mRNA_L-elsbetiae_contig20669.6228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20669.6228.1
Unique NamemRNA_L-elsbetiae_contig20669.6228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.760e-41
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHNFPFSVMLPPGLPPSM 231
            LVLRL+GVAKTRVMYDTTNMAH+ +NAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSH+FPF VMLPPGLPPSM
Sbjct:   41 LVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSM 117
[Close]
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.970e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHNFPFSVMLPPGLPPSM 231
            LV+RL G+AKTR M+  T +  + + A  YT+R+ML+E  EFL YDVQLA FGGKAASG H + FSV LPP LP SM
Sbjct:   40 LVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASM 116
[Close]
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.960e-19
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHNFPFSVMLPPGLPPSM 231
            LV+RL G+AKTR M+  T +  + + A  YT+R+ L+E  EFL YDVQLA FGG+AASG H + FSV LPP LP SM
Sbjct:   40 LVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASM 116
[Close]
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Match: D7FWP7_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.450e-13
Identity = 43/77 (55.84%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHNFPFSVMLPPGLPPSM 231
            L LRL G  KT V Y T     +          +M  E KE LSYDVQL +FGGKAASG HNF FSV LP GLPPSM
Sbjct:   42 LKLRLVGHVKTAVDYSTDKGEET----------KMAREDKEILSYDVQLGSFGGKAASGVHNFLFSVTLPAGLPPSM 108
[Close]
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Match: R1EL60_EMIHU (Arrestin_N domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EL60_EMIHU)

HSP 1 Score: 47.8 bits (112), Expect = 8.000e-5
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:    1 LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLAAF-GGKAASGSHNFPFSVMLPPGLPPSM 231
            L L +FG   + V + T     SG N ++ T       ++  L   V LA+F  G    GS+ FPFS++LP GLP SM
Sbjct:   40 LQLEVFGAEFSHVHWTTQETHGSGENRKTVTKHHHAYARRHLLRVVVTLASFPNGSLPPGSYEFPFSLVLPSGLPSSM 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20669.6228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWP5_ECTSI4.760e-4192.21Arrestin_N domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5KH15_9PHAE1.970e-2059.74Arrestin_C domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP6_ECTSI1.960e-1957.14Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP7_ECTSI1.450e-1355.84Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
R1EL60_EMIHU8.000e-537.18Arrestin_N domain-containing protein n=1 Tax=Emili... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20669contigL-elsbetiae_contig20669:567..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.4038405-CDS-L-elsbetiae_contig20669:566..7971622815850.4038405-CDS-L-elsbetiae_contig20669:566..797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20669 567..797 +
1691683145.305538-CDS-L-elsbetiae_contig20669:566..7971691683145.305538-CDS-L-elsbetiae_contig20669:566..797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20669 567..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20669.6228.1prot_L-elsbetiae_contig20669.6228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20669 567..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20669.6228.1

>prot_L-elsbetiae_contig20669.6228.1 ID=prot_L-elsbetiae_contig20669.6228.1|Name=mRNA_L-elsbetiae_contig20669.6228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
LVLRLFGVAKTRVMYDTTNMAHSGNNAQSYTHREMLTEKKEFLSYDVQLA
AFGGKAASGSHNFPFSVMLPPGLPPSM
back to top

mRNA from alignment at L-elsbetiae_contig20669:567..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20669.6228.1 ID=mRNA_L-elsbetiae_contig20669.6228.1|Name=mRNA_L-elsbetiae_contig20669.6228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=231bp|location=Sequence derived from alignment at L-elsbetiae_contig20669:567..797+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTGCTGCGACTGTTCGGCGTGGCCAAGACGAGGGTCATGTACGACAC
GACGAACATGGCCCACAGCGGCAACAACGCCCAGTCTTACACACACCGCG
AAATGCTGACCGAGAAAAAGGAGTTTCTCTCGTACGACGTGCAGCTGGCG
GCGTTCGGCGGGAAAGCGGCATCTGGAAGTCACAACTTCCCATTCTCCGT
CATGCTTCCTCCGGGATTGCCGCCGTCGATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20669:567..797+

>mRNA_L-elsbetiae_contig20669.6228.1 ID=mRNA_L-elsbetiae_contig20669.6228.1|Name=mRNA_L-elsbetiae_contig20669.6228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig20669:567..797+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTGCTGCGACTGTTCGGCGTGGCCAAGACGAGGGTCATGTACGACAC
GACGAACATGGCCCACAGCGGCAACAACGCCCAGTCTTACACACACCGCG
AAATGCTGACCGAGAAAAAGGAGTTTCTCTCGTACGACGTGCAGCTGGCG
GCGTTCGGCGGGAAAGCGGCATCTGGAAGTCACAACTTCCCATTCTCCGT
CATGCTTCCTCCGGGATTGCCGCCGTCGATGCTTGTGCTGCGACTGTTCG
GCGTGGCCAAGACGAGGGTCATGTACGACACGACGAACATGGCCCACAGC
GGCAACAACGCCCAGTCTTACACACACCGCGAAATGCTGACCGAGAAAAA
GGAGTTTCTCTCGTACGACGTGCAGCTGGCGGCGTTCGGCGGGAAAGCGG
CATCTGGAAGTCACAACTTCCCATTCTCCGTCATGCTTCCTCCGGGATTG
CCGCCGTCGATG
back to top