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Homology
BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE) HSP 1 Score: 313 bits (801), Expect = 1.030e-101 Identity = 215/307 (70.03%), Postives = 232/307 (75.57%), Query Frame = 1
Query: 10 RQVPTWIYFGFLFLTRKEECLGFVASPPAQHRXXXXXXXXXXXXXXXXXXXXXXRRNAPTAAAPXXXXAAKISSAAARAPARAIAAPSSSRTALHATGFGPPPPKRPRRPRASPDPSAYHPNDXXXXXXXXXXXD-----EPFPGARDAKKVREPRGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKEEASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGE 915
R++P + FGFL LTRKE C+GFVA+ AQ XXXXXXXXXXXXXXXXXXX XXX +A A RAIA SRTAL+ATGFGP XXXXXXXXXXX EPFP DAKKV EPRGIGTLFESEDE+IRELSSEEY +LLRDWAPIASFASVEAID +VKEEA+CILTVLRGMA+W+PKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSED+GVVVEWICGNPVTLGIPGNAV WL +G+ ALCGKRLDLPVTIS +ARGE
Sbjct: 5 RRIPVRLVFGFLLLTRKEGCVGFVANLAAQQHPQQXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXTATRTAAHRAIA----SRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDAGEPFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 299
BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.800e-53 Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 1
Query: 634 MAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGEG 918
MA+W+PKRN+DYTK+GSKWSFGAPIGAIKGGQVDALACL+VSED+GVVVEWICGNPVTLGIPGNAV WL +G+ ALCGKRLDLPVTIS +ARGEG
Sbjct: 1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 95
BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC) HSP 1 Score: 143 bits (361), Expect = 2.840e-37 Identity = 68/145 (46.90%), Postives = 100/145 (68.97%), Query Frame = 1
Query: 460 RGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKEEASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTI 894
+ +GTLF+SEDE IREL S+E+LD +R WAP+++F E + +EE + VL+ MA+W+P R+ Y W FGAP+GA KGGQ+DA+ACL++SE +GVVV +I NP+ +G+ GNA WL +G+ +C +RL + + I
Sbjct: 67 QALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEG-NASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDI 210
BLAST of mRNA_L-elsbetiae_contig206.6211.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA) HSP 1 Score: 117 bits (292), Expect = 8.750e-29 Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 634 MAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISARARGEGGDDFE 933
M +W P R D+ + GS W+F AP+ A K G +DA+ACL+V+E++G+ + W+C NP LG+PGN++AWL +G++ L GKRLD+ V ARGE DD E
Sbjct: 1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARGELADDDE 100
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-10_003670.1 |
| Exons | 3 |
| Model size | 1074 |
| Cds size | 1074 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815848.835314-CDS-L-elsbetiae_contig206:37323..37668 | 1622815848.835314-CDS-L-elsbetiae_contig206:37323..37668 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 37324..37668 - |
| 1691683144.1942818-CDS-L-elsbetiae_contig206:37323..37668 | 1691683144.1942818-CDS-L-elsbetiae_contig206:37323..37668 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 37324..37668 - |
| 1622815848.8523595-CDS-L-elsbetiae_contig206:38340..38430 | 1622815848.8523595-CDS-L-elsbetiae_contig206:38340..38430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 38341..38430 - |
| 1691683144.2037292-CDS-L-elsbetiae_contig206:38340..38430 | 1691683144.2037292-CDS-L-elsbetiae_contig206:38340..38430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 38341..38430 - |
| 1622815848.86368-CDS-L-elsbetiae_contig206:39244..39883 | 1622815848.86368-CDS-L-elsbetiae_contig206:39244..39883 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 39245..39883 - |
