mRNA_L-elsbetiae_contig20522.6187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20522.6187.1
Unique NamemRNA_L-elsbetiae_contig20522.6187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20522.6187.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.930e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    7 GCTMRPTFGMVGSKAAEFCSKHAKGGMIDVNNKTCGH 117
            GCT RP++G+ GSK AEFCSKH+K GM +V  K CGH
Sbjct:   35 GCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCGH 71
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BLAST of mRNA_L-elsbetiae_contig20522.6187.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.190e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 HPGCTMRPTFGMVGSKAAEFCSKHAKGGMIDVNNKTC 111
            H  CT RPT+G+ GSK  EFCS+HA+ GM++VNNK C
Sbjct:    6 HANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_L-elsbetiae_contig20522.6187.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.280e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 HPGCTMRPTFGMVGSKAAEFCSKHAKGGMIDVNNKTC 111
            H  CT RPT+G+ GSK  EFCS+HA+ GM++VNNK C
Sbjct:   66 HENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
[Close]
BLAST of mRNA_L-elsbetiae_contig20522.6187.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.060e-5
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 GCTMRPTFGMVGSKAAEFCSKHAKGGMIDVNNKTCGH 117
            GC+MRP++G   SK AEFCS+HAK GM++V +K CGH
Sbjct:  252 GCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRCGH 288
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20522.6187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY22_ECTSI5.930e-664.86EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI6.190e-662.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE8.280e-662.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI9.060e-562.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20522contigL-elsbetiae_contig20522:1108..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1235
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20522.6187.1prot_L-elsbetiae_contig20522.6187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20522 1123..2118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.5691342-UTR-L-elsbetiae_contig20522:1107..11221622815846.5691342-UTR-L-elsbetiae_contig20522:1107..1122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20522 1108..1122 +
1691683142.561246-UTR-L-elsbetiae_contig20522:1107..11221691683142.561246-UTR-L-elsbetiae_contig20522:1107..1122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20522 1108..1122 +
1622815846.5912402-UTR-L-elsbetiae_contig20522:2118..23421622815846.5912402-UTR-L-elsbetiae_contig20522:2118..2342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20522 2119..2342 +
