mRNA_L-elsbetiae_contig207.6236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig207.6236.1
Unique NamemRNA_L-elsbetiae_contig207.6236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig207.6236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig207contigL-elsbetiae_contig207:13250..13798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.8370178-CDS-L-elsbetiae_contig207:13249..135971622815850.8370178-CDS-L-elsbetiae_contig207:13249..13597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 13250..13597 +
1691683145.5843067-CDS-L-elsbetiae_contig207:13249..135971691683145.5843067-CDS-L-elsbetiae_contig207:13249..13597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig207 13250..13597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.8539858-UTR-L-elsbetiae_contig207:13597..137981622815850.8539858-UTR-L-elsbetiae_contig207:13597..13798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig207 13598..13798 +
1691683145.5990348-UTR-L-elsbetiae_contig207:13597..137981691683145.5990348-UTR-L-elsbetiae_contig207:13597..13798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig207 13598..13798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig207.6236.1prot_L-elsbetiae_contig207.6236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig207 13250..13597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig207.6236.1

>prot_L-elsbetiae_contig207.6236.1 ID=prot_L-elsbetiae_contig207.6236.1|Name=mRNA_L-elsbetiae_contig207.6236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
SQLFPVLDGLPVTRTSCRGTGPWSHRRDPLPEAPNSPCLRCLPKILVARR
VQPSLFLVDGEVEVEQKITGPRRKRHLRVSGPLDQASPKAYRMYMHACIP
KTRPTSIELARSSIY*
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mRNA from alignment at L-elsbetiae_contig207:13250..13798+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig207.6236.1 ID=mRNA_L-elsbetiae_contig207.6236.1|Name=mRNA_L-elsbetiae_contig207.6236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=549bp|location=Sequence derived from alignment at L-elsbetiae_contig207:13250..13798+ (Laminarionema elsbetiae ELsaHSoW15)
TCACAATTATTTCCAGTGCTTGATGGGCTCCCTGTCACGAGGACATCTTG
CCGGGGTACTGGGCCGTGGTCACACAGAAGGGATCCTCTCCCCGAGGCCC
CAAACTCCCCCTGTCTGCGGTGCTTGCCTAAGATTTTAGTCGCTAGAAGG
GTTCAGCCGTCCCTTTTCCTCGTCGACGGTGAGGTCGAAGTTGAACAAAA
AATAACCGGTCCCCGAAGAAAGCGTCACTTGAGAGTAAGCGGGCCGCTTG
ATCAAGCCTCCCCCAAAGCATATCGCATGTACATGCATGCATGCATACCA
AAAACGCGACCAACTTCGATCGAGCTTGCACGCAGCAGCATATACTGAAC
CCCCGGCCGGTTGGCCTACTATTGTTGTTTTCTTCACATTAGCTCGTATA
ATCGAGACTGCTAGTCCCAATAAACCCGGCAACTCACGCACGGCCCGTGG
TCACAAAAGTGTGCTAGAGACATAAAAAAAGGGCCCTAGAAGAAACACAC
GCAGGATATGAAAGGTACAGTATACCAAAAGACCGAAGCTTACTTGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig207:13250..13798+

>mRNA_L-elsbetiae_contig207.6236.1 ID=mRNA_L-elsbetiae_contig207.6236.1|Name=mRNA_L-elsbetiae_contig207.6236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig207:13250..13798+ (Laminarionema elsbetiae ELsaHSoW15)
TCACAATTATTTCCAGTGCTTGATGGGCTCCCTGTCACGAGGACATCTTG
CCGGGGTACTGGGCCGTGGTCACACAGAAGGGATCCTCTCCCCGAGGCCC
CAAACTCCCCCTGTCTGCGGTGCTTGCCTAAGATTTTAGTCGCTAGAAGG
GTTCAGCCGTCCCTTTTCCTCGTCGACGGTGAGGTCGAAGTTGAACAAAA
AATAACCGGTCCCCGAAGAAAGCGTCACTTGAGAGTAAGCGGGCCGCTTG
ATCAAGCCTCCCCCAAAGCATATCGCATGTACATGCATGCATGCATACCA
AAAACGCGACCAACTTCGATCGAGCTTGCACGCAGCAGCATATACTGATC
ACAATTATTTCCAGTGCTTGATGGGCTCCCTGTCACGAGGACATCTTGCC
GGGGTACTGGGCCGTGGTCACACAGAAGGGATCCTCTCCCCGAGGCCCCA
AACTCCCCCTGTCTGCGGTGCTTGCCTAAGATTTTAGTCGCTAGAAGGGT
TCAGCCGTCCCTTTTCCTCGTCGACGGTGAGGTCGAAGTTGAACAAAAAA
TAACCGGTCCCCGAAGAAAGCGTCACTTGAGAGTAAGCGGGCCGCTTGAT
CAAGCCTCCCCCAAAGCATATCGCATGTACATGCATGCATGCATACCAAA
AACGCGACCAACTTCGATCGAGCTTGCACGCAGCAGCATATACTGA
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