGRG 164
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A2V3IXD4_9FLOR (Chaperone protein dnaJ 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXD4_9FLOR)

HSP 1 Score: 60.5 bits (145), Expect = 3.990e-8
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  103 GHGMRRAPD----TVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKG 285
            G GM R P      V ++ +T E+ + GK + + + R R+C TC G GA++P+ + TCP+C+G+G
Sbjct:  111 GGGMSRGPKKGEPVVHSLRVTLEDLYKGKTSKLAIIRNRVCKTCDGIGASRPDAIQTCPVCQGRG 175
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: G0R1A2_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R1A2_ICHMG)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-7
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   19 PELSYEDAPFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGY 288
            P++ +    F  F  FGGG        K +  +R P+  I +  + E+ +SG      +T+Q LC  C+GTGA  P+++ TCP C G GY
Sbjct:  103 PDMDFFGGIFGNF--FGGGN-------KRNVEKRGPELKIKLYTSLEDIYSGNEVPFFITKQVLCPHCRGTGANDPDDVKTCPACNGGGY 183
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: A0A1D2VQS1_9ASCO (Uncharacterized protein n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VQS1_9ASCO)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-7
Identity = 31/85 (36.47%), Postives = 42/85 (49.41%), Query Frame = 1 
Query:   40 APFDIFVRFGGGRGGFR--FWYKGHGMRRAPDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGY 288
             P D F  F G  GG    F  +     +  D  + + +T E+ + GKV   T+TR  LCH+CKGTGA       TC  C G+G+
Sbjct:   74 TPEDFFNFFDGVNGGVPPGFQKQYQPPTKTDDAELNVKVTLEDLYRGKVIKFTITRDLLCHSCKGTGAKLKATPKTCSTCRGEGF 158
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BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DNJA1_DICDI)

HSP 1 Score: 56.6 bits (135), Expect = 9.040e-7
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:  103 GHGMRR-APDTVIAMPMTFEEAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGYAY 294
            GH  RR   D    M  + EE ++GK+  ++++R  +C TCKG+G+ KP    TCP C G  Y +
Sbjct:  134 GHKKRRKGEDIEHEMNRSLEELYNGKLVKISISRDEVCKTCKGSGSNKPGVTTTCPTCNGSRYVF 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig207.6240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FHS6_ECTSI1.330e-4960.71Heat shock protein 40 n=1 Tax=Ectocarpus siliculos... [more]
A0A261Y2A0_9FUNG1.320e-1341.98Cysteine dioxygenase n=1 Tax=Bifiguratus adelaidae... [more]
A0A433DN51_9FUNG6.080e-1343.21Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
A0A7S2SQR9_9STRA3.380e-1056.25Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A124FN37_9CHLR2.050e-839.51Chaperone protein DnaJ n=2 Tax=Anaerolineaceae Tax... [more]
R7QBM7_CHOCR2.900e-836.25Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IXD4_9FLOR3.990e-838.46Chaperone protein dnaJ 2 n=1 Tax=Gracilariopsis ch... [more]
G0R1A2_ICHMG2.470e-734.44Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
A0A1D2VQS1_9ASCO3.430e-736.47Uncharacterized protein n=1 Tax=Ascoidea rubescens... [more]
DNJA1_DICDI9.040e-738.46DnaJ homolog subfamily A member 1 homolog n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig207contigL-elsbetiae_contig207:42485..43881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.5
Seed ortholog evalue6.4e-10
Seed eggNOG ortholog109760.SPPG_08839T0
Preferred nameSCJ1
KEGG koko:K14002
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0030544,GO:0031072,GO:0031974,GO:0033554,GO:0034620,GO:0034975,GO:0034976,GO:0035966,GO:0035967,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051087,GO:0051603,GO:0051716,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.DnaJ domain-containing protein
EggNOG OGs38GG3@33154,3NU15@4751,COG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-07_006620.1
Exons3
Model size387
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig207.6240.1prot_L-elsbetiae_contig207.6240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig207 42494..43881 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.3427243-UTR-L-elsbetiae_contig207:42484..424931622815851.3427243-UTR-L-elsbetiae_contig207:42484..42493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig207 42485..42493 +
1691683145.9512997-UTR-L-elsbetiae_contig207:42484..424931691683145.9512997-UTR-L-elsbetiae_contig207:42484..42493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig207 42485..42493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815851.3563306-CDS-L-elsbetiae_contig207:42493..425921622815851.3563306-CDS-L-elsbetiae_contig207:42493..42592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 42494..42592 +
1691683145.9654477-CDS-L-elsbetiae_contig207:42493..425921691683145.9654477-CDS-L-elsbetiae_contig207:42493..42592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 42494..42592 +
1622815851.3663154-CDS-L-elsbetiae_contig207:43235..433881622815851.3663154-CDS-L-elsbetiae_contig207:43235..43388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 43236..43388 +
1691683145.9764473-CDS-L-elsbetiae_contig207:43235..433881691683145.9764473-CDS-L-elsbetiae_contig207:43235..43388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 43236..43388 +
1622815851.376257-CDS-L-elsbetiae_contig207:43755..438811622815851.376257-CDS-L-elsbetiae_contig207:43755..43881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 43756..43881 +
1691683145.990629-CDS-L-elsbetiae_contig207:43755..438811691683145.990629-CDS-L-elsbetiae_contig207:43755..43881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 43756..43881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig207.6240.1

