mRNA_L-elsbetiae_contig2057.6202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2057.6202.1
Unique NamemRNA_L-elsbetiae_contig2057.6202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2057.6202.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-5
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  150 CTHVGCAKRPLFGVAGTKTREFCGGHAKEGMVNLDSKK 263
            C H  C KRP +GVAG+K REFC  HA++GMVN+++K+
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig2057.6202.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.360e-5
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  150 CTHVGCAKRPLFGVAGTKTREFCGGHAKEGMVNLDSKK 263
            C H  C KRP +GVAG+K REFC  HA++GMVN+++K+
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2057.6202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI1.390e-557.89EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE3.360e-557.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2057contigL-elsbetiae_contig2057:16314..18663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1678
Cds size1257
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2057.6202.1prot_L-elsbetiae_contig2057.6202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2057 17273..18529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815847.8865037-UTR-L-elsbetiae_contig2057:16313..165661622815847.8865037-UTR-L-elsbetiae_contig2057:16313..16566Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 16314..16566 -
1691683143.4964213-UTR-L-elsbetiae_contig2057:16313..165661691683143.4964213-UTR-L-elsbetiae_contig2057:16313..16566Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 16314..16566 -
1622815847.8966177-UTR-L-elsbetiae_contig2057:17238..172721622815847.8966177-UTR-L-elsbetiae_contig2057:17238..17272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 17239..17272 -
1691683143.513435-UTR-L-elsbetiae_contig2057:17238..172721691683143.513435-UTR-L-elsbetiae_contig2057:17238..17272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 17239..17272 -
1622815847.9167216-UTR-L-elsbetiae_contig2057:18529..186631622815847.9167216-UTR-L-elsbetiae_contig2057:18529..18663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 18530..18663 -
