mRNA_L-elsbetiae_contig2062.6216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2062.6216.1
Unique NamemRNA_L-elsbetiae_contig2062.6216.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: D7FX58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX58_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.160e-85
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSED 659
            MFYLKEL+RPML+PPSDFGPK KDTIRRKLIEEVEGTSVGSLGFVITV +++DDQI MGTIEFDTGFANV+ VYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSED
Sbjct:    1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSED 135
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A835YX29_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX29_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.470e-50
Identity = 84/137 (61.31%), Postives = 104/137 (75.91%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMS--ITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAG-GYDPVGDMWVSSE 656
            MFYLK LK+ +L+ P  FGP   + + R L+E+VEG S+G+ GFVI+V S    +  + MGTIE+DTG AN++  Y AICFRPF NEVLDA VS+VT+LGFFAEVGPLE+FVSR  MP+DIA  GYD VGDMWVS +
Sbjct:    1 MFYLKTLKKDLLLEPQFFGPNLHEVVGRLLLEQVEGMSLGNDGFVISVFSQNSANTSMEMGTIEYDTGAANIICTYEAICFRPFRNEVLDATVSNVTDLGFFAEVGPLEIFVSRFNMPEDIANTGYDSVGDMWVSED 137
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A6S9LV75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LV75_HETAK)

HSP 1 Score: 169 bits (428), Expect = 8.630e-50
Identity = 80/134 (59.70%), Postives = 100/134 (74.63%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LK+L R + +PP+  GPK K+TIRR+LIEEVEG +VG LG+VITV  + D+ I  G IE+D+GF     VY AICFRPF +EVLDA +S VTELGFFA+VGPL VFVSR  MP D+  GYDP  ++W S +
Sbjct:    1 MFFLKQLTRELQLPPAFLGPKLKETIRRRLIEEVEGQAVGKLGYVITVTEMKDEAISQGLIEYDSGFVTFNVVYSAICFRPFRDEVLDATISSVTELGFFADVGPLTVFVSRHAMPADLQEGYDPARELWQSED 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A7S2Y2T3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2T3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.900e-43
Identity = 75/134 (55.97%), Postives = 95/134 (70.90%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LKEL R +L+PP+  GPK K+TIRR+LIEEVEGT +G  G+VITV  + ++ +  G I  + G       Y AICFRPF  EVLDA V+ VTELGFFAEVGPL+VFVSR  MP D+  G+D   ++WVS +
Sbjct:    1 MFFLKELTRELLLPPAYLGPKIKETIRRRLIEEVEGTCLGKYGYVITVTEVKEEGMKTGVISNEFGEVIFHISYDAICFRPFKGEVLDANVTVVTELGFFAEVGPLQVFVSRHAMPQDLQEGFDAANEVWVSED 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A225WVR4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVR4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.600e-42
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LK+L R +L+ P  FGPK  D IR +LIEEVEGTS+G  G+VITV  + D+ I  G I+ ++GF      YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWISDD 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: K3XAJ8_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3XAJ8_GLOUD)

HSP 1 Score: 150 bits (379), Expect = 1.970e-42