>prot_L-elsbetiae_contig207.6240.1 ID=prot_L-elsbetiae_contig207.6240.1|Name=mRNA_L-elsbetiae_contig207.6240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MEEPELSYEDAPFDIFVRFGGGRGGFRFWYKGHGMRRAPDTVIAMPMTFE
EAFSGKVANVTVTRQRLCHTCKGTGAAKPEEMPTCPLCEGKGYAYHLFGA
HESNNHNHHHHHPGDRCSRHEDGRGG
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mRNA from alignment at L-elsbetiae_contig207:42485..43881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig207.6240.1 ID=mRNA_L-elsbetiae_contig207.6240.1|Name=mRNA_L-elsbetiae_contig207.6240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1397bp|location=Sequence derived from alignment at L-elsbetiae_contig207:42485..43881+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCGGTGATGGAAGAACCGGAACTGAGTTATGAGGACGCCCCGTTCGA
TATCTTCGTTCGCTTCGGGGGTGGCAGGGGGGGATTCCGGTTCTGGTATA
AGGGTCATGTGAGGCACTTTACTTTCCCTATGATGTCCGAATAAGTGGGG
TTCGTACTACGTGTATGTGTAGAGTACTAGCTGTTGCTCAAACTGCGCTT
TGAAAGTCGGGTCGATCATTTCGATCTAATGCAAACCCACCGCCGCAGTT
GCCAATCGGTGTATGGTTGGTTCTCCTGGGCCATTTTCAAGTCTGCACCA
TACCCATGGAAGGTCCACATACTTTCATTCGAACGAGGTTGACCCACATG
AACCCGCTGTATTTTCAAACCGACTGTTGCGGCTCTCACACTATGTATGT
ATCTCTCTTTCGGAGGGGTTGAATAATAACCACTTGGACTCTTCGAAACC
CCGCCGCCGCCAAGCGATGGTGATACATACCTGAAGTGCTATATTGGCCC
TATTTCGATTCAGGGGGGCTCGAAACCTCGAGTGGCATTTCGAGCTCACC
ACCATCTTGGGCCAAAAGCGGGCAGAATAATCGGCCATCTTTATACGCCG
CCCCCCCAGTACGGCTGTCCACGACAACAAGTGTCGGCAACCAAACGTCT
CGTTGTTATTGGCGCGTAGCAGCAGCTCATGGGTGCTCTCTTCCGCTTCT
GCTAAGTGCCCTTTACCCTCGTGCTATTGTTTTGGTTTCTGGTCAACTCA
GGGCATGCGAAGAGCGCCAGACACCGTGATCGCGATGCCTATGACGTTCG
AGGAGGCATTCTCGGGGAAAGTGGCGAACGTAACCGTCACACGGCAGAGG
TTGTGCCACACTTGCAAGGGGACCGGCGCCGCCAAGCCAGAGGAAATGCC
CACGGTAAGAGCAGTCATTTGATAGACAGACAGAGCCCAAAACAATATTC
GATCATGCATGGCCCACGGAGCAGCTGCGAAAGCCGACTGTCACGGGTTG
GGCGTTGGAGCAGAGTGCTGAATGCAGGTATCTCGCGATGCTAAGGACCG
CTACCGCAGGCCGACTGGTCCGGTAGACCCTGACGCGATGTGCCCCGTGC
AACGACACCACCAATGTCACAACAAAAAAAGCCATTCAGACAACACAGAG
CGCACCAATACCGATACCGCGGCTCCATCTCGCCCTTCATCCCCCTCCAC
TCCACGGATTCCATTGGCATCAACTGGTGCTCCTATTCTCGTACTCGTAT
CTCGCGCTTTCCGCGTTGAAGTGCCCTTTGTGCGAGGGGAAGGGTTACGC
CTACCATCTGTTTGGCGCCCACGAGTCAAACAACCACAACCACCACCACC
ACCACCCGGGAGATCGCTGCTCAAGGCACGAAGACGGTCGCGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig207:42485..43881+

>mRNA_L-elsbetiae_contig207.6240.1 ID=mRNA_L-elsbetiae_contig207.6240.1|Name=mRNA_L-elsbetiae_contig207.6240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig207:42485..43881+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAACCGGAACTGAGTTATGAGGACGCCCCGTTCGATATCTTCGT
TCGCTTCGGGGGTGGCAGGGGGGGATTCCGGTTCTGGTATAAGGGTCATA
TGGAAGAACCGGAACTGAGTTATGAGGACGCCCCGTTCGATATCTTCGTT
CGCTTCGGGGGTGGCAGGGGGGGATTCCGGTTCTGGTATAAGGGTCATGG
CATGCGAAGAGCGCCAGACACCGTGATCGCGATGCCTATGACGTTCGAGG
AGGCATTCTCGGGGAAAGTGGCGAACGTAACCGTCACACGGCAGAGGTTG
TGCCACACTTGCAAGGGGACCGGCGCCGCCAAGCCAGAGGAAATGCCCAC
GGGCATGCGAAGAGCGCCAGACACCGTGATCGCGATGCCTATGACGTTCG
AGGAGGCATTCTCGGGGAAAGTGGCGAACGTAACCGTCACACGGCAGAGG
TTGTGCCACACTTGCAAGGGGACCGGCGCCGCCAAGCCAGAGGAAATGCC
CACGTGCCCTTTGTGCGAGGGGAAGGGTTACGCCTACCATCTGTTTGGCG
CCCACGAGTCAAACAACCACAACCACCACCACCACCACCCGGGAGATCGC
TGCTCAAGGCACGAAGACGGTCGCGGCGGGTGCCCTTTGTGCGAGGGGAA
GGGTTACGCCTACCATCTGTTTGGCGCCCACGAGTCAAACAACCACAACC
ACCACCACCACCACCCGGGAGATCGCTGCTCAAGGCACGAAGACGGTCGC
GGCGGG
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