| 1691683144.2171307-CDS-L-elsbetiae_contig206:39244..39883 | 1691683144.2171307-CDS-L-elsbetiae_contig206:39244..39883 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig206 39245..39883 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig206.6211.1 >prot_L-elsbetiae_contig206.6211.1 ID=prot_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
MVGRQVPTWIYFGFLFLTRKEECLGFVASPPAQHRYYYCNNHHAQPSSSS
SSPLIVHRRNAPTAAAPAAAPAAKISSAAARAPARAIAAPSSSRTALHAT
GFGPPPPKRPRRPRASPDPSAYHPNDGDADDGDGGGGDEPFPGARDAKKV
REPRGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEAIDNEVKE
EASCILTVLRGMAQWEPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACL
QVSEDEGVVVEWICGNPVTLGIPGNAVAWLEQGVQALCGKRLDLPVTISA
RARGEGGDDFEAGGGGGGGGGRVGGGGGGKNGRKADSRRNSGSSSGGRRK
GGSKKRR* back to topmRNA from alignment at L-elsbetiae_contig206:37324..39883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig206.6211.1 ID=mRNA_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2560bp|location=Sequence derived from alignment at L-elsbetiae_contig206:37324..39883- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCCGACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCT
CACGAGAAAGGAGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAAC
ACCGCTACTACTACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCG
TCCTCGCCGTTGATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACC
AGCAGCAGCACCAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGG
CGAGAGCAATAGCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACG
GGTTTCGGGCCGCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCC
CGATCCCAGCGCCTACCACCCGAACGACGGGGACGCCGACGACGGCGACG
GTGGCGGCGGCGACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTG
CGAGAGCCGCGCGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGAT
CCGCGAGCTCTCGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGC
CGATCGCGTCGTTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAG
GAGGCGTCCTGCATCCTGACAGTCCTGAGAGGCATGGCGGTAAGAAACAG
AAAAAATCGATTACATGCATGATACATATGTACTTCCACTTCGGAAAGTA
TGTTGTCGTCTCGACTATGATGTGCCTAAGTTCTACCGTTGTCCCCCGGT
GGTGGAAACCCACCTCATCTCTGGTCTCAGGATGTGTGATATTTATCTAG
ATATCATTTCGGAGTCCGAGGGTATGTATGTAGGATCCCTCGACCCCCGG
TGCTTCTCGCAGACGACAACGCTCGTACTTGCTCAGCAGGGCGAAGGCTC
GATCGAGCGCAAGGCTCCGCCTCGCAGTAAGAATATATATAAGCGACGGG
GTGATTCAAGGAACGGCTATACACCGCAGCATTGTCGTGGCGGAGAGAAG
AGACGGGATCTGACCAAAACATAACATGCTTCTTGTTCCTGTCTTTGGAT
TGGATCGACCGCCTCGTCGTGGAGTGAGTGTAAAGCGGTGTGGCATCTGA
GTCGGCATTTCTGGCGAAGCCGCAACAGAGCAGAACAGCAGCAGTACACA
GCAGCCGCCAAAAAAGATCGCCTCCCTCGCTGGTTTGTGGACGGCAAGAT
GAGGGGAGGAAGGCGGCGGCCCGCAAAGCCAGCCAGTCGCTCGTGCCATA
TCTGAAACCCTCGTTGAACCCTGGGGGGCGAAGGTGGCGCTGTGTATGCA
TCCCTCGCCTGCAGCGTTTATTCAGCAAAGCGCGGCAAGCTGCTCTACTG
CTGTGTGCCTGTGCTGTGTGTGCACAGCAGGCTGGCTCTTCACGGCATGC
GGGCGCGCCTGTTGCCTTGTCCTCGTGCGCGTTCTGTCTCGCTTTTCTGA
CAGCAATGGGAGCCCAAGCGCAACGCCGACTACACCAAGCTGGGGTCGAA
GTGGTCCTTCGGGGCGCCGATCGGAGCCATCAAGGGCGGCCAGGTGGGGG
CCCTTTTCTGGTTTTGTCATTCCTCGACCACCCCGTGTGCGCCCCCTTAA
AATCTTGTGATGCGGCGTTAGCTGTTTGCACAGGACTGTCTGAAGCGGAG
GTCTGAATCCCGTGGCTGGTGAAGAGTAATGGATATTCGAAGCACGCACC
CTCGTCTTCTTTGGCACACCCGTGGGTTATACATACAATATACGTACGTC
AAGGTGTACACCCCTGCAGTAGATGCTCGATGAATCGGGCTGCATGCCCC
ATGACCGCTGCTGGTATTGCGTTTCGATTCGCTTGTCGGGGAGGGGACTT
TGAAGCAAAAACCTCAAGCCTCCGGGCGGGCGTCTTGGGCATTTCTGACT
CTCATGCGTACAAGTTTCCCTGGGTTGCTGTGTTGTCACACCGGAAATTA
AGTTTATCTAGGAAAATAACCCAAACCCTAACCCCAGCCACCGACCCCCC
TTTTCCGGTTTCCATACTTATAATTTTATCTAACGTAATATGTTAGCTGA
AGACGAAAACCCTGCATAGACTACCGGGGACACCAACCAAACAACCAACC