1691683142.5822597-UTR-L-elsbetiae_contig20522:2118..23421691683142.5822597-UTR-L-elsbetiae_contig20522:2118..2342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20522 2119..2342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.581014-CDS-L-elsbetiae_contig20522:1122..21181622815846.581014-CDS-L-elsbetiae_contig20522:1122..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20522 1123..2118 +
1691683142.5723722-CDS-L-elsbetiae_contig20522:1122..21181691683142.5723722-CDS-L-elsbetiae_contig20522:1122..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20522 1123..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20522.6187.1

>prot_L-elsbetiae_contig20522.6187.1 ID=prot_L-elsbetiae_contig20522.6187.1|Name=mRNA_L-elsbetiae_contig20522.6187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=332bp
MRPTFGMVGSKAAEFCSKHAKGGMIDVNNKTCGHQGCNTRPSFGMVGSKE
AEFCSKHAKGGMIDVQNKRCGHPGCTTIPSFGMISGKKAEFCSKHAKRGM
IDVKNKRCDHPGCTTIPSFGMVGSKKAEFCSKHAKRGMINVQNKRCRHPG
CTTRPSFGMVGSKAAEFCSKHAKGGMINVKDKTCGHPGCTTRPSFGMVGS
KEAECCSKHAKGGMVDVKNKKCGHPGCTTIPSFSMVGSKKAEFCSKHAKG
GMINVKDKRCGHPGCTIGSTFGMVGSKAAEFCSKHAEGGMVDVKHKRCGH
PGCTTIPSFGMVGSKKAEFCPKHAQGGMARI*
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mRNA from alignment at L-elsbetiae_contig20522:1108..2342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20522.6187.1 ID=mRNA_L-elsbetiae_contig20522.6187.1|Name=mRNA_L-elsbetiae_contig20522.6187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1235bp|location=Sequence derived from alignment at L-elsbetiae_contig20522:1108..2342+ (Laminarionema elsbetiae ELsaHSoW15)
CACCCAGGGTGCACCATGCGGCCGACTTTCGGCATGGTCGGCAGCAAGGC
GGCGGAATTCTGCTCCAAGCACGCAAAGGGGGGAATGATCGATGTGAACA
ACAAGACGTGTGGCCACCAAGGTTGCAACACGCGGCCGAGCTTCGGCATG
GTTGGCAGCAAGGAGGCGGAGTTCTGCTCCAAGCACGCAAAGGGGGGAAT
GATCGACGTCCAGAACAAGAGGTGCGGCCACCCAGGGTGCACCACGATCC
CGTCCTTTGGCATGATCAGCGGCAAGAAGGCGGAGTTCTGCTCCAAGCAC
GCAAAGAGGGGAATGATCGACGTCAAGAACAAGAGGTGCGACCACCCAGG
GTGCACCACGATCCCGTCTTTCGGCATGGTTGGCAGCAAGAAGGCGGAAT
TCTGCTCCAAGCACGCAAAGAGGGGAATGATCAACGTCCAGAACAAGAGG
TGCCGCCACCCAGGGTGCACCACGCGGCCGAGCTTCGGCATGGTCGGCAG
CAAGGCGGCGGAATTCTGCTCCAAGCATGCAAAGGGGGGAATGATCAACG
TCAAGGACAAGACGTGCGGCCACCCAGGGTGCACCACGCGGCCGAGCTTC
GGCATGGTCGGCAGCAAGGAGGCGGAGTGCTGCTCCAAGCACGCAAAGGG
GGGAATGGTCGACGTCAAGAACAAGAAGTGCGGCCACCCAGGTTGCACCA
CGATCCCGTCTTTCAGCATGGTTGGCAGCAAGAAGGCGGAATTCTGTTCC
AAGCACGCAAAGGGGGGAATGATCAACGTCAAGGACAAGAGGTGCGGCCA
CCCAGGGTGCACCATTGGGTCGACCTTCGGCATGGTCGGCAGCAAGGCGG
CGGAATTCTGCTCCAAGCACGCAGAGGGGGGAATGGTCGACGTCAAGCAC
AAGAGGTGCGGCCACCCTGGGTGCACCACGATCCCATCTTTCGGCATGGT
