mRNA_L-elsbetiae_contig20641.6222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20641.6222.1
Unique NamemRNA_L-elsbetiae_contig20641.6222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20641.6222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20641contigL-elsbetiae_contig20641:186..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.0513241-UTR-L-elsbetiae_contig20641:185..4681622815850.0513241-UTR-L-elsbetiae_contig20641:185..468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20641 186..468 +
1691683145.1128364-UTR-L-elsbetiae_contig20641:185..4681691683145.1128364-UTR-L-elsbetiae_contig20641:185..468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20641 186..468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815850.0646617-CDS-L-elsbetiae_contig20641:468..7891622815850.0646617-CDS-L-elsbetiae_contig20641:468..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20641 469..789 +
1691683145.1239412-CDS-L-elsbetiae_contig20641:468..7891691683145.1239412-CDS-L-elsbetiae_contig20641:468..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20641 469..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20641.6222.1prot_L-elsbetiae_contig20641.6222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20641 469..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20641.6222.1

>prot_L-elsbetiae_contig20641.6222.1 ID=prot_L-elsbetiae_contig20641.6222.1|Name=mRNA_L-elsbetiae_contig20641.6222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MEIYLQPSYFSYESTRCRAEKSSSTQDVALPRRFLLAVNTDFLRLALFSS
YAARLSAFTELLCCGRGRHDSTCSADAVDRSCWTSWDTPRASRRSRLLCC
GRGIGTI
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mRNA from alignment at L-elsbetiae_contig20641:186..789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20641.6222.1 ID=mRNA_L-elsbetiae_contig20641.6222.1|Name=mRNA_L-elsbetiae_contig20641.6222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=604bp|location=Sequence derived from alignment at L-elsbetiae_contig20641:186..789+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTTGACGGGGCGGTGGGGCCAGAATGTGTTTGACATGCAGACCGGAT
GTGAAAATTGCACAAGCCGCCGGGAGACGAAATCAGTCGTCGGACGGAGG
GTTCCACGACTACGAGGACGGCGTATTGTATCGAATATTGACGGTAGTAG
CGAAGTGTTTGTTGCTGTGGTGCGTGCCATGTAGTATTGAATACGCAGCG
GAGTCGCCGCAGGCACGAATGTGAAAAATGTTGGAGTGGGGCATGTAGAG
TCAACCGATATCCGTGTGAACGGCTCCGGCGCCATGGAAATTTATCTTCA
GCCATCTTACTTTAGCTACGAGTCTACCCGTTGTAGAGCTGAGAAGTCAT
CTTCTACGCAGGATGTCGCGCTCCCCAGACGGTTTCTCCTCGCTGTCAAC
ACGGACTTCCTACGACTTGCTTTGTTTTCGTCATACGCCGCGCGCCTCTC
GGCGTTCACGGAGCTTCTTTGTTGCGGGCGTGGTAGGCACGATTCCACTT
GCTCTGCTGATGCTGTGGATCGGAGTTGCTGGACTTCTTGGGATACGCCG
CGCGCCTCTCGGCGTTCACGGCTTCTTTGTTGCGGGCGTGGTATAGGCAC
GATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20641:186..789+

>mRNA_L-elsbetiae_contig20641.6222.1 ID=mRNA_L-elsbetiae_contig20641.6222.1|Name=mRNA_L-elsbetiae_contig20641.6222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig20641:186..789+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAATTTATCTTCAGCCATCTTACTTTAGCTACGAGTCTACCCGTTG
TAGAGCTGAGAAGTCATCTTCTACGCAGGATGTCGCGCTCCCCAGACGGT
TTCTCCTCGCTGTCAACACGGACTTCCTACGACTTGCTTTGTTTTCGTCA
TACGCCGCGCGCCTCTCGGCGTTCACGGAGCTTCTTTGTTGCGGGCGTGG
TAGGCACGATTCCACTTGCTCTGCTGATGCTGTGGATCGGAGTTGCTGGA
CTTCTTGGGATACGCCGCGCGCCTCTCGGCGTTCACGGCTTCTTTGTTGC
GGGCGTGGTATAGGCACGATTATGGAAATTTATCTTCAGCCATCTTACTT
TAGCTACGAGTCTACCCGTTGTAGAGCTGAGAAGTCATCTTCTACGCAGG
ATGTCGCGCTCCCCAGACGGTTTCTCCTCGCTGTCAACACGGACTTCCTA
CGACTTGCTTTGTTTTCGTCATACGCCGCGCGCCTCTCGGCGTTCACGGA
GCTTCTTTGTTGCGGGCGTGGTAGGCACGATTCCACTTGCTCTGCTGATG
CTGTGGATCGGAGTTGCTGGACTTCTTGGGATACGCCGCGCGCCTCTCGG
CGTTCACGGCTTCTTTGTTGCGGGCGTGGTATAGGCACGATT
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