mRNA_L-elsbetiae_contig20648.6224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20648.6224.1
Unique NamemRNA_L-elsbetiae_contig20648.6224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20648.6224.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.500e-24
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  112 STMATRSDAIQTAQETARLGVSTVVESIATGIIEIGAATPVVA-LCVAVLEAKGIVEGASRNKEELDELC 318
            STMATR DA+Q+AQETARLG+STVVES+ATGIIEIGAATPVVA LCVA+L+AKGIV+GASRNKEEL ELC
Sbjct:   77 STMATRGDAVQSAQETARLGISTVVESVATGIIEIGAATPVVAPLCVALLKAKGIVDGASRNKEELGELC 146
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BLAST of mRNA_L-elsbetiae_contig20648.6224.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.080e-12
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = -3 
Query:  115 MATRSDAIQTAQETARLGVSTVVESIATGIIEIGAATPVVA-LCVAVLEAKGIVEGASRNKEELDEL 312
            MATR DA+Q  +E  R    TVV+S A G IEIGA+ PVVA LC A+L+AKG+V+ ASRNKEEL+EL
Sbjct:    1 MATRGDAVQATREGVRFTALTVVQSFAEGAIEIGASAPVVAPLCTALLKAKGVVDAASRNKEELEEL 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20648.6224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE50_9PHAE3.500e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI2_9PHAE5.080e-1262.69NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20648contigL-elsbetiae_contig20648:1425..1750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.1336348-CDS-L-elsbetiae_contig20648:1424..17421622815850.1336348-CDS-L-elsbetiae_contig20648:1424..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20648 1425..1742 +
1691683145.1415305-CDS-L-elsbetiae_contig20648:1424..17421691683145.1415305-CDS-L-elsbetiae_contig20648:1424..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20648 1425..1742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.1449382-UTR-L-elsbetiae_contig20648:1742..17501622815850.1449382-UTR-L-elsbetiae_contig20648:1742..1750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20648 1743..1750 +
1691683145.1503437-UTR-L-elsbetiae_contig20648:1742..17501691683145.1503437-UTR-L-elsbetiae_contig20648:1742..1750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20648 1743..1750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20648.6224.1prot_L-elsbetiae_contig20648.6224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20648 1425..1742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20648.6224.1

>prot_L-elsbetiae_contig20648.6224.1 ID=prot_L-elsbetiae_contig20648.6224.1|Name=mRNA_L-elsbetiae_contig20648.6224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
RNSPPDAPKSVELDRACFAPDSPPEAVAPPPAQASSCAQLIQLLLVATGP
LYDTLGLQHGYAESHDWRGCTDLDYSRRNRLYYGRHPEPRRLLRGLNSVT
SGGHG*
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mRNA from alignment at L-elsbetiae_contig20648:1425..1750+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20648.6224.1 ID=mRNA_L-elsbetiae_contig20648.6224.1|Name=mRNA_L-elsbetiae_contig20648.6224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig20648:1425..1750+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAATTCACCGCCTGATGCGCCGAAGTCCGTAGAATTGGATCGGGCCTG
TTTCGCCCCAGACTCTCCCCCAGAGGCAGTGGCACCACCTCCCGCACAGG
CATCATCATGCGCACAGCTCATCCAGCTCCTCCTTGTTGCGACTGGCCCC
CTCTACGATACCCTTGGCCTCCAGCACGGCTACGCAGAGAGCCACGACTG
GCGTGGCTGCACCGATCTCGATTATTCCCGTCGCAATCGACTCTACTACG
GTCGACACCCCGAGCCTCGCCGTCTCTTGCGCGGTCTGAATAGCGTCACT
TCGGGTGGCCATGGTTGAATTGTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20648:1425..1750+

>mRNA_L-elsbetiae_contig20648.6224.1 ID=mRNA_L-elsbetiae_contig20648.6224.1|Name=mRNA_L-elsbetiae_contig20648.6224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig20648:1425..1750+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAATTCACCGCCTGATGCGCCGAAGTCCGTAGAATTGGATCGGGCCTG
TTTCGCCCCAGACTCTCCCCCAGAGGCAGTGGCACCACCTCCCGCACAGG
CATCATCATGCGCACAGCTCATCCAGCTCCTCCTTGTTGCGACTGGCCCC
CTCTACGATACCCTTGGCCTCCAGCACGGCTACGCAGAGAGCCACGACTG
GCGTGGCTGCACCGATCTCGATTATTCCCGTCGCAATCGACTCTACTACG
GTCGACACCCCGAGCCTCGCCGTCTCTTGCGCGGTCTGAATAGCGTCACT
TCGGGTGGCCATGGTTGAAGGAATTCACCGCCTGATGCGCCGAAGTCCGT
AGAATTGGATCGGGCCTGTTTCGCCCCAGACTCTCCCCCAGAGGCAGTGG
CACCACCTCCCGCACAGGCATCATCATGCGCACAGCTCATCCAGCTCCTC
CTTGTTGCGACTGGCCCCCTCTACGATACCCTTGGCCTCCAGCACGGCTA
CGCAGAGAGCCACGACTGGCGTGGCTGCACCGATCTCGATTATTCCCGTC
GCAATCGACTCTACTACGGTCGACACCCCGAGCCTCGCCGTCTCTTGCGC
GGTCTGAATAGCGTCACTTCGGGTGGCCATGGTTGA
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