CGGCAGCAAGAAGGCGGAGTTCTGCCCCAAGCACGCACAGGGGGGAATGG
CACGCATCTGAGAGTAGACAGTCGAACGTAGAACACAAACTGCAGTCCAA
TGTAGAAAGTCGATAATCTAGTCTACTGATAGATATAGCGCCGTAGATAT
AAAAGGAAGGTTTTCGGTAGACTCGCCGACGAAAACCGCGTTTTATTTTG
AAACCGTCGGATTGACTTCAAAGTAACAGGAAGGCGTTATAGTTCTAGTT
TTTGGGTCTCGCTGACATGCAGAAAGGCTCACTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20522:1108..2342+

>mRNA_L-elsbetiae_contig20522.6187.1 ID=mRNA_L-elsbetiae_contig20522.6187.1|Name=mRNA_L-elsbetiae_contig20522.6187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig20522:1108..2342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCCGACTTTCGGCATGGTCGGCAGCAAGGCGGCGGAATTCTGCTC
CAAGCACGCAAAGGGGGGAATGATCGATGTGAACAACAAGACGTGTGGCC
ACCAAGGTTGCAACACGCGGCCGAGCTTCGGCATGGTTGGCAGCAAGGAG
GCGGAGTTCTGCTCCAAGCACGCAAAGGGGGGAATGATCGACGTCCAGAA
CAAGAGGTGCGGCCACCCAGGGTGCACCACGATCCCGTCCTTTGGCATGA
TCAGCGGCAAGAAGGCGGAGTTCTGCTCCAAGCACGCAAAGAGGGGAATG
ATCGACGTCAAGAACAAGAGGTGCGACCACCCAGGGTGCACCACGATCCC
GTCTTTCGGCATGGTTGGCAGCAAGAAGGCGGAATTCTGCTCCAAGCACG
CAAAGAGGGGAATGATCAACGTCCAGAACAAGAGGTGCCGCCACCCAGGG
TGCACCACGCGGCCGAGCTTCGGCATGGTCGGCAGCAAGGCGGCGGAATT
CTGCTCCAAGCATGCAAAGGGGGGAATGATCAACGTCAAGGACAAGACGT
GCGGCCACCCAGGGTGCACCACGCGGCCGAGCTTCGGCATGGTCGGCAGC
AAGGAGGCGGAGTGCTGCTCCAAGCACGCAAAGGGGGGAATGGTCGACGT
CAAGAACAAGAAGTGCGGCCACCCAGGTTGCACCACGATCCCGTCTTTCA
GCATGGTTGGCAGCAAGAAGGCGGAATTCTGTTCCAAGCACGCAAAGGGG
GGAATGATCAACGTCAAGGACAAGAGGTGCGGCCACCCAGGGTGCACCAT
TGGGTCGACCTTCGGCATGGTCGGCAGCAAGGCGGCGGAATTCTGCTCCA
AGCACGCAGAGGGGGGAATGGTCGACGTCAAGCACAAGAGGTGCGGCCAC
CCTGGGTGCACCACGATCCCATCTTTCGGCATGGTCGGCAGCAAGAAGGC
GGAGTTCTGCCCCAAGCACGCACAGGGGGGAATGGCACGCATCTGAATGC
GGCCGACTTTCGGCATGGTCGGCAGCAAGGCGGCGGAATTCTGCTCCAAG
CACGCAAAGGGGGGAATGATCGATGTGAACAACAAGACGTGTGGCCACCA
AGGTTGCAACACGCGGCCGAGCTTCGGCATGGTTGGCAGCAAGGAGGCGG
AGTTCTGCTCCAAGCACGCAAAGGGGGGAATGATCGACGTCCAGAACAAG
AGGTGCGGCCACCCAGGGTGCACCACGATCCCGTCCTTTGGCATGATCAG
CGGCAAGAAGGCGGAGTTCTGCTCCAAGCACGCAAAGAGGGGAATGATCG
ACGTCAAGAACAAGAGGTGCGACCACCCAGGGTGCACCACGATCCCGTCT
TTCGGCATGGTTGGCAGCAAGAAGGCGGAATTCTGCTCCAAGCACGCAAA
GAGGGGAATGATCAACGTCCAGAACAAGAGGTGCCGCCACCCAGGGTGCA
CCACGCGGCCGAGCTTCGGCATGGTCGGCAGCAAGGCGGCGGAATTCTGC
TCCAAGCATGCAAAGGGGGGAATGATCAACGTCAAGGACAAGACGTGCGG
CCACCCAGGGTGCACCACGCGGCCGAGCTTCGGCATGGTCGGCAGCAAGG
AGGCGGAGTGCTGCTCCAAGCACGCAAAGGGGGGAATGGTCGACGTCAAG
AACAAGAAGTGCGGCCACCCAGGTTGCACCACGATCCCGTCTTTCAGCAT
GGTTGGCAGCAAGAAGGCGGAATTCTGTTCCAAGCACGCAAAGGGGGGAA
TGATCAACGTCAAGGACAAGAGGTGCGGCCACCCAGGGTGCACCATTGGG
TCGACCTTCGGCATGGTCGGCAGCAAGGCGGCGGAATTCTGCTCCAAGCA
CGCAGAGGGGGGAATGGTCGACGTCAAGCACAAGAGGTGCGGCCACCCTG
GGTGCACCACGATCCCATCTTTCGGCATGGTCGGCAGCAAGAAGGCGGAG
TTCTGCCCCAAGCACGCACAGGGGGGAATGGCACGCATCTGA
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