mRNA_L-elsbetiae_contig2052.6185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2052.6185.1
Unique NamemRNA_L-elsbetiae_contig2052.6185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: D7FJ47_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ47_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 6.290e-56
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 1
Query:    4 AMLMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            AMLMRAMEREE E GTS+MEQGEEGHHM VVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSA+VR+L+ CVLWSIHREVFKAVQALTAS +LIARSTHLYHVPWL
Sbjct:  210 AMLMRAMEREEHEEGTSVMEQGEEGHHMSVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSATVRTLTRCVLWSIHREVFKAVQALTASMSLIARSTHLYHVPWL 319          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A7S2UWP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.750e-29
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 MAMLMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            M +++ ++  E   AG  LM QGEEG+ M++++ GSLEV ID++ +RVIG GD  GELALL+NAPRSASV++ +PCVLWS+ RE F+ VQAL +S  L+ R   L   P L
Sbjct:    2 MDLVLDSLRCEHLAAGEYLMRQGEEGNKMYIIQSGSLEVDIDNKLVRVIGAGDAVGELALLFNAPRSASVKAQAPCVLWSLKRETFREVQALASSAQLVQRVAWLLQAPSL 112          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A482RXL7_9ARCH (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXL7_9ARCH)

HSP 1 Score: 102 bits (253), Expect = 1.400e-23
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 MAMLMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            M +L++ M+REE + G +L+ +GE G  ++VVE G+L+V I+   IR +  G   GELALLY+APRSA+V+  + CVLWS+ RE+FK VQA++A+ N I R+  L   P L
Sbjct:   94 MELLIKGMKREEFDEGYTLITEGESGSKLYVVESGTLDVTINGSPIREMNRGSMLGELALLYDAPRSATVQCRTKCVLWSLSREIFKRVQAISATANQIQRARWLIASPEL 204          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A7S0SWA7_9STRA (cGMP-dependent protein kinase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWA7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.390e-23
Identity = 50/107 (46.73%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    7 MLMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVP 327
            ML+R M+REE + G  L+ +GE G  ++VV+EG L+V I+ E IR +G G   GELALLY+APRSA+V+ ++ CVLW++ R++FK +QA++++ + + RS  L + P
Sbjct:   97 MLIRGMQREEVKEGYLLIIEGESGSKLYVVQEGELQVSINGEVIRQMGKGTMLGELALLYDAPRSATVKCITDCVLWTLRRDIFKRIQAISSTTHELERSRGLINSP 203          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A7S3USL8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USL8_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 7.520e-23
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   70 EEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            EEG  M+V++ G++E+ ID   IR++  GD  GELALLYNAPRSASVR+  PCV+WS+ RE F+ VQAL +S  L+ R   L  VP L
Sbjct:    1 EEGSKMYVIQSGTMEITIDGNLIRMLSAGDAVGELALLYNAPRSASVRAAEPCVVWSLARETFREVQALASSVQLLQRVAWLLDVPTL 88          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A835YKT1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.630e-22
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   10 LMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSL-SPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            L+ + E   C AG  LM++GEEG +M++V EGSL+V++  E +R IG GD  GELAL+Y+APRSASVR+  +  VLWS+ R+ F+ VQA+T+S  L+AR   L   P L
Sbjct:  186 LLDSFEMVACAAGEWLMKEGEEGDNMYIVAEGSLQVLVGGEKVRDIGRGDAVGELALIYSAPRSASVRAAPAAAVLWSLCRDKFREVQAVTSSEALVARVEMLSAAPAL 294          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: K3WEA6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEA6_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 4.290e-19
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   40 EAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            +AG +++ QG  G+  +V+E GS ++I+D+E +     GD FGELALLYN PR+A++R+++ C+LW++ R  F+ + A TAS   +AR   L +V  L
