mRNA_L-elsbetiae_contig20650.6226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20650.6226.1
Unique NamemRNA_L-elsbetiae_contig20650.6226.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20650.6226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20650contigL-elsbetiae_contig20650:732..1408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size346
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.3306737-CDS-L-elsbetiae_contig20650:731..10351622815850.3306737-CDS-L-elsbetiae_contig20650:731..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20650 732..1035 -
1691683145.2737226-CDS-L-elsbetiae_contig20650:731..10351691683145.2737226-CDS-L-elsbetiae_contig20650:731..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20650 732..1035 -
1622815850.3408585-CDS-L-elsbetiae_contig20650:1367..14081622815850.3408585-CDS-L-elsbetiae_contig20650:1367..1408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20650 1368..1408 -
1691683145.282785-CDS-L-elsbetiae_contig20650:1367..14081691683145.282785-CDS-L-elsbetiae_contig20650:1367..1408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20650 1368..1408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20650.6226.1prot_L-elsbetiae_contig20650.6226.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20650 732..1408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20650.6226.1

>prot_L-elsbetiae_contig20650.6226.1 ID=prot_L-elsbetiae_contig20650.6226.1|Name=mRNA_L-elsbetiae_contig20650.6226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MISPYLPRSPPLYRCSRKCSYAMPRNAYTSTSNTRRCDLGTSWTSSTCRP
WRRSAGARTGARGTQSSASAMPPTSPPACKQPLPVAPLSITPSTLPTTGP
LQHPPPRQPARGRNH
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mRNA from alignment at L-elsbetiae_contig20650:732..1408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20650.6226.1 ID=mRNA_L-elsbetiae_contig20650.6226.1|Name=mRNA_L-elsbetiae_contig20650.6226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=677bp|location=Sequence derived from alignment at L-elsbetiae_contig20650:732..1408- (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCTCCGTACCTTCCTCGATCTCCACCCTTATACCGGTGAGATGT
TACCTTTGATTTTCACTTGCCGTAGATGTTCCTGCATCTTGTCACATTTT
CCTGTCGCTTCAAATATTTGCTCTTTCCACCCATTATTTTTTCCTTCGGT
CCGGATTCCTCCCTTCCCGCGTACCTCCGACTGTATTCCACTGTTCCGCT
TTCACAACGCTCTTCTGTTTGCCTCGCACTTCGATCGACGATCGTTCTTG
CGTCTCCACTTCAAAGGAGCGCTTTCTCCCTTCACCGCAATTTTCCAATC
GGCAAACGTTTATTTTGTTAACACACATGTCTTATGTGTGCTCCCTCGTT
CCCTATTTTCCGCTACATACAAGGTGCTCGAGGAAATGCTCTTATGCGAT
GCCGAGGAATGCATACACCTCGACGTCGAACACCAGAAGATGCGATCTGG
GTACATCTTGGACGTCAAGTACGTGTCGGCCGTGGAGAAGAAGCGCTGGG
GCACGGACCGGCGCTAGGGGTACTCAGTCGTCGGCCTCAGCGATGCCCCC
GACATCACCGCCAGCTTGCAAGCAACCCCTTCCTGTCGCACCCCTTTCCA
TCACACCATCGACCTTGCCAACGACGGGCCCGCTGCAGCATCCTCCTCCA
CGACAACCCGCAAGAGGAAGAAATCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20650:732..1408-

>mRNA_L-elsbetiae_contig20650.6226.1 ID=mRNA_L-elsbetiae_contig20650.6226.1|Name=mRNA_L-elsbetiae_contig20650.6226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig20650:732..1408- (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCTCCGTACCTTCCTCGATCTCCACCCTTATACCGATGATATCT
CCGTACCTTCCTCGATCTCCACCCTTATACCGGTGCTCGAGGAAATGCTC
TTATGCGATGCCGAGGAATGCATACACCTCGACGTCGAACACCAGAAGAT
GCGATCTGGGTACATCTTGGACGTCAAGTACGTGTCGGCCGTGGAGAAGA
AGCGCTGGGGCACGGACCGGCGCTAGGGGTACTCAGTCGTCGGCCTCAGC
GATGCCCCCGACATCACCGCCAGCTTGCAAGCAACCCCTTCCTGTCGCAC
CCCTTTCCATCACACCATCGACCTTGCCAACGACGGGCCCGCTGCAGCAT
CCTCCTCCACGACAACCCGCAAGAGGAAGAAATCACGTGCTCGAGGAAAT
GCTCTTATGCGATGCCGAGGAATGCATACACCTCGACGTCGAACACCAGA
AGATGCGATCTGGGTACATCTTGGACGTCAAGTACGTGTCGGCCGTGGAG
AAGAAGCGCTGGGGCACGGACCGGCGCTAGGGGTACTCAGTCGTCGGCCT
CAGCGATGCCCCCGACATCACCGCCAGCTTGCAAGCAACCCCTTCCTGTC
GCACCCCTTTCCATCACACCATCGACCTTGCCAACGACGGGCCCGCTGCA
GCATCCTCCTCCACGACAACCCGCAAGAGGAAGAAATCAC
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