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LK+L R +L+ P  FGPK  D IR +LIEEVEGTS+G  G+VITV  + D+ I  G I+ ++GF      YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWISDD 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A024TU38_9STRA (Uncharacterized protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TU38_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.840e-42
Identity = 74/134 (55.22%), Postives = 92/134 (68.66%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LK+LKR +L+ P  FGPK  D IR +LIEEVEGTS+G  G+VI V  + D+ I  G I+ ++GF      YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGFVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWISQD 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A425DP05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DP05_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.050e-41
Identity = 73/134 (54.48%), Postives = 92/134 (68.66%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+LK+LKR +L+ P  FGPK  D IR +LIEEVEGTS+G  G+VI V  + D+ I  G I+ ++G+      YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGYVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWISQD 134
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A7S2HLJ0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLJ0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.470e-40
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDD-QIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            MF+ K+L+  +LI P   GPK K TIRR+LI+E+EG+ +  +G+V+ V  I D   I  G IE++TG  + +  Y A+ FRPF NEVLDA V+ V +LGFF + GPL+VFVSR  +P DI  G+DP  DMWVS +
Sbjct:    1 MFFYKKLRHEVLISPEYLGPKLKQTIRRRLIDEIEGSCINKIGYVVCVTDINDTTDIEAGLIEYETGHTSFMVTYGAVLFRPFKNEVLDATVTTVNQLGFFCKAGPLQVFVSRYNLPGDIREGFDPNQDMWVSED 135
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BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Match: A0A024GUM2_9STRA (ING domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUM2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.970e-40
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 3 
Query:  246 ITSMFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMSITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSE 656
            + +MF+LK+L R +L+ P  FGPK  D IR +LIEEVEGTS+G  G+VITV  + D+ I  G I+  +G+      YRAI FRPF N+VLDA VS V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +
Sbjct:  262 LVNMFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDSSGYVCFNIRYRAILFRPFKNQVLDAVVSVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWISDD 398
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2062.6216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX58_ECTSI1.160e-8592.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX29_9STRA1.470e-5061.31S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A6S9LV75_HETAK8.630e-5059.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y2T3_9STRA1.900e-4355.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A225WVR4_9STRA1.600e-4254.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