AACCAACCAACCAACCCCCCCCCCATCCAACGTTGCGCTCGCTTTGATCG
CGCTTTTGGATGTGTCTTCGTGCACACGTGTAAATACGCATGTGCAAATG
CCCCTTGTGCGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGA
CGAGGGCGTCGTCGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCA
TCCCCGGCAACGCCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGC
GGGAAGCGGCTCGACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGA
GGGAGGGGACGACTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGC
GAGTTGGAGGTGGAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGA
AGAAATAGCGGGAGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAA
GCGCCGATAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig206:37324..39883- >mRNA_L-elsbetiae_contig206.6211.1 ID=mRNA_L-elsbetiae_contig206.6211.1|Name=mRNA_L-elsbetiae_contig206.6211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig206:37324..39883- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCCGACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCT
CACGAGAAAGGAGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAAC
ACCGCTACTACTACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCG
TCCTCGCCGTTGATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACC
AGCAGCAGCACCAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGG
CGAGAGCAATAGCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACG
GGTTTCGGGCCGCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCC
CGATCCCAGCGCCTACCACCCGAACGACGGGGACGCCGACGACGGCGACG
GTGGCGGCGGCGACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTG
CGAGAGCCGCGCGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGAT
CCGCGAGCTCTCGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGC
CGATCGCGTCGTTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAG
GAGGCGTCCTGCATCCTGACAGTCCTGAGAGGCATGGCGATGGTGGGCCG
ACAGGTACCAACCTGGATTTACTTCGGCTTCTTGTTTCTCACGAGAAAGG
AGGAATGCCTCGGCTTCGTGGCAAGCCCACCGGCCCAACACCGCTACTAC
TACTGTAACAATCATCATGCGCAGCCCTCCTCCTCCTCGTCCTCGCCGTT
GATAGTCCACCGAAGAAATGCACCGACAGCAGCAGCACCAGCAGCAGCAC
CAGCAGCAAAAATATCATCTGCAGCAGCAAGAGCGCCGGCGAGAGCAATA
GCAGCACCATCTTCTTCGAGAACAGCGTTGCACGCCACGGGTTTCGGGCC
GCCGCCCCCAAAACGGCCACGGCGGCCGCGGGCCTCGCCCGATCCCAGCG
CCTACCACCCGAACGACGGGGACGCCGACGACGGCGACGGTGGCGGCGGC
GACGAGCCGTTCCCCGGGGCGAGAGACGCGAAGAAGGTGCGAGAGCCGCG
CGGGATTGGGACGCTGTTCGAGTCGGAGGACGAGGTGATCCGCGAGCTCT
CGAGCGAGGAGTACCTGGACCTGCTGCGGGACTGGGCGCCGATCGCGTCG
TTCGCGTCCGTCGAGGCCATCGACAACGAGGTCAAGGAGGAGGCGTCCTG
CATCCTGACAGTCCTGAGAGGCATGGCGCAATGGGAGCCCAAGCGCAACG
CCGACTACACCAAGCTGGGGTCGAAGTGGTCCTTCGGGGCGCCGATCGGA
GCCATCAAGGGCGGCCAGCAATGGGAGCCCAAGCGCAACGCCGACTACAC
CAAGCTGGGGTCGAAGTGGTCCTTCGGGGCGCCGATCGGAGCCATCAAGG
GCGGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGACGAGGGC
GTCGTCGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCATCCCCGG
CAACGCCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGCGGGAAGC
GGCTCGACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGAGGGAGGG
GACGACTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGCGAGTTGG
AGGTGGAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGAAGAAATA
GCGGGAGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAAGCGCCGA
TAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGACGAGGGCGTCGT
CGTGGAGTGGATCTGCGGTAACCCCGTCACCCTCGGCATCCCCGGCAACG
CCGTGGCGTGGCTCGAGCAGGGCGTCCAGGCCCTCTGCGGGAAGCGGCTC
GACCTTCCGGTGACGATATCGGCGAGGGCGAGAGGGGAGGGAGGGGACGA
CTTTGAGGCGGGAGGGGGCGGAGGTGGCGGCGGCGGGCGAGTTGGAGGTG
GAGGCGGGGGTAAGAACGGGAGGAAGGCGGATAGCAGAAGAAATAGCGGG
AGTAGCAGCGGTGGCAGGAGGAAGGGCGGCTCGAAGAAGCGCCGATAG back to top
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