mRNA_L-elsbetiae_contig20569.6198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20569.6198.1
Unique NamemRNA_L-elsbetiae_contig20569.6198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.750e-39
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 2 
Query:    2 ASARAVGELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            AS RAV ELLCCCVLGV AAKKGILTPVNVAALSKIVYGIFLP+LLMVNVAKT VSQ VASLLPIP FA IQ+A+GL +S  AMRLL I+P TE GRE KV
Sbjct:  142 ASTRAVSELLCCCVLGVVAAKKGILTPVNVAALSKIVYGIFLPSLLMVNVAKTCVSQSVASLLPIPAFAGIQVALGLAISEVAMRLLRINPDTEAGREAKV 242
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.770e-29
Identity = 63/100 (63.00%), Postives = 81/100 (81.00%), Query Frame = 2 
Query:    5 SARAVGELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            S RAV ELL CCV GV AAKKG+LTP NV+ALS+IVY IFLP+LL+VNVA+T +SQP+++LLPIP+FA  QI +G  ++   M++L I+PTTE GRE +V
Sbjct:   14 SVRAVAELLTCCVFGVTAAKKGVLTPTNVSALSQIVYNIFLPSLLLVNVAETAISQPLSTLLPIPLFAWAQIFIGYKIARLTMKVLRIEPTTEEGREVQV 113
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: W7TA92_9STRA (Auxin efflux carrier-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA92_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.390e-11
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 2 
Query:    2 ASARAVGELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            AS  AVGELL  C +G    ++GIL    +A LS IVY I LP+LL+VNVAKT+ + P+ +LLP+P+F  +QI +   ++     L+  D  +  GR+ +V
Sbjct:  114 ASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRV 214
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A4D9CQA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQA1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.710e-11
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 2 
Query:    2 ASARAVGELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            AS  AVGELL  C +G    ++GIL    +A LS IVY I LP+LL+VNVAKT+ + P+ +LLP+P+F  +QI +   ++     L+  D  +  GR+ +V
Sbjct:   51 ASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRV 151
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A7S3XRL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL6_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:   44 LGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            LG  A+  G+L     +ALSK  Y +FLPALL+VNVA T+ SQ + +LLP+P+ A +QI + +  +    +LL I+  +  GR   V
Sbjct:    4 LGYQASVNGVLDQPTRSALSKCTYSLFLPALLLVNVANTVASQSILTLLPLPLMAMLQIILVMGCANLLAKLLGIERASYEGRVFNV 90
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A1X6P6B7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6B7_PORUM)

HSP 1 Score: 57.0 bits (136), Expect = 3.520e-7
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:   14 AVGELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVSQPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNI 268
            AV +LL    +GVAA+++GILTP  +AALS++V  +FLPA+L  N+   + + P+ ++  +P  AA Q+AVG  V+ A    L +
Sbjct:  101 AVTQLLLTVGMGVAASRQGILTPAVLAALSRVVVSVFLPAVLFTNIVTAMATAPLRTVAVLPAAAAAQMAVGAAVAAAVRPALRL 185
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BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.410e-5
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:   23 ELLCCCVLGVAAAKKGILTPVNVAALSKIVYGIFLPALLMVNVAKTIVS--QPVASLLPIPVFAAIQIAVGLVVSGAAMRLLNIDPTTEMGRETKV 304
            +L+  C +G   +KKGIL    + +LSK+++ +F P LL VNVA T+ +  Q ++ LL +PVFA +QI  G  V  A  ++L +   +   RE + 
Sbjct:    2 KLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQILFGSAVGKAMEKILGLKEGSPEARELRT 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20569.6198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KMD6_9PHAE9.750e-3981.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLT3_9STRA5.770e-2963.00Auxin efflux carrier n=1 Tax=Tribonema minus TaxID... [more]
W7TA92_9STRA7.390e-1142.57Auxin efflux carrier-like protein n=2 Tax=Nannochl... [more]
A0A4D9CQA1_9STRA7.710e-1142.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3XRL6_HETAK1.370e-741.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1X6P6B7_PORUM3.520e-741.18Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6H5JBW8_9PHAE1.410e-536.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20569contigL-elsbetiae_contig20569:1086..2301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815847.7641697-CDS-L-elsbetiae_contig20569:1085..11911622815847.7641697-CDS-L-elsbetiae_contig20569:1085..1191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20569 1086..1191 +
1691683143.450773-CDS-L-elsbetiae_contig20569:1085..11911691683143.450773-CDS-L-elsbetiae_contig20569:1085..1191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20569 1086..1191 +
1622815847.773412-CDS-L-elsbetiae_contig20569:2082..23001622815847.773412-CDS-L-elsbetiae_contig20569:2082..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20569 2083..2300 +
1691683143.4610188-CDS-L-elsbetiae_contig20569:2082..23001691683143.4610188-CDS-L-elsbetiae_contig20569:2082..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20569 2083..2300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20569.6198.1prot_L-elsbetiae_contig20569.6198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20569 1086..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20569.6198.1

