mRNA_L-elsbetiae_contig20625.6218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20625.6218.1
Unique NamemRNA_L-elsbetiae_contig20625.6218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.820e-35
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GIMR K+CRTYINPYVGWLSNGRQWRCNVCGMVNDTP SY CHLDQDG+RSD+AERPE G+ASVE+V
Sbjct:  230 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPPSYQCHLDQDGRRSDRAERPELGKASVEMV 296
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A813A2P3_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2P3_SYMMI)

HSP 1 Score: 108 bits (270), Expect = 3.320e-28
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R K+CRTYINP+V W+ NGR+WRCN+CGM+ND P SY  HLDQ+GQR DK +RPE  + SVE +
Sbjct:   21 GIVRCKRCRTYINPFVSWVDNGRRWRCNICGMLNDVPTSYFSHLDQNGQRRDKDQRPELSRCSVEFI 87
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.160e-26
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVEL 198
            GI+R K+CRTYINP+V W++NGRQWRCNVCGMVND P SY CHLD +G R D+ +RPE    SVE+
Sbjct:  190 GIVRCKRCRTYINPFVSWMNNGRQWRCNVCGMVNDVPTSYFCHLDANGMRRDRDQRPELAYGSVEI 255
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A812VPB2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VPB2_SYMMI)

HSP 1 Score: 108 bits (270), Expect = 5.790e-26
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R K+CRTYINP+V W+ NGR+WRCN+CGM+ND P SY  HLDQ+GQR DK +RPE  + SVE +
Sbjct:  114 GIVRCKRCRTYINPFVSWVDNGRRWRCNICGMLNDVPTSYFSHLDQNGQRRDKDQRPELSRCSVEFI 180
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 108 bits (269), Expect = 7.930e-26
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R K+CRTYINP+V W+ NGR+WRCN+CGMVN+ P +Y CHLD DGQR D+ +RPE  + SVE V
Sbjct:   39 GIVRCKRCRTYINPFVSWVENGRRWRCNMCGMVNEVPTAYFCHLDADGQRRDREQRPELCKGSVEFV 105
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A7S2RFQ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFQ4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.040e-26
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R K+CRTYIN +V W+ NGR+WRCN+C  +N+ PASY CHLD DGQR DKA+RPE  QA+VE V
Sbjct:  178 GIVRCKRCRTYINAHVSWMDNGRRWRCNICAQLNECPASYFCHLDADGQRRDKAQRPELSQAAVEWV 244
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A7R9ZHV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHV8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.540e-25
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R K+CRTYIN +V WL NGR+WRCN+C  +N+ P++Y CHLD DG R DK +RPE  ++ VE V
Sbjct:   40 GIIRCKRCRTYINAFVTWLENGRRWRCNICAQLNECPSAYFCHLDNDGTRRDKLQRPELSESVVEFV 106
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A7S2W394_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W394_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.400e-24
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVEL 198
            GI+R ++CRTYINP+V W++NGRQWRCN+CG VN+ P SY CHL+ DG R D+ ERPE  + SVE+
Sbjct:  181 GIIRCRRCRTYINPFVSWVNNGRQWRCNICGYVNEVPQSYFCHLNTDGTRKDRNERPELCKGSVEI 246
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: A0A8J2SWF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWF0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.380e-24
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSDKAERPERGQASVELV 201
            GI+R KKCR Y+NP+V W++NGRQWRCNVCG  ND P SY C LD+ G+R D+ +RPE  + SVELV
Sbjct:  517 GIVRCKKCRAYVNPFVAWVNNGRQWRCNVCGFSNDVPNSYFCQLDERGRRRDRDQRPELSKGSVELV 583
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BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Match: F0YAP0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAP0_AURAN)

