mRNA_L-elsbetiae_contig2060.6212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2060.6212.1
Unique NamemRNA_L-elsbetiae_contig2060.6212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2060.6212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2060contigL-elsbetiae_contig2060:16616..16921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.8930671-CDS-L-elsbetiae_contig2060:16615..169211622815848.8930671-CDS-L-elsbetiae_contig2060:16615..16921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2060 16616..16921 +
1691683144.2303958-CDS-L-elsbetiae_contig2060:16615..169211691683144.2303958-CDS-L-elsbetiae_contig2060:16615..16921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2060 16616..16921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2060.6212.1prot_L-elsbetiae_contig2060.6212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2060 16616..16921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2060.6212.1

>prot_L-elsbetiae_contig2060.6212.1 ID=prot_L-elsbetiae_contig2060.6212.1|Name=mRNA_L-elsbetiae_contig2060.6212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MLQYDFDKRSGWVSTILYQCIAEGSEEGLVCLHTADRLGGRKYRRRHKIP
HPLDRFSKLDSSLPNKKEDCQESKEVVALEISSRGLSENVSFGAGNLFVR
E*
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mRNA from alignment at L-elsbetiae_contig2060:16616..16921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2060.6212.1 ID=mRNA_L-elsbetiae_contig2060.6212.1|Name=mRNA_L-elsbetiae_contig2060.6212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig2060:16616..16921+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTACAATATGATTTTGATAAGAGGTCGGGTTGGGTATCTACGATTTT
GTACCAGTGTATAGCCGAGGGCAGTGAGGAAGGGTTAGTGTGTCTACATA
CAGCAGATCGCCTTGGAGGCCGGAAGTATCGTAGGCGACACAAGATACCA
CACCCCCTGGACAGATTTTCAAAGCTCGACTCCTCCCTCCCCAACAAGAA
AGAAGATTGTCAAGAGTCAAAAGAGGTGGTGGCGTTGGAAATATCTAGTC
GAGGGCTTTCCGAAAATGTGTCGTTTGGTGCTGGCAACCTTTTCGTTAGG
GAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2060:16616..16921+

>mRNA_L-elsbetiae_contig2060.6212.1 ID=mRNA_L-elsbetiae_contig2060.6212.1|Name=mRNA_L-elsbetiae_contig2060.6212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig2060:16616..16921+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTACAATATGATTTTGATAAGAGGTCGGGTTGGGTATCTACGATTTT
GTACCAGTGTATAGCCGAGGGCAGTGAGGAAGGGTTAGTGTGTCTACATA
CAGCAGATCGCCTTGGAGGCCGGAAGTATCGTAGGCGACACAAGATACCA
CACCCCCTGGACAGATTTTCAAAGCTCGACTCCTCCCTCCCCAACAAGAA
AGAAGATTGTCAAGAGTCAAAAGAGGTGGTGGCGTTGGAAATATCTAGTC
GAGGGCTTTCCGAAAATGTGTCGTTTGGTGCTGGCAACCTTTTCGTTAGG
GAGTAAATGTTACAATATGATTTTGATAAGAGGTCGGGTTGGGTATCTAC
GATTTTGTACCAGTGTATAGCCGAGGGCAGTGAGGAAGGGTTAGTGTGTC
TACATACAGCAGATCGCCTTGGAGGCCGGAAGTATCGTAGGCGACACAAG
ATACCACACCCCCTGGACAGATTTTCAAAGCTCGACTCCTCCCTCCCCAA
CAAGAAAGAAGATTGTCAAGAGTCAAAAGAGGTGGTGGCGTTGGAAATAT
CTAGTCGAGGGCTTTCCGAAAATGTGTCGTTTGGTGCTGGCAACCTTTTC
GTTAGGGAGTAA
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