>prot_L-elsbetiae_contig20569.6198.1 ID=prot_L-elsbetiae_contig20569.6198.1|Name=mRNA_L-elsbetiae_contig20569.6198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GVGEGGGRAAVLLRLGRGGGEEGDLDPRQRGRPLQDRVRYLPPGPAHGQR
GEDDSQPARGVAPAHPGLRGDSDSGGARRVGGGHASLEHRPHNGDGPRDK
GRGRVGGG
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mRNA from alignment at L-elsbetiae_contig20569:1086..2301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20569.6198.1 ID=mRNA_L-elsbetiae_contig20569.6198.1|Name=mRNA_L-elsbetiae_contig20569.6198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1216bp|location=Sequence derived from alignment at L-elsbetiae_contig20569:1086..2301+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCGGCGAGGGCGGTGGGCGAGCTGCTGTGCTGCTGCGTCTTGGGCG
TGGCGGCGGCGAAGAAGGGGATCTTGACCCCCGTCAACGTGGCCGCCCTC
TCCAAGGTGAGCGCGCGCGTGGTGTCCAGGGTCCCGGGGCGTGTTTATTG
GTGGGTATAGCGTTGCCAAGGTTTTTCCTGAAGAAGCGCCCCCAAGGTCC
CTGAAAAGGAGCAGGCGTGCTGTGTAACGTTTTTTTTTCTTTTTTTTTTT
TTTTAAAAGGTAGCACGCGTGCTGTGTAATGTTAATGTTTTCTTCTTCGT
TGCGTCTAAATAAACATGAAGCATGCAGCCGTACGCATGGTAGACGCTAT
GCCTTGCGCGGTTGTACCCTCTGGTGGTTCTTTTTGTTTTCAGGCCCCCC
TACTATGATGTGGTATGTATGTACCATATACGACGCAAGATAACACACCC
CCTGCACCGATTTTCAAAGCTCGGTTACTCCGCAACGAGGATGATAATAA
CACCAAACGACATGTTTTCGGGCAGCTCTTGATGAGATCTTTCCAATGCC
ACCCTGTTCGGGACTGGCACTCTTCTCGCTGTGGATTGCTTGAGCTTTAA
AACTCGGTCTAGGGGGGGTGTTATCTCGTGTCGTACACGGTATGTATGTG
AGGTAGGCATGTATGAGCACGTTGCGGCCGGAGCCGGGAAACGTCGTGCC
ATGGGCTTGGCAGCTGTTGCTGCGGTCGAAACTTTCCGTTGAACGAAGCT
GTTGGTTGTCCCAAGACGTGTTTTCAGCCTACTCCGCACGAATCAGTTTG
CATGTCCGCCGATCCTGAGAGACATGCATATGTAGCACCACGCTTGCTCC
GCCGCGCTACGTAAGACACCCGACAGCACGATGCAGCGAGCATCATCCCA
ACACACACCGGCGACGGATTTTTCCTCCCTCCCTCCCTCTCTCTCTCTCT
CTCTCTCTCTCTCGCTCCGCTCATTTCTTCTCCCTGCGGTTTTTCAGATC
GTGTACGGTATCTTCCTCCCGGCCCTGCTCATGGTCAACGTGGCGAAGAC
GATAGTCAGCCAGCCCGTGGCGTCGCTCCTGCCCATCCCGGTCTTCGCGG
CGATTCAGATAGCGGTGGGGCTCGTCGTGTCGGGGGCGGCCATGCGTCTC
TTGAACATCGACCCCACAACGGAGATGGGCCGCGAGACAAAGGTAGGGGG
AGGGTGGGGGGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20569:1086..2301+

>mRNA_L-elsbetiae_contig20569.6198.1 ID=mRNA_L-elsbetiae_contig20569.6198.1|Name=mRNA_L-elsbetiae_contig20569.6198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig20569:1086..2301+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCGGCGAGGGCGGTGGGCGAGCTGCTGTGCTGCTGCGTCTTGGGCG
TGGCGGCGGCGAAGAAGGGGATCTTGACCCCCGTCAACGTGGCCGCCCTC
TCCAAGGGCGTCGGCGAGGGCGGTGGGCGAGCTGCTGTGCTGCTGCGTCT
TGGGCGTGGCGGCGGCGAAGAAGGGGATCTTGACCCCCGTCAACGTGGCC
GCCCTCTCCAAGATCGTGTACGGTATCTTCCTCCCGGCCCTGCTCATGGT
CAACGTGGCGAAGACGATAGTCAGCCAGCCCGTGGCGTCGCTCCTGCCCA
TCCCGGTCTTCGCGGCGATTCAGATAGCGGTGGGGCTCGTCGTGTCGGGG
GCGGCCATGCGTCTCTTGAACATCGACCCCACAACGGAGATGGGCCGCGA
GACAAAGGTAGGGGGAGGGTGGGGGGGGGGATCGTGTACGGTATCTTCCT
CCCGGCCCTGCTCATGGTCAACGTGGCGAAGACGATAGTCAGCCAGCCCG
TGGCGTCGCTCCTGCCCATCCCGGTCTTCGCGGCGATTCAGATAGCGGTG
GGGCTCGTCGTGTCGGGGGCGGCCATGCGTCTCTTGAACATCGACCCCAC
AACGGAGATGGGCCGCGAGACAAAGGTAGGGGGAGGGTGGGGGGGGGG
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