mRNA_L-elsbetiae_contig207.6233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig207.6233.1 vs. uniprot
Match: D7FHS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS7_ECTSI) HSP 1 Score: 428 bits (1100), Expect = 2.010e-136 Identity = 325/582 (55.84%), Postives = 359/582 (61.68%), Query Frame = 2 Query: 2 SPSMARSKEFGDIGVSTSRRSNMDPPMSPRSTEHQRYATGSVVRDGIWFHTSPSSALEPAPGPGEYSPSIISNGYERGRTAKPSSGTVGRQAWDLRGSAGGAPLSNFRDGFTVSSSMGTAPRMGDFSQVSLRDGVLLLRGANDGHRSNGIGPGEYDGTSNRQDPMTKRSYNMRAQNSQVRRERSLSFSGTSSTARAFLSLV-----TDPNYHSKREATTGRPDLHLLGGMGRSA--ALGGLRSRRRCVSPASALLSSMRVRAAAAAERSDSAFGTRTGGESSRSLSPRRNRGRSASPIRGASGGRYGSGNGTRTDDAGRPR-SPFNQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAASFSPQRRQHAVG----AGVGTLSAPSSPGHGRSRSNRSSNRSTVGGKRSPSTKGGGGGFGSDAPYTFDYFGVAGQRGAWRGLEGVAAARAEVGIEAPKKGQ-GKNAARCDGGPPGACNGQGGGGGDGARGVPXXXXXXXXXXSVVXXXXXXX----LLPEGVPAKGLCSPPKETRDDLHTYFEAASRA-----STGSSNLPAPPSPWAPR 1681 SPSMA+SK+FG IGVSTSRRSNMDPP+SPRSTEHQR+ATGSVVRDG+WFH SP A PGPG YSPSIIS+ +ERGRTAKPSSG VGRQAWDLRGSAGG PLSNFR+GF+VSSSMGT PRM DF+QV+LRDGVLLLR ANDGHRSNGIGPGEY G SN QDPMTKRSYNMRAQ+SQ+RRERSLSFSGTSSTA+AFLSL T P S +EA + RPDLHLLG A +GG R SP ER T TG SRSLSP+ NRGRS IRGA+GGRYG G+G G P +Q XXXXXXXXXX + P R +H A ++SAPSSP + R SDA YTFDYFG+AGQRG WRGLE V+AARAEVGIEA K G N+ + A +GG A G XXXXXXXXXX X LLPE VPAKG+CSPPKETRDDLHTY+ A +R ST SNLP PPSP A R Sbjct: 38 SPSMAKSKDFGHIGVSTSRRSNMDPPLSPRSTEHQRHATGSVVRDGVWFHPSPFLAA--GPGPGAYSPSIISSDHERGRTAKPSSGAVGRQAWDLRGSAGGTPLSNFRNGFSVSSSMGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQIRRERSLSFSGTSSTAKAFLSLASSMARTAPT-RSNKEAASCRPDLHLLGRNTYPAPGGVGGRGGDGRSTSPGK--------------ERR-----TDTG---SRSLSPKANRGRSGFAIRGAAGGRYGRGDGIGGVGHGPATFHPISQQXXXXXXXXXXXRQARTTSSGASRECRSLSPRGRDSGGRPVGGGRASPPLRAEHGSSRRKNATSVSISAPSSPRNSRXXXXXXXXXXXXXXXXXXXXXXXXXXX-SDASYTFDYFGLAGQRGVWRGLEAVSAARAEVGIEATKDNDDGHNSNK----QASATGSRGGNEAQSAAGXXXXXXXXXXXXXXXXARGRRGEPGSLLPERVPAKGVCSPPKETRDDLHTYYAAVNRTTAALDSTSGSNLPPPPSPRALR 589
BLAST of mRNA_L-elsbetiae_contig207.6233.1 vs. uniprot
