mRNA_L-elsbetiae_contig20685.6230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20685.6230.1
Unique NamemRNA_L-elsbetiae_contig20685.6230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20685.6230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20685contigL-elsbetiae_contig20685:724..1432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size361
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20685.6230.1prot_L-elsbetiae_contig20685.6230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20685 724..1425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.5070944-CDS-L-elsbetiae_contig20685:723..8021622815850.5070944-CDS-L-elsbetiae_contig20685:723..802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 724..802 -
1691683145.37068-CDS-L-elsbetiae_contig20685:723..8021691683145.37068-CDS-L-elsbetiae_contig20685:723..802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 724..802 -
1622815850.5183496-CDS-L-elsbetiae_contig20685:1150..14251622815850.5183496-CDS-L-elsbetiae_contig20685:1150..1425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 1151..1425 -
1691683145.3885074-CDS-L-elsbetiae_contig20685:1150..14251691683145.3885074-CDS-L-elsbetiae_contig20685:1150..1425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20685 1151..1425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.5291276-UTR-L-elsbetiae_contig20685:1425..14321622815850.5291276-UTR-L-elsbetiae_contig20685:1425..1432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1426..1432 -
1691683145.4031262-UTR-L-elsbetiae_contig20685:1425..14321691683145.4031262-UTR-L-elsbetiae_contig20685:1425..1432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20685 1426..1432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20685.6230.1

>prot_L-elsbetiae_contig20685.6230.1 ID=prot_L-elsbetiae_contig20685.6230.1|Name=mRNA_L-elsbetiae_contig20685.6230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MKSSLPFAKALLVVVNMALKTTAGLGIPADDIAPVGGKEWGEILSFTVEG
AAEATIDAACSAVGETLDERSAVADSVDQTAPTVMALEVTRTPAACCRHR
GRRGNSWKRWYATSALKG
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mRNA from alignment at L-elsbetiae_contig20685:724..1432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20685.6230.1 ID=mRNA_L-elsbetiae_contig20685.6230.1|Name=mRNA_L-elsbetiae_contig20685.6230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig20685:724..1432- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGGATGAAAAGCAGCCTCCCATTCGCGAAAGCCCTCCTGGTCGTCG
TCAACATGGCCTTGAAGACAACCGCTGGGTTGGGTATCCCCGCTGACGAC
ATCGCGCCTGTTGGCGGGAAAGAGTGGGGCGAAATATTGTCGTTTACGGT
GGAGGGTGCAGCGGAAGCCACCATAGACGCCGCATGTTCTGCGGTGGGGG
AGACGCTCGACGAAAGGAGCGCAGTTGCGGACAGTGTGGATCAGACAGCA
CCGACAGTCATGGCGTTGGAGGTCACCCGAACGTGAGCACAAAGCTTGTT
TACTTGGCGCAGGGAAACGCGTTTTGACACGTCGTCGTTGCAGCAAGCTG
CCGAGAATGATTCAGCCTCGTGAGGACTCTATCCCTTCAATACCTGCCAC
GTTAAATGTATAGCCTAGTTTATGGAAGCCACTGCTGTATCCTTCATGGG
GGAACACACGATATAGCCCGAAAACCAAGTTTCACAAACCCGGTCTTAGT
ACTCCGATACGAGTCTCGTATGCGCACCCTTAAGCGCCACAACACTACTG
AGTATTTCATTACAGTAGAGTTGTCTGAAACGTTATTTTCTGGTTCTTCC
ACCATCCTTGGTTTCTCTGATGACAAGCAGGCCAGCAGCCTGCTGCCGAC
ACCGAGGGAGGCGAGGGAACAGCTGGAAACGTTGGTACGCGACCTCAGCG
TTAAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20685:724..1432-

>mRNA_L-elsbetiae_contig20685.6230.1 ID=mRNA_L-elsbetiae_contig20685.6230.1|Name=mRNA_L-elsbetiae_contig20685.6230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig20685:724..1432- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGCAGCCTCCCATTCGCGAAAGCCCTCCTGGTCGTCGTCAACAT
GGCCTTGAAGACAACCGCTGGGTTGGGTATCCCCGCTGACGACATCGCGC
CTGTTGGCGGGAAAGAGTGGGGCGAAATATTGTCGTTTACGGTGGAGGGT
GCAGCGGAAGCCACCATAGACGCCGCATGTTCTGCGGTGGGGGAGACGCT
CGACGAAAGGAGCGCAGTTGCGGACAGTGTGGATCAGACAGCACCGACAG
TCATGGCGTTGGAGGTCACCCGAACATGAAAAGCAGCCTCCCATTCGCGA
AAGCCCTCCTGGTCGTCGTCAACATGGCCTTGAAGACAACCGCTGGGTTG
GGTATCCCCGCTGACGACATCGCGCCTGTTGGCGGGAAAGAGTGGGGCGA
AATATTGTCGTTTACGGTGGAGGGTGCAGCGGAAGCCACCATAGACGCCG
CATGTTCTGCGGTGGGGGAGACGCTCGACGAAAGGAGCGCAGTTGCGGAC
AGTGTGGATCAGACAGCACCGACAGTCATGGCGTTGGAGGTCACCCGAAC
GCCAGCAGCCTGCTGCCGACACCGAGGGAGGCGAGGGAACAGCTGGAAAC
GTTGGTACGCGACCTCAGCGTTAAAGGGCGCCAGCAGCCTGCTGCCGACA
CCGAGGGAGGCGAGGGAACAGCTGGAAACGTTGGTACGCGACCTCAGCGT
TAAAGGGC
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