K3XAJ8_GLOUD1.970e-4254.48Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A024TU38_9STRA3.840e-4255.22Uncharacterized protein n=8 Tax=Saprolegniaceae Ta... [more]
A0A425DP05_9STRA5.050e-4154.48Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2HLJ0_9STRA2.470e-4050.37Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A024GUM2_9STRA5.970e-4053.28ING domain-containing protein n=1 Tax=Albugo candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2062contigL-elsbetiae_contig2062:12248..17663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue2.1e-67
Seed eggNOG ortholog2880.D7FX58
Preferred namePOLR2G
KEGG rclassRC00003,RC00060,RC00181,RC00496,RC02795
KEGG koko:K03015,ko:K09186
KEGG ReactionR00435,R00441,R00442,R00443,R03875,R03938,R04866,R04867
KEGG Pathwayko00230,ko00240,ko00310,ko01100,ko03020,ko04934,ko05016,ko05169,ko05202,map00230,map00240,map00310,map01100,map03020,map04934,map05016,map05169,map05202
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010590,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012501,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031369,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0045935,GO:0045948,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051302,GO:0051716,GO:0055029,GO:0060147,GO:0060211,GO:0060213,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0061014,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097159,GO:0097393,GO:0097394,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1903313,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGsCOG1095@1,KOG3298@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03021,ko03036,ko03400
Exons5
Model size661
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2062.6216.1prot_L-elsbetiae_contig2062.6216.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2062 12248..17409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815849.3378835-CDS-L-elsbetiae_contig2062:12247..123131622815849.3378835-CDS-L-elsbetiae_contig2062:12247..12313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 12248..12313 -
1691683144.5775936-CDS-L-elsbetiae_contig2062:12247..123131691683144.5775936-CDS-L-elsbetiae_contig2062:12247..12313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 12248..12313 -
1622815849.350698-CDS-L-elsbetiae_contig2062:13869..140581622815849.350698-CDS-L-elsbetiae_contig2062:13869..14058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 13870..14058 -
1691683144.5958292-CDS-L-elsbetiae_contig2062:13869..140581691683144.5958292-CDS-L-elsbetiae_contig2062:13869..14058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 13870..14058 -
1622815849.3630037-CDS-L-elsbetiae_contig2062:15149..152191622815849.3630037-CDS-L-elsbetiae_contig2062:15149..15219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 15150..15219 -