Sbjct:  117 QAGENVISQGTPGNCFYVLESGSCDIIVDNELVGKYNNGDAFGELALLYNCPRAATIRAITGCILWTVERTTFRKIMATTASATQLARVNFLKNVELL 214          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A5D6XVB7_9STRA (cGMP-dependent protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVB7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.450e-18
Identity = 40/98 (40.82%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   40 EAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            + G +++ QG  G+  +V+E GS ++++D+E +     GD FGELALLYN PR+A++R+ S C+LW++ R +F+ + A TAS   +AR   L +V  L
Sbjct:  112 QCGDNVISQGAAGNCFYVLESGSCDIVVDNELVGKYSNGDAFGELALLYNCPRAATIRATSGCILWTVERTMFRRIMATTASATQLARVNFLKNVELL 209          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A2D4C4L2_PYTIN (cGMP-dependent protein kinase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4C4L2_PYTIN)

HSP 1 Score: 88.2 bits (217), Expect = 4.580e-18
Identity = 40/98 (40.82%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   40 EAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHVPWL 333
            +AG +++ QG  G+  +V+E GS ++++D + +     GD FGELALLYN PR+A++R+ + C+LWS+ R +F+ + A TAS   +AR   L +V  L
Sbjct:  125 QAGENVIAQGTAGNCFYVLESGSCDIVVDGQLVGKYANGDAFGELALLYNCPRAATIRATTGCILWSVERTMFRKIMATTASATQLARVNFLKNVELL 222          
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Match: A0A8K1FK60_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK60_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 1.170e-17
Identity = 38/91 (41.76%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   52 SLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIGVGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIARSTHLYHV 324
            ++++QG+ G   +VV+ G LEVI++   +  +G GD FGELAL+Y+APR+A+VR+LS  V+W++ R+ F+ +QA +++ +L+ R+  L  V
Sbjct:  156 AIIKQGDSGDKFYVVQSGKLEVIVNSTIVGCLGAGDHFGELALIYDAPRAATVRALSDAVIWTLDRDEFRMIQARSSNDSLVKRAKWLRQV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2052.6185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ47_ECTSI6.290e-5690.91cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A7S2UWP0_9STRA3.750e-2952.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482RXL7_9ARCH1.400e-2347.75Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S0SWA7_9STRA3.390e-2346.73cGMP-dependent protein kinase n=1 Tax=Chromulina n... [more]
A0A7S3USL8_HETAK7.520e-2354.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YKT1_9STRA5.630e-2250.46cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
K3WEA6_GLOUD4.290e-1941.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XVB7_9STRA2.450e-1840.82cGMP-dependent protein kinase n=1 Tax=Pythium bras... [more]
A0A2D4C4L2_PYTIN4.580e-1840.82cGMP-dependent protein kinase n=2 Tax=Pythium TaxI... [more]
A0A8K1FK60_PYTOL1.170e-1741.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2052contigL-elsbetiae_contig2052:10912..12545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue6.9e-48
Seed eggNOG ortholog2880.D7FJ47
KEGG koko:K04739,ko:K07359,ko:K07376
KEGG Pathwayko04022,ko04140,ko04152,ko04211,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04910,ko04920,ko04921,ko04923,ko04970,ko05034,map04022,map04140,map04152,map04211,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04910,map04920,map04921,map04923,map04970,map05034
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0614@2759,KOG1113@2759
EC2.7.11.12,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons3
Model size335
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2052.6185.1prot_L-elsbetiae_contig2052.6185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2052 10912..12545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.3644035-CDS-L-elsbetiae_contig2052:10911..109771622815846.3644035-CDS-L-elsbetiae_contig2052:10911..10977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10912..10977 +
1691683142.4272115-CDS-L-elsbetiae_contig2052:10911..109771691683142.4272115-CDS-L-elsbetiae_contig2052:10911..10977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10912..10977 +
1622815846.3758929-CDS-L-elsbetiae_contig2052:11676..117421622815846.3758929-CDS-L-elsbetiae_contig2052:11676..11742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 11677..11742 +