HSP 1 Score: 102 bits (254), Expect = 8.620e-24
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 GIMRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQD-GQRSDKAERPERGQASVELV 201
            GI+R KKCR Y+NP+V W++NGRQWRCNVCG VND P SY C LD + G+R DK +RPE  + SVELV
Sbjct:  978 GIVRCKKCRAYVNPFVSWVNNGRQWRCNVCGFVNDVPNSYFCQLDPETGERRDKQQRPELCKGSVELV 1045
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20625.6218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI2.820e-3586.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813A2P3_SYMMI3.320e-2864.18Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A836CAX8_9STRA3.160e-2666.67Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A812VPB2_SYMMI5.790e-2664.18Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S4D505_HETAK7.930e-2664.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RFQ4_9STRA8.040e-2665.67Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7R9ZHV8_9STRA1.540e-2558.21Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2W394_9STRA1.400e-2462.12Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J2SWF0_9STRA3.380e-2462.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YAP0_AURAN8.620e-2464.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20625contigL-elsbetiae_contig20625:2130..2336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue9.6e-29
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size207
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815849.501049-UTR-L-elsbetiae_contig20625:2129..21351622815849.501049-UTR-L-elsbetiae_contig20625:2129..2135Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20625 2130..2135 +
1691683144.7076726-UTR-L-elsbetiae_contig20625:2129..21351691683144.7076726-UTR-L-elsbetiae_contig20625:2129..2135Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20625 2130..2135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815849.515393-CDS-L-elsbetiae_contig20625:2135..23361622815849.515393-CDS-L-elsbetiae_contig20625:2135..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20625 2136..2336 +
1691683144.7231214-CDS-L-elsbetiae_contig20625:2135..23361691683144.7231214-CDS-L-elsbetiae_contig20625:2135..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20625 2136..2336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20625.6218.1prot_L-elsbetiae_contig20625.6218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20625 2136..2336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20625.6218.1

>prot_L-elsbetiae_contig20625.6218.1 ID=prot_L-elsbetiae_contig20625.6218.1|Name=mRNA_L-elsbetiae_contig20625.6218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MRGKKCRTYINPYVGWLSNGRQWRCNVCGMVNDTPASYHCHLDQDGQRSD
KAERPERGQASVELVR*
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mRNA from alignment at L-elsbetiae_contig20625:2130..2336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20625.6218.1 ID=mRNA_L-elsbetiae_contig20625.6218.1|Name=mRNA_L-elsbetiae_contig20625.6218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig20625:2130..2336+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATCATGCGGGGCAAGAAATGCCGCACGTACATCAACCCGTACGTGGG
CTGGCTGAGCAACGGGCGGCAGTGGCGGTGTAACGTGTGCGGCATGGTGA
ACGACACCCCGGCGTCGTACCACTGCCACCTGGACCAGGACGGCCAGAGG
TCTGACAAGGCGGAGCGCCCGGAGCGCGGGCAGGCCAGCGTGGAGTTGGT
GAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20625:2130..2336+

>mRNA_L-elsbetiae_contig20625.6218.1 ID=mRNA_L-elsbetiae_contig20625.6218.1|Name=mRNA_L-elsbetiae_contig20625.6218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig20625:2130..2336+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGGCAAGAAATGCCGCACGTACATCAACCCGTACGTGGGCTGGCT
GAGCAACGGGCGGCAGTGGCGGTGTAACGTGTGCGGCATGGTGAACGACA
CCCCGGCGTCGTACCACTGCCACCTGGACCAGGACGGCCAGAGGTCTGAC
AAGGCGGAGCGCCCGGAGCGCGGGCAGGCCAGCGTGGAGTTGGTGAGATG
AATGCGGGGCAAGAAATGCCGCACGTACATCAACCCGTACGTGGGCTGGC
TGAGCAACGGGCGGCAGTGGCGGTGTAACGTGTGCGGCATGGTGAACGAC
ACCCCGGCGTCGTACCACTGCCACCTGGACCAGGACGGCCAGAGGTCTGA
CAAGGCGGAGCGCCCGGAGCGCGGGCAGGCCAGCGTGGAGTTGGTGAGAT
GA
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