Match: A0A6H5JYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF7_9PHAE) HSP 1 Score: 250 bits (639), Expect = 2.280e-70 Identity = 228/501 (45.51%), Postives = 255/501 (50.90%), Query Frame = 2 Query: 350 MGTAPRMGDFSQVSLRDGVLLLRGANDGHRSNGIGPGEYDGTSNRQDPMTKRSYNMRAQNSQVRRERSLSFSGTSSTARAFLSLV-----TDPNYHSKREATTGRPDLHLL--------------GGMGRSAALGGLRSRRRCVSPASALLSSMRVRAAAAAERSDSA--FGTRTGG--------------ESSRSLSPRRNRGRSASPIRGASGGRYGSGNGTRTDDAGRPR---------SPFNQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAASFSPQRRQHAVGAGVGT----LSAPSSPGHGRSRSNRSSNRSTVGGKRSPSTKGGGGGFGSDAPYTFDYFGVAGQRGAWRGLEGVAAARAEVGIEAPKKGQGKNAARCDGGPPGACNGQGGGGGDGARGVPXXXXXXXXXXSVVXXXXXXXLLPEGVPAKGLCSPPKETRDDLHTYFEAASRA-----STGSSNLPAPPSPWAPRPGSA 1693 MGT PRM DF+QV+LRDGVLLLR ANDGHRSNGIGPGEY G SN QDPMTKRSYNMRAQ+SQVRRERSLSFSGTSSTA+AFLSL T+P S +EA + RPDLHLL GG GRS G RRCVSPASA+LSS+R RAAAAA + +A FG R+GG S R + +SA P GA+ T A P S + P A+ P R + T +SAPSSP + R RS T GG G GG GSDA YTFDYFG+AGQRG WRGLE ++AARAEVGIEA K XXXXXXXXXX+ LLPE PAKG+CSPPKETRDDLHTY+ A +R ST SNLP PPSP A R G A Sbjct: 1 MGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQVRRERSLSFSGTSSTAKAFLSLASSMARTNPT-RSNKEAASCRPDLHLLTRNTYPAPGGVGGRGGDGRSTFPG---KERRCVSPASAMLSSLRGRAAAAANGNGAAATFGLRSGGMRFFIVHLWPMAPAASLRRRTAAAPGSQSAGPPVGATAAAM-----TSVASAAVPSLFTLFLSSSSSSRGAVARHGRQAAGRAGGAVPCHRMAVTAAGGRSAAGGRCSLGQPVGAASPPLRAEPGSSRRKNTTSVSISAPSSPRNSR-RSTAKKYAPTTGGITGAVVGGRGGSNGSDASYTFDYFGLAGQRGVWRGLESISAARAEVGIEATKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRRGGPGSLLPERAPAKGVCSPPKETRDDLHTYYAAVNRTTAALDSTSGSNLPPPPSPRALRQGPA 491 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig207.6233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig207.6233.1 >prot_L-elsbetiae_contig207.6233.1 ID=prot_L-elsbetiae_contig207.6233.1|Name=mRNA_L-elsbetiae_contig207.6233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=562bp MARSKEFGDIGVSTSRRSNMDPPMSPRSTEHQRYATGSVVRDGIWFHTSPback to top mRNA from alignment at L-elsbetiae_contig207:2442..9331+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig207.6233.1 ID=mRNA_L-elsbetiae_contig207.6233.1|Name=mRNA_L-elsbetiae_contig207.6233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6890bp|location=Sequence derived from alignment at L-elsbetiae_contig207:2442..9331+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig207:2442..9331+ >mRNA_L-elsbetiae_contig207.6233.1 ID=mRNA_L-elsbetiae_contig207.6233.1|Name=mRNA_L-elsbetiae_contig207.6233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3372bp|location=Sequence derived from alignment at L-elsbetiae_contig207:2442..9331+ (Laminarionema elsbetiae ELsaHSoW15)back to top |