mRNA_L-elsbetiae_contig20685.6231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20685.6231.1
Unique NamemRNA_L-elsbetiae_contig20685.6231.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20685.6231.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 5.290e-11
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = -2 
Query:   94 RWLAREVAGLTIRIPSPAVLLPPREDEDSELTDTEREESNWIRRLNDWRAHGRRTGKGKAWKKYRLFFLCGHDRSLAECGSGGKGHRI 357
            R + ++VA L   IP    +LP  E     L + +R    W   L +W   G+RTGKG A +K R+FFLC +DRSLAECG GG+G+ +
Sbjct: 1005 RSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEV 1092
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BLAST of mRNA_L-elsbetiae_contig20685.6231.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.100e-10
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -2 
Query:   94 RWLAREVAGLTIRIPSPAVLLPPREDEDSELTDTEREESNWIRRLNDWRAHGRRTGKGKAWKKYRLFFLCGHDRSLAECGSGGKGHRI 357
            R + ++VA L   IP    +LP  E     L + +R    W   L +W   G+RTGKG A +K R+FFLC +DRS+AECG GG+G+ +
Sbjct:  718 RSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEGDRSFEQWSATLRNWCLGGKRTGKGFATRKLRMFFLCPYDRSIAECGPGGQGYEV 805
[Close]
BLAST of mRNA_L-elsbetiae_contig20685.6231.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-5
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = -2 
Query:   91 LAREVAGLTIRIPSPAVLLPPREDEDSELTDTEREESNWIRRLNDWRAH----------GRRTG---------KGKAWKKYRLFFLCGHDRSLAECGSGGKGHRIK 351
            +AREVA L   IP    +LP R   D+ L++++R    W   L +W A            R+T          +G   ++ RLFFLCG D+SLAECG  G+G+ +K
Sbjct:  879 VAREVAILRWPIPRFVCVLPAR---DTRLSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVK 981
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20685.6231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU35_ECTSI5.290e-1143.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L4_9PHAE3.100e-1042.05Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI2.060e-535.85LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20685contigL-elsbetiae_contig20685:1350..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size691
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20685.6231.1prot_L-elsbetiae_contig20685.6231.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20685 1526..1939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.5633755-UTR-L-elsbetiae_contig20685:1349..15251622815850.5633755-UTR-L-elsbetiae_contig20685:1349..1525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1350..1525 +
1691683145.4147048-UTR-L-elsbetiae_contig20685:1349..15251691683145.4147048-UTR-L-elsbetiae_contig20685:1349..1525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1350..1525 +
1622815850.587476-UTR-L-elsbetiae_contig20685:1939..20401622815850.587476-UTR-L-elsbetiae_contig20685:1939..2040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1940..2040 +
1691683145.4399698-UTR-L-elsbetiae_contig20685:1939..20401691683145.4399698-UTR-L-elsbetiae_contig20685:1939..2040Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1940..2040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.5749774-CDS-L-elsbetiae_contig20685:1525..19391622815850.5749774-CDS-L-elsbetiae_contig20685:1525..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 1526..1939 +
