mRNA_L-elsbetiae_contig2057.6200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2057.6200.1 vs. uniprot
Match: D8LFH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH0_ECTSI) HSP 1 Score: 288 bits (738), Expect = 8.050e-89 Identity = 185/251 (73.71%), Postives = 205/251 (81.67%), Query Frame = 1 Query: 136 SPPLMMLDDPPLGEGWDENGNDLSKAANDAVRQAYCGTWMAKLRQEAAAIRAGDHPSVMRRSKLTMKASKQRMDMTERNAKRQRDIAAKLYQNEVERINEAHDTAIEQTRERLLAEANEEIRRSKNQMEGCKEDMNRMNTRHTRGNAKEGSVQDFWSASITGSKTNGS-KRPLYAISIVLDDDVLSEDIDLLRYSDRESSNRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGAENGRTRRAPGWRRDE 885 S P +L+DPPLGEGWDE+GNDLSKAAND VR+ +C W+AKLRQEAAAIRAGDHP+VMRRSKLTM ASK+R +MTER+AKRQR IAA LYQ EV+RI+ A++TAIEQTRERLL EANEEIRRSKN MEG KED+NRMNTRHTRGNAK V D W S T SKTNG+ KRPL AIS+VL+DD LSEDID LRYSDR+ GGXXXXXXXXXXXXXXXXXXXX +ENGR RR PGWRRDE Sbjct: 69 SSPSSVLEDPPLGEGWDEHGNDLSKAANDDVRKVHCEAWIAKLRQEAAAIRAGDHPAVMRRSKLTMNASKRRAEMTERSAKRQRKIAATLYQQEVDRIHAAYETAIEQTRERLLTEANEEIRRSKNVMEGFKEDVNRMNTRHTRGNAKGNIVDDPWLTSSTASKTNGNGKRPLCAISLVLEDDALSEDIDFLRYSDRD----GGXXXXXXXXXXXXXXXXXXXXSGYTSY-----SENGRARRPPGWRRDE 310
BLAST of mRNA_L-elsbetiae_contig2057.6200.1 vs. uniprot
Match: A0A6H5KFI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI1_9PHAE) HSP 1 Score: 147 bits (370), Expect = 5.740e-34 Identity = 134/252 (53.17%), Postives = 142/252 (56.35%), Query Frame = 1 Query: 136 SPPLMMLDDPPLGEGWDENGNDLSKAANDAVRQAYCGTWMAKLRQEAAAIRAGDHPSVMRRSKLTMKASKQRMDMTERNAKRQRDIAAKLYQNEVERINEAHDTAIEQTRERLLAEANEEIRRSKNQMEGCKEDMNRMNTRHTRGNAKEGSVQDFWSASITGSKTNGS-KRPLYAISIVLDDDVLSEDIDLLRYSDRESSNRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGG-AENGRTRRAPGWRRDE 885 S P +L+DPPLGEGWDE+GNDLSKAAND TRERLL EANEEIRRSKN MEG KED+NRMNTRHTRGNAK V D W S T SK NG+ KRPL AIS+VL+DD LSEDID LRYSDRE RGGXXXXXXXXXXXXXXXXXXXXXXXXXX +ENGR RR PGWRRDE Sbjct: 363 SSPSSVLEDPPLGEGWDEHGNDLSKAAND-------------------------------------------------------------------------------TRERLLTEANEEIRRSKNLMEGFKEDVNRMNTRHTRGNAKGNIVDDPWLTSSTSSKANGNGKRPLCAISLVLEDDALSEDIDFLRYSDRE---RGGXXXXXXXXXXXXXXXXXXXXXXXXXXSGYTSYSENGRARRPPGWRRDE 532 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2057.6200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2057.6200.1 >prot_L-elsbetiae_contig2057.6200.1 ID=prot_L-elsbetiae_contig2057.6200.1|Name=mRNA_L-elsbetiae_contig2057.6200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp MDMDMDDGEAATTVGEAGSPQEESRSEAAARARAAQHLSSPPLMMLDDPPback to top mRNA from alignment at L-elsbetiae_contig2057:2402..7571- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2057.6200.1 ID=mRNA_L-elsbetiae_contig2057.6200.1|Name=mRNA_L-elsbetiae_contig2057.6200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5170bp|location=Sequence derived from alignment at L-elsbetiae_contig2057:2402..7571- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2057:2402..7571- >mRNA_L-elsbetiae_contig2057.6200.1 ID=mRNA_L-elsbetiae_contig2057.6200.1|Name=mRNA_L-elsbetiae_contig2057.6200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig2057:2402..7571- (Laminarionema elsbetiae ELsaHSoW15)back to top |