1691683143.545099-UTR-L-elsbetiae_contig2057:18529..186631691683143.545099-UTR-L-elsbetiae_contig2057:18529..18663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2057 18530..18663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815847.9062269-CDS-L-elsbetiae_contig2057:17272..185291622815847.9062269-CDS-L-elsbetiae_contig2057:17272..18529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2057 17273..18529 -
1691683143.526151-CDS-L-elsbetiae_contig2057:17272..185291691683143.526151-CDS-L-elsbetiae_contig2057:17272..18529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2057 17273..18529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2057.6202.1

>prot_L-elsbetiae_contig2057.6202.1 ID=prot_L-elsbetiae_contig2057.6202.1|Name=mRNA_L-elsbetiae_contig2057.6202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=419bp
MPPRICTHVGCAKRPLFGVAGTKTREFCGGHAKEGMVNLDSKKCAHQGCS
TRPSFGIPGTKKREFCRVHAREGNVNICRKKCARQGCSKEQSFGVAGTKK
REFCGGHAKEGMTNLSSNKCAHRSCSKVPSFGVAGTKKREFCGGHAEEGM
ANLDNKECARRGCTKVPSFGVVGAKKREFCSGHAKDGMIYLANTNKCAHP
CCSKDPSYGVAGTRKREFCRGHAKNGMVCVRGKTCAHQGCSKRPSLGVTG
TRSPEYCKGHAVEGMINVTNKRCAQRGCTKYSSYGVPGTKKRNYCAGHAK
EGMVSLRAIADLANATVVKAEEVVLISGVVARNESGGMDSATVGNGRSKR
KGRASRQCSGDGGGGSTSSSSNSKRKGGKRARKAIDDDVVILEPEDQAAV
AEDKAKPRASVAIKPEQQ*
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mRNA from alignment at L-elsbetiae_contig2057:16314..18663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2057.6202.1 ID=mRNA_L-elsbetiae_contig2057.6202.1|Name=mRNA_L-elsbetiae_contig2057.6202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2350bp|location=Sequence derived from alignment at L-elsbetiae_contig2057:16314..18663- (Laminarionema elsbetiae ELsaHSoW15)
CAACTTGGGCGGACCACGGGCGCTACTTCTCTGGGTCTAAGTACTACCGT
ACAACAGCCGCCGTGTTCCGCTGGGCCAACTGCTACGTCTGGAATTCACC
GGAAGATATCCAAGGCAACACACGCTCTGCACTCATGCCGCCCAGGATAT
GCACGCATGTAGGATGCGCCAAGCGTCCGCTTTTTGGTGTAGCGGGGACC
AAAACGCGAGAGTTCTGCGGTGGGCATGCCAAGGAAGGAATGGTCAACCT
TGATAGCAAAAAGTGCGCACACCAGGGCTGCAGCACGCGGCCATCGTTTG
GGATACCGGGGACTAAGAAGCGAGAATTCTGCCGCGTACATGCCAGGGAA
GGAAATGTGAACATTTGCAGGAAAAAATGCGCACGCCAGGGGTGCAGCAA
GGAGCAATCGTTTGGCGTTGCGGGAACCAAGAAGCGAGAGTTCTGCGGTG
GACATGCCAAGGAAGGAATGACAAACCTTTCTAGCAACAAGTGCGCACAC
CGGAGTTGCAGCAAGGTACCGTCGTTTGGTGTTGCGGGAACCAAGAAGCG
AGAATTCTGTGGTGGACATGCCGAAGAAGGAATGGCCAACCTTGATAACA
AGGAGTGTGCACGCCGGGGTTGCACCAAGGTACCGTCGTTCGGCGTCGTG
GGAGCTAAGAAGCGAGAGTTCTGCAGCGGGCATGCCAAGGACGGGATGAT
ATATCTCGCCAACACCAATAAGTGCGCACATCCGTGTTGCAGCAAGGATC