1691683142.4400222-CDS-L-elsbetiae_contig2052:11676..117421691683142.4400222-CDS-L-elsbetiae_contig2052:11676..11742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 11677..11742 +
1622815846.3911302-CDS-L-elsbetiae_contig2052:12344..125451622815846.3911302-CDS-L-elsbetiae_contig2052:12344..12545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 12345..12545 +
1691683142.4514632-CDS-L-elsbetiae_contig2052:12344..125451691683142.4514632-CDS-L-elsbetiae_contig2052:12344..12545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 12345..12545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2052.6185.1

>prot_L-elsbetiae_contig2052.6185.1 ID=prot_L-elsbetiae_contig2052.6185.1|Name=mRNA_L-elsbetiae_contig2052.6185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MAMLMRAMEREECEAGTSLMEQGEEGHHMFVVEEGSLEVIIDDEAIRVIG
VGDRFGELALLYNAPRSASVRSLSPCVLWSIHREVFKAVQALTASGNLIA
RSTHLYHVPWL
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mRNA from alignment at L-elsbetiae_contig2052:10912..12545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2052.6185.1 ID=mRNA_L-elsbetiae_contig2052.6185.1|Name=mRNA_L-elsbetiae_contig2052.6185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1634bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:10912..12545+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATGCTCATGAGGGCCATGGAGCGCGAGGAGTGCGAGGCCGGCAC GTCGCTTATGGAGCAGGTATGCTGTCATAAGTATGTACGCAAGGAGCGTG CCAGAGGACTACCGCGCTGTAGACCCTCTCCCTCCCGTGATTCCCGCAAC AGAACGAGTGCCGGTGCCCATACGGTTGAGTGTTTGAAGGTCGTGACAGA CTCGCCAGCTACCTACAGCGATTTAGCGGCCTACAGGTTCGTTTGTCGAG CAATGGAGGTCCAAAACGCAGGCCACAAAAATAGTAAGTATTCCTCAAAG TCACACAGTACTTCGAAGTATACACATACTATAAAGTAGTCTATTTGCGG CGACTGAAAACCTTCACGTACCTGTACTATTTTGGTGGTTGAGTTGGTTT TTTCGTGGGGCTAGATCCCGGTGTTTCTGGTAGTCCAGTGCACATCGCAG ATAGATAGAGACTCCTACTCCTACTTCTTTTCGTTCATGTCGCTTGTCCA CCTCATCTCCTCGTCTTGTTTTTTTTCTTGAGACAACACCAGCAAAGTAT CAGCTTTCAACTACTGCAGTACCAACTTGGTGAAAGACCAGGGAGCACCC ACCGCCTTTAGCATGCAAGACTCGCGTCTTCATCGACGTGGTCGGAATAT CGACAATCCTTTGTTTTAGCGTTCATCCTCGTTGTGTTCCCGCTGCTGTT ATTATTCTCTCTCGTGTTGCCATGTTGGTGAATGTCTTTCGTCTTGTACT TGTTCTTGTATCCAGGGAGAAGAGGGGCATCACATGTTCGTCGTAGAGGA GGGGAGTCTAGAGGTCATCATCGACGACGAGGTACGTGTGATATGCACGT ACCTACGTCAACGCTCGGCAACGTATCAAAAAAATAGACTATCAGCACCT ACTGCACGAACAACCCTCTCCCTCCCGCACCGGATAGTGCAGGTACAGTT GGTAAATGAAGTCTTGAAAATAAATCCAGAATTCTGAGTTCAAATTTAGC GATCATGACCAGGGCTCAGCTATCTACCGTAAGCATGCGAGTCATCGCAC CCCCCCGTGCCGGTTTTCAAAGCCCGATTTCTCCTTAACGAAGAGAGTGT CAGCACCAAACGGCAAGGTTTGTTTAGACAGCTCTCGGCGTGATCGTCCT AATGCCACCCTTTTCGGTGCCGGCACACCCTCTGTTAGGGCGTAATCGAG CTTTGAAAATCGGTACCGGGGGGTGCGATGACTCGCATGATTACGGTAAA AGTCGAGAACTCTGCTCTACTTTGCGCTACTCTTACTCCAACGTTTGCTC GTGTCCTCCCCTTGCTTCGCTGGACAGTACATTTACCCATCCGCGAAAGC CATCGCTCATTTTCCAATATACCAGCAGCAGTGACGAAACCTCTATTGCC TCTGTCTCGCGCAATCGTTATCACGGGCACCAGGCGATCCGTGTTATTGG AGTAGGCGACAGGTTCGGCGAGCTTGCGCTTTTGTACAACGCCCCCCGCA GCGCGAGCGTGCGGTCGTTGAGCCCCTGCGTCCTCTGGAGCATCCACCGA GAAGTCTTCAAGGCGGTGCAGGCTCTAACAGCGTCGGGAAACCTCATTGC CAGAAGCACACACCTCTACCACGTGCCGTGGTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2052:10912..12545+

>mRNA_L-elsbetiae_contig2052.6185.1 ID=mRNA_L-elsbetiae_contig2052.6185.1|Name=mRNA_L-elsbetiae_contig2052.6185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:10912..12545+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATGCTCATGAGGGCCATGGAGCGCGAGGAGTGCGAGGCCGGCAC
GTCGCTTATGGAGCAGATGGCGATGCTCATGAGGGCCATGGAGCGCGAGG
AGTGCGAGGCCGGCACGTCGCTTATGGAGCAGGGAGAAGAGGGGCATCAC
ATGTTCGTCGTAGAGGAGGGGAGTCTAGAGGTCATCATCGACGACGAGGG
AGAAGAGGGGCATCACATGTTCGTCGTAGAGGAGGGGAGTCTAGAGGTCA
TCATCGACGACGAGGCGATCCGTGTTATTGGAGTAGGCGACAGGTTCGGC
GAGCTTGCGCTTTTGTACAACGCCCCCCGCAGCGCGAGCGTGCGGTCGTT
GAGCCCCTGCGTCCTCTGGAGCATCCACCGAGAAGTCTTCAAGGCGGTGC
AGGCTCTAACAGCGTCGGGAAACCTCATTGCCAGAAGCACACACCTCTAC
CACGTGCCGTGGTTAGCGATCCGTGTTATTGGAGTAGGCGACAGGTTCGG
CGAGCTTGCGCTTTTGTACAACGCCCCCCGCAGCGCGAGCGTGCGGTCGT
TGAGCCCCTGCGTCCTCTGGAGCATCCACCGAGAAGTCTTCAAGGCGGTG
CAGGCTCTAACAGCGTCGGGAAACCTCATTGCCAGAAGCACACACCTCTA
CCACGTGCCGTGGTTA
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