1691683144.6083686-CDS-L-elsbetiae_contig2062:15149..152191691683144.6083686-CDS-L-elsbetiae_contig2062:15149..15219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 15150..15219 -
1622815849.3799741-CDS-L-elsbetiae_contig2062:16189..162571622815849.3799741-CDS-L-elsbetiae_contig2062:16189..16257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 16190..16257 -
1691683144.6175487-CDS-L-elsbetiae_contig2062:16189..162571691683144.6175487-CDS-L-elsbetiae_contig2062:16189..16257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 16190..16257 -
1622815849.3905885-CDS-L-elsbetiae_contig2062:17397..174091622815849.3905885-CDS-L-elsbetiae_contig2062:17397..17409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 17398..17409 -
1691683144.6278307-CDS-L-elsbetiae_contig2062:17397..174091691683144.6278307-CDS-L-elsbetiae_contig2062:17397..17409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2062 17398..17409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815849.4022338-UTR-L-elsbetiae_contig2062:17409..176631622815849.4022338-UTR-L-elsbetiae_contig2062:17409..17663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2062 17410..17663 -
1691683144.6383457-UTR-L-elsbetiae_contig2062:17409..176631691683144.6383457-UTR-L-elsbetiae_contig2062:17409..17663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2062 17410..17663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2062.6216.1

>prot_L-elsbetiae_contig2062.6216.1 ID=prot_L-elsbetiae_contig2062.6216.1|Name=mRNA_L-elsbetiae_contig2062.6216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MFYLKELKRPMLIPPSDFGPKFKDTIRRKLIEEVEGTSVGSLGFVITVMS
ITDDQIHMGTIEFDTGFANVVAVYRAICFRPFVNEVLDAAVSHVTELGFF
AEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSED
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mRNA from alignment at L-elsbetiae_contig2062:12248..17663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2062.6216.1 ID=mRNA_L-elsbetiae_contig2062.6216.1|Name=mRNA_L-elsbetiae_contig2062.6216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5416bp|location=Sequence derived from alignment at L-elsbetiae_contig2062:12248..17663- (Laminarionema elsbetiae ELsaHSoW15)
GTTCGGGCAAGGGGCAAGGAGGCGTAGGCCATTTACACCTGTACCCTTAC
GCACACAACCCTCTCTGATACAATATTTCTGGACTCTTCCTGGTTTCCAA
GGCAGGTGGATCTGTGTGAGACCAGAGGTCGCCCAGGGCACCAAAAAACA
CTCACTGGAGTGAGCGCAGAGAGGATAACCCATACGCAGCAGGCAGTGGT
CAGGTGCAGTGCGGGTAGATCGCGAGGAAGGCAGGCTTCAGCCCGATCAC
CAGCATGTTCTATCTTGTGAGTTACTGTATGTTGCTTCCCTCCTTGTTGC
GAGTTTGTTTGTTTGTTTGCTTGCTTGCTTGCAACCCGTACATACATATG
CAGTGTAGACTAGACGTAAATTTGAATTTTTGTACCTACTTCGCATGCGA
TGAATGATGAATCCAGCCGCGAGAGAGAAACGATCGGAGCATGGGAGCCT
TGTCCGTCTCCCCATGTTATACAAAAGCTTGTTGCTGTTGACATATATCC
AGTAGTTAACACGCGAACGTCCATGGATCACGCTCTGGAGAAAAGGTTCG
TGACAGCATCAAAACAAAGCTGCAGACAGAATTCCCCAGCAAACGACATG
GACCCTGTAGACTGCTTGCTGCCCCTTGCCCATCCACCGACAAGAGGCCT
CCCGGAATGCAGGCTGGGACACCACACCCTAGAAACATCGATAATACCAG
AATCGAGAGGGGTCTTAATATATATAGGATTTAGTATGGTCGTATACGTG
ACGTTAGTTACCACCCCCTCTCCTCCAATAAATCCGAGGGTCGGTGGGCC