CGTCGTATGGCGTTGCGGGAACGAGGAAACGAGAGTTCTGCCGCGGACAT
GCCAAGAATGGGATGGTCTGCGTTCGTGGCAAGACTTGTGCTCACCAGGG
CTGCAGCAAGCGGCCATCGTTAGGCGTAACAGGAACCAGAAGTCCAGAGT
ACTGCAAGGGACATGCTGTGGAAGGGATGATCAACGTCACCAACAAGAGG
TGCGCACAGCGGGGATGCACCAAGTACTCGTCGTATGGCGTCCCGGGAAC
CAAGAAACGAAATTATTGCGCAGGACACGCCAAGGAGGGGATGGTTTCCT
TGCGGGCCATCGCAGATCTTGCAAACGCCACCGTTGTAAAGGCGGAGGAA
GTCGTCCTTATATCTGGCGTTGTTGCCCGTAACGAGTCTGGTGGGATGGA
CAGCGCTACCGTAGGCAACGGACGAAGCAAGCGAAAAGGTCGCGCATCCA
GACAGTGCAGCGGCGACGGCGGCGGCGGCAGCACCAGCAGCAGCAGCAAC
TCGAAACGGAAAGGCGGCAAGCGAGCGCGTAAAGCAATCGACGATGATGT
CGTTATTCTAGAACCCGAAGACCAGGCAGCAGTCGCAGAGGATAAGGCGA
AACCGCGAGCAAGCGTTGCGATCAAGCCTGAACAGCAGTAGAATGGCAAT
GTCTGAAGTAAGTGTCAACCCGCAGGTGGGATATGTGTTGGAGCTTTTCC
AAGCCATTGACATGAGCTCAATTTTGGGGGTAAACTGCAGTACGTAAATA
CCGTATGCAAGGACTTGATGGGGGCGGCTGCCCGCGGCGATGCATATACA
TATGTACACACGTTGGTCATGTTGTTGCACGCCGTTGTGGGTTATTTTCC
ATAAATATGGCATTTCCGTCCTAACCTTGTTAGCAAAGCTTGCCCCTTCA
AGTTCAAGCAATAAAAACAAGGAAGGATATCAATGAACTGGCCCAGAACG
AGTGGCAAACGGGAGTATCATGTTGTGTCTTTACATTACCTTGCGAAAAC
CCGGCGTTGATGCCTCACCAGCATCAACAGCTGGCAAAAATACCGCGCGA
AAGGACCTTGGATACGTACTTGATACGTACTTGCTTTCGTGGCGACGGTC
CTGCTGTGTGGATGGGTAAGCCTTACCTAGGCTTTATCTTGATTTCATGC
CTCTCCAAAAGCAAGAAAAACATGTACTGGAGTTACTAGGTGCTCTCAAC
AAACGGTTCATTGTAAGGGTCCGGGTTAACCAAAATATTTGGTTTGCTGT
CTTGGAATCAACCACCTTAGAGTCTCACTGTCAGCTTAACGCGCACGTCA
CCGCCCCCCCCTCCCCCTTCCGCTGGTGTCTTACGAAACCAAAACAGGGA
GCGAACGCCTCGGTGTAAGCACCATGGCGAGCTACGTCGGAACCTTTTGA
GCTCTTGTCGTGACTTGCGTCCCATCCCGTTATTGCCGGGCATTTCAAGC
CAAGCATGACCTGAGGTGGTGTGGAGGTGTCGCTCTGCGTATTTCACCCC
AGCGTTGAAAGATGCTGCAGCATCAATCTATTCGGATGAGTGAGAGAAAC
GATACCTGTTCTTGAGTCCGTTAGATAACTTTGACAAATTTCAGTTTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2057:16314..18663-

>mRNA_L-elsbetiae_contig2057.6202.1 ID=mRNA_L-elsbetiae_contig2057.6202.1|Name=mRNA_L-elsbetiae_contig2057.6202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2514bp|location=Sequence derived from alignment at L-elsbetiae_contig2057:16314..18663- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCCAGGATATGCACGCATGTAGGATGCGCCAAGCGTCCGCTTTT
TGGTGTAGCGGGGACCAAAACGCGAGAGTTCTGCGGTGGGCATGCCAAGG
AAGGAATGGTCAACCTTGATAGCAAAAAGTGCGCACACCAGGGCTGCAGC
ACGCGGCCATCGTTTGGGATACCGGGGACTAAGAAGCGAGAATTCTGCCG
CGTACATGCCAGGGAAGGAAATGTGAACATTTGCAGGAAAAAATGCGCAC
GCCAGGGGTGCAGCAAGGAGCAATCGTTTGGCGTTGCGGGAACCAAGAAG