1691683145.4253125-CDS-L-elsbetiae_contig20685:1525..19391691683145.4253125-CDS-L-elsbetiae_contig20685:1525..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 1526..1939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20685.6231.1

>prot_L-elsbetiae_contig20685.6231.1 ID=prot_L-elsbetiae_contig20685.6231.1|Name=mRNA_L-elsbetiae_contig20685.6231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MPCLCPSFSHGHASRSVSGSNSIPPSPCPSILNPHPRAGVAAPQGLECEW
SDRLLPLLAICGWPTDGFPYLSWPATGPSPSVSFATGLSSSVLFWRLDLL
LRPPQSPQPSCWIRLSAAGPLVYVDVNGGCAGLRSRP*
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mRNA from alignment at L-elsbetiae_contig20685:1350..2040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20685.6231.1 ID=mRNA_L-elsbetiae_contig20685.6231.1|Name=mRNA_L-elsbetiae_contig20685.6231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=691bp|location=Sequence derived from alignment at L-elsbetiae_contig20685:1350..2040+ (Laminarionema elsbetiae ELsaHSoW15)
CCAACCCAGCGGTTGTCTTCAAGGCCATGTTGACGACGACCAGGAGGGCT
TTCGCGAATGGGAGGCTGCTTTTCATCCACTTCCCGGGCATTTAATTCGG
TGGCCCTTTCCCCCGGATCCGCATTCCGCCAAGCTGCGGTCGTGTCCACA
GAGGAAGAACAGCCTATATTTCTTCCATGCCTTGCCTTTGCCCGTCCTTC
TCCCATGGGCACGCCAGTCGTTCAGTCTCCGGATCCAATTCGATTCCTCC
CTCTCCGTGTCCGTCAATTCTGAATCCTCATCCTCGCGCGGGGGTAGCAG
CACCGCAGGGCTTGGAATGCGAATGGTCAGACCGGCTACTTCCCTTGCTA
GCCATCTGTGGCTGGCCGACTGACGGGTTCCCATATCTGTCATGGCCTGC
AACAGGTCCCTCGCCATCTGTTTCATTTGCAACAGGTCTCTCGTCATCTG
TTTTATTTTGGCGGCTTGATCTGCTCTTGCGGCCTCCACAGTCTCCTCAG
CCTTCTTGTTGGATTCGACTATCTGCTGCAGGTCCTCTCGTGTACGTTGA
TGTAAACGGAGGTTGCGCAGGTTTGCGGTCCAGGCCTTGAGCTCTTGGTC
AGGAAGGGGGCGGCCCACAGCTGAGGTTATGCTGCGCGATATTTCTTTCA
GCTGCTGAGCAACCTGGTCGTCAGTCGATCGACCTTGTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20685:1350..2040+

>mRNA_L-elsbetiae_contig20685.6231.1 ID=mRNA_L-elsbetiae_contig20685.6231.1|Name=mRNA_L-elsbetiae_contig20685.6231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig20685:1350..2040+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGCCTTTGCCCGTCCTTCTCCCATGGGCACGCCAGTCGTTCAGT
CTCCGGATCCAATTCGATTCCTCCCTCTCCGTGTCCGTCAATTCTGAATC
CTCATCCTCGCGCGGGGGTAGCAGCACCGCAGGGCTTGGAATGCGAATGG
TCAGACCGGCTACTTCCCTTGCTAGCCATCTGTGGCTGGCCGACTGACGG
GTTCCCATATCTGTCATGGCCTGCAACAGGTCCCTCGCCATCTGTTTCAT
TTGCAACAGGTCTCTCGTCATCTGTTTTATTTTGGCGGCTTGATCTGCTC
TTGCGGCCTCCACAGTCTCCTCAGCCTTCTTGTTGGATTCGACTATCTGC
TGCAGGTCCTCTCGTGTACGTTGATGTAAACGGAGGTTGCGCAGGTTTGC
GGTCCAGGCCTTGAATGCCTTGCCTTTGCCCGTCCTTCTCCCATGGGCAC
GCCAGTCGTTCAGTCTCCGGATCCAATTCGATTCCTCCCTCTCCGTGTCC
GTCAATTCTGAATCCTCATCCTCGCGCGGGGGTAGCAGCACCGCAGGGCT
TGGAATGCGAATGGTCAGACCGGCTACTTCCCTTGCTAGCCATCTGTGGC
TGGCCGACTGACGGGTTCCCATATCTGTCATGGCCTGCAACAGGTCCCTC
GCCATCTGTTTCATTTGCAACAGGTCTCTCGTCATCTGTTTTATTTTGGC
GGCTTGATCTGCTCTTGCGGCCTCCACAGTCTCCTCAGCCTTCTTGTTGG
ATTCGACTATCTGCTGCAGGTCCTCTCGTGTACGTTGATGTAAACGGAGG
TTGCGCAGGTTTGCGGTCCAGGCCTTGA
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