CTGACGACGCCATATATAGGGTCATGACGACGCCATCCACACCAATTCCT
ATATAACAAACAAACATGGATAAGCCCACATTTTGGGTGTGTGGGGGAGG
GGAAGGGAGGGGTAGGGGGGGGGGGGGGGGGTGTCCCAGCCTGCATTCCG
GGAGGCCCCTTGTCACCGACGAGGAGGAGCACCGCAGAATGTTCCTGAGA
TCACCATATGGTCTGGTCCGGCTGAGACGCGTTGCGGGCTTCACTATAAG
TAATACACTTCAGAAGCATGAGGGGGCCGGTTGATGCCGCCTCATATTTG
AATTGAGGGCTATTATTCTCACCGCTGCTGCTTATATCTACTTTCCTTTG
ACAGGGGTTGCTAGTTTTTCGGTGATACATAGGTTGCCGCGCGAAAGGCG
GGCGACGCACGTCCGAATCTCCCGCATCCTCTTGCCCTGTGCCTTTCTTC
TTGTGTCTACCACGACCGTCGCTGACATCGAACAAGGAAGATTTGGTGTT
CAATTACTTATGCTCGTAGAATTGTCGCCGATCCCATCTACCGGCCTCCA
TTTGCTTGCTGCTGCTGCTGCTGCTGATGCCGCTGCTGCTCTGCCGCTCG
CTGCAGAAAGAGCTGAAGCGGCCGATGCTTATTCCGCCCTCGGACTTCGG
CCCAAAGTTCAAGGACACAATCCGGTGAGGAGAGAGGGTGAGAGGGGGGC
CCTTCCGTCTCAACGCGTATATATATATACTTCTATATATTTACAATTCG
TGAGCTGTGCGTGGCGTAGGCTCCCGCTACCTACTCTTTAAGCGCAGCCA
TTCTTTTGAAAAGGAGGTCATGATCTGTGGAGTAGGTGTGTGCTGGAGAC
TCCCCAGGGCCCCAGGTGCAATGGTGCGTGGTCTACGCTCTTCTGGCGCT
ACTATAATCTATGTAGTGTCCTCCAGAGAGGAATGCTTATACGTGAAGGA
AAGAGTAGCCTACATACTGCTTCCTTCGTTGCGCCAGTAAGCACGGGTGG
TGCTTTGGCATAATAAGCAGTCCCTCCTTTGATTGCACCACGACTCAAAT
TCCGGTTCATACCGACCTGTCTATCGTGGAACTAGGTACTAACTTGGAGA
CAACCTAACCTCCCATCTTCAAGAGAACAATCTCTGCTGAAAGAGGCCCT
GCATATGTATGTAGATCTCCGTAGATCTCCCCCAAGGCCCAGAAAAGTCC
TCCAGAAGTGCGATTCATAGATTACTGACGGAACTTCTTTCTGCTGGAAG
GCTTTTCTGGTCGCTGGTTTCAAAAACACGCTAAGGTTTGCAGCCGGCGG
CTGCAGTCCCCAGAGGCCTTCTTGGGACTGCTGGGCCGGCCACTTGCTGA
AGATGTTTATTTAAAAAAAAAAAAAAGTGCTGGTAAACGTGTGAGCACCC
GTAAGAAAAGAAACAAAAAGTGTTTTATCGTTTTTTGGAAGCTCGGATGG
AGTCCGTGCGCGGCAGAGTGTAATGGAGCATCGGTGATATCATTCATGCA
CATGTATGTACGTGTTGTTTCCGAGACATCCATCAACAGGTGGTCCGGAA
GGTCCAAGATGTTACGATTCCGGCACGCCTTGGCATCGACCCACTGCCTG
CTTGTGTTATATTTTTTATTATTCATCGTCGTCGTCGTCATCAGGCGAAA
GCTCATCGAGGAGGTGGAGGGGACGTCGGTAGGGTCTCTCGGGTTCGTCA
TCACCGTCATGTCGGTGAGTTTGAGACTATTTGTATCCATTCCGAAGATC
GACTGGAGTGATTCGCCCACAAGCGACGCAGGACGTCAGCAGAAGCAGGC
GCTTCGTCCGCTGGCGTGTTCCGAAACCTTAACTTCAAGTTTTAGTATAT
ACGAACAGCCAGCCACAAACCCCTTGCGGAGCCACATCCATGCGCAGAGC
CAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGTTGAGCAA
TGCACTCCCGGCAAGCTCATGATGATGTACTTCTGCCAGACCCGCCGGGT
CCTGTGCTACGGCGGTTCGAGACTCGATGTCCGCAGCAATTCATGGTGGC
TTAAAATAGATTCGCCTCATATGTGCATGCACATCGGCGCACGACGTAAG
GTTGGGCGGCTCGGGTTCAAAGGATGGATGGAGTAAGAGGGGCGACTCGA
TCCCTGGATTGTTGTACTTACAATGTAGAGTGATCGAGACCAGCACGGCC
TCAGCGGGATTCTGTGTCCCCACACATACCCATTCATGACGCACGAACCC
CCCCCCAAAAACCGTTCACGTACATAGCCCTCAAGGATCCCGCCGACAGC
ATATATTTAATGCCTTTATGTAGTGCCACCTGACAGTAGTCCAGTCTAGA
CGAGAGGCTTAACTCTGCGGAACAAATTCGTCTTTTATTTATACAGATGT
AATCGGGTTCTTTAGTTGTTCCCGCTGGCCCCTTGGCAACGCTGGCTGGT
ATCTTGGCACATACTTCGCAACGCGTTTCGTTGGCTCTTTACATGATGTA
CCGTAGGTGACACTAGATACCACACACCCCGGACCGATTTTTAGAGCTCG
ATTACTCCGCAACGAAGATGCCAGCACCAAACTACACATTTTCGGACAGC
GCTGGACTAGATATTTCCAAAGCCGCCCATTTCGGCACTAGCACTCCTCT
TGCTAGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCT
TGTGTCACCTACTCCATGCATGCATGCGCACTCCCTGTTGGTGTCGTCCC
AAAAATTATTTACGCAACATATTTTTTCTTTCAAAACGCAAAATTTCACA
CACAGATTACCGACGATCAGATTCACATGGGCACCATAGAGTTCGACACC
GGCTTCGCGAACGTGGTGGCGGTGTACCGCGCCATCTGCTTCCGGCCTTT