CGAGAGTTCTGCGGTGGACATGCCAAGGAAGGAATGACAAACCTTTCTAG
CAACAAGTGCGCACACCGGAGTTGCAGCAAGGTACCGTCGTTTGGTGTTG
CGGGAACCAAGAAGCGAGAATTCTGTGGTGGACATGCCGAAGAAGGAATG
GCCAACCTTGATAACAAGGAGTGTGCACGCCGGGGTTGCACCAAGGTACC
GTCGTTCGGCGTCGTGGGAGCTAAGAAGCGAGAGTTCTGCAGCGGGCATG
CCAAGGACGGGATGATATATCTCGCCAACACCAATAAGTGCGCACATCCG
TGTTGCAGCAAGGATCCGTCGTATGGCGTTGCGGGAACGAGGAAACGAGA
GTTCTGCCGCGGACATGCCAAGAATGGGATGGTCTGCGTTCGTGGCAAGA
CTTGTGCTCACCAGGGCTGCAGCAAGCGGCCATCGTTAGGCGTAACAGGA
ACCAGAAGTCCAGAGTACTGCAAGGGACATGCTGTGGAAGGGATGATCAA
CGTCACCAACAAGAGGTGCGCACAGCGGGGATGCACCAAGTACTCGTCGT
ATGGCGTCCCGGGAACCAAGAAACGAAATTATTGCGCAGGACACGCCAAG
GAGGGGATGGTTTCCTTGCGGGCCATCGCAGATCTTGCAAACGCCACCGT
TGTAAAGGCGGAGGAAGTCGTCCTTATATCTGGCGTTGTTGCCCGTAACG
AGTCTGGTGGGATGGACAGCGCTACCGTAGGCAACGGACGAAGCAAGCGA
AAAGGTCGCGCATCCAGACAGTGCAGCGGCGACGGCGGCGGCGGCAGCAC
CAGCAGCAGCAGCAACTCGAAACGGAAAGGCGGCAAGCGAGCGCGTAAAG
CAATCGACGATGATGTCGTTATTCTAGAACCCGAAGACCAGGCAGCAGTC
GCAGAGGATAAGGCGAAACCGCGAGCAAGCGTTGCGATCAAGCCTGAACA
GCAGTAGATGCCGCCCAGGATATGCACGCATGTAGGATGCGCCAAGCGTC
CGCTTTTTGGTGTAGCGGGGACCAAAACGCGAGAGTTCTGCGGTGGGCAT
GCCAAGGAAGGAATGGTCAACCTTGATAGCAAAAAGTGCGCACACCAGGG
CTGCAGCACGCGGCCATCGTTTGGGATACCGGGGACTAAGAAGCGAGAAT
TCTGCCGCGTACATGCCAGGGAAGGAAATGTGAACATTTGCAGGAAAAAA
TGCGCACGCCAGGGGTGCAGCAAGGAGCAATCGTTTGGCGTTGCGGGAAC
CAAGAAGCGAGAGTTCTGCGGTGGACATGCCAAGGAAGGAATGACAAACC
TTTCTAGCAACAAGTGCGCACACCGGAGTTGCAGCAAGGTACCGTCGTTT
GGTGTTGCGGGAACCAAGAAGCGAGAATTCTGTGGTGGACATGCCGAAGA
AGGAATGGCCAACCTTGATAACAAGGAGTGTGCACGCCGGGGTTGCACCA
AGGTACCGTCGTTCGGCGTCGTGGGAGCTAAGAAGCGAGAGTTCTGCAGC
GGGCATGCCAAGGACGGGATGATATATCTCGCCAACACCAATAAGTGCGC
ACATCCGTGTTGCAGCAAGGATCCGTCGTATGGCGTTGCGGGAACGAGGA
AACGAGAGTTCTGCCGCGGACATGCCAAGAATGGGATGGTCTGCGTTCGT
GGCAAGACTTGTGCTCACCAGGGCTGCAGCAAGCGGCCATCGTTAGGCGT
AACAGGAACCAGAAGTCCAGAGTACTGCAAGGGACATGCTGTGGAAGGGA
TGATCAACGTCACCAACAAGAGGTGCGCACAGCGGGGATGCACCAAGTAC
TCGTCGTATGGCGTCCCGGGAACCAAGAAACGAAATTATTGCGCAGGACA
CGCCAAGGAGGGGATGGTTTCCTTGCGGGCCATCGCAGATCTTGCAAACG
CCACCGTTGTAAAGGCGGAGGAAGTCGTCCTTATATCTGGCGTTGTTGCC
CGTAACGAGTCTGGTGGGATGGACAGCGCTACCGTAGGCAACGGACGAAG
CAAGCGAAAAGGTCGCGCATCCAGACAGTGCAGCGGCGACGGCGGCGGCG
GCAGCACCAGCAGCAGCAGCAACTCGAAACGGAAAGGCGGCAAGCGAGCG
CGTAAAGCAATCGACGATGATGTCGTTATTCTAGAACCCGAAGACCAGGC
AGCAGTCGCAGAGGATAAGGCGAAACCGCGAGCAAGCGTTGCGATCAAGC
CTGAACAGCAGTAG
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