CGTGAACGAGGTGCTGGACGCCGCCGTGAGCCACGTCACCGAGCTCGGCT
TCTTTGCGGAAGTAGGCCCGCTCGAAGTTTTCGTCTCTCGCCTGGTGAGT
CGACTCAGGCAGGCAGGCAGGCAGACAGGCAGGCAGGCAGGCAGGCAGGC
AGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGTAGGCAGGCAGGCAGGCAC
ACATGGCGATTCTTTCAAGAGAGGTTCTAAGAAACGCATGGGTGGCGGCA
GTGGAATGAAATGAGGGTTGGGGGTTTAAGGGCGCAGGTGCAGGGTGGGG
GGTAACGCAGGCAGGCAGGCGGGCAGGCGGGCAGGCAAGCAGGCGGCCGG
AGAGTAGACGGCGAGTTGAACCGGCGAGTAGGCGGCGAGTTGGGTTATGC
CTCAGCGCCGCGGCCTGGTGAGTCAAGTCAGGCAGGCAGGCAGGCAGGCA
GGCAGGAGGCCGGAAAGCAGACGGCGAGTTGAGCCGGCAAGCGCACGGCG
AGTTGAGTTATCCCTCTCCGCGCCGCGGCCTGGCGCGCCGCTCGGTGCTT
TATGTATTTAGCGGAGCTGGCCCTATGTTTTCAATTATTTTTCTTTTTTA
AGTTCCATGCTGCATGGATATGTTTGTAGTAAATTGCCAGCGGTCTCTGC
GGTACATGCATAGATACGTACATAGAAGCATGTAACGTAAAGTCTGACGT
GGTGAGAACGGTTGTACCAGAGAGGCTAGTGCTGTCGTTGCAGACCCGCT
AGTCCCCTCCTTCTTAACCGTCCCAGACTGCAGTGGCACATCGGGTTCAA
TTTTGTGAGCTCTTTCGGAGGTAGCCTCCGATCGGCAGGCACGCCGAAAA
AACGGAAAAAAACGGGATTACCTATGTAGTTTGTACTCGCTCACGTGGCT
GAGCGGATCATAGGGGTTCGTGGGTTGATGCCTGCCTTGCCCTATGTACC
ACAGATGACACAATATACCACCCCCCTGAACATATTTTCAAAGCACGATC
CCTCCGTAGCGAAGAGGGCGCCAGCACTAAGCGAAACATTTTCGGGCAGC
CCTCCTCGACTTTATTTAGAGTGGATTTTTCCAACGCCTCCCCATTTCGG
CACTGGCCCTCTCTCGCTGGGGAAGAATCGAGCTTTGAAAATCTGTTGCA
GGCGGGCGGGGGGGGGTATCTTGTGTCACCTGCGGTATGCTCTTCTTTGA
GTTTTTCACTCCCCCTTTTTGCGCATATCTCCTTCAGAGATGTTATCGCG
TTGTGGGACCGCACTCGCGTTGTTGGACCGCCTTCGCGAAGGATAATGAC
AGGGGTTCCGTAACCCTAACCCCAAACCGACCCCCCCCCTTAATCTAGCC
GTTTCCATACTTTTATCCCATATGATTTCTTCCAGTAAAACCTGCGAAGG
CTACTGGCGCTTTGTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCTGNNNNNN
NNNNCTCCCTTTCTCTTCTTTTTTCCCCTCTGTTTTTTTCCCCGAAAACC
CCCAGGGGCGCCCCGCGCTCTTTTGCCCCCCCCCCCCCCCCCCCCAAACA
CACACACACACACACACTCTAAAATCCTTGGTTCTGCGTGGTATTGGCAG
GGTATGCCGGACGACATTGCCGGAGGCTACGACCCGGTGGGAGACATGTG
GGTCTCCTCGGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2062:12248..17663-

>mRNA_L-elsbetiae_contig2062.6216.1 ID=mRNA_L-elsbetiae_contig2062.6216.1|Name=mRNA_L-elsbetiae_contig2062.6216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig2062:12248..17663- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTATCTTATGTTCTATCTTAAAGAGCTGAAGCGGCCGATGCTTAT
TCCGCCCTCGGACTTCGGCCCAAAGTTCAAGGACACAATCCGAAAGAGCT
GAAGCGGCCGATGCTTATTCCGCCCTCGGACTTCGGCCCAAAGTTCAAGG
ACACAATCCGGCGAAAGCTCATCGAGGAGGTGGAGGGGACGTCGGTAGGG
TCTCTCGGGTTCGTCATCACCGTCATGTCGGCGAAAGCTCATCGAGGAGG
TGGAGGGGACGTCGGTAGGGTCTCTCGGGTTCGTCATCACCGTCATGTCG
ATTACCGACGATCAGATTCACATGGGCACCATAGAGTTCGACACCGGCTT
CGCGAACGTGGTGGCGGTGTACCGCGCCATCTGCTTCCGGCCTTTCGTGA
ACGAGGTGCTGGACGCCGCCGTGAGCCACGTCACCGAGCTCGGCTTCTTT
GCGGAAGTAGGCCCGCTCGAAGTTTTCGTCTCTCGCCTGATTACCGACGA
TCAGATTCACATGGGCACCATAGAGTTCGACACCGGCTTCGCGAACGTGG
TGGCGGTGTACCGCGCCATCTGCTTCCGGCCTTTCGTGAACGAGGTGCTG
GACGCCGCCGTGAGCCACGTCACCGAGCTCGGCTTCTTTGCGGAAGTAGG
CCCGCTCGAAGTTTTCGTCTCTCGCCTGGGTATGCCGGACGACATTGCCG
GAGGCTACGACCCGGTGGGAGACATGTGGGTCTCCTCGGAGGACGGTATG
CCGGACGACATTGCCGGAGGCTACGACCCGGTGGGAGACATGTGGGTCTC
CTCGGAGGAC
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