mRNA_L-elsbetiae_contig2052.6184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2052.6184.1
Unique NamemRNA_L-elsbetiae_contig2052.6184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2052.6184.1 vs. uniprot
Match: D7FJ47_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ47_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.060e-28
Identity = 95/218 (43.58%), Postives = 121/218 (55.50%), Query Frame = 1 
Query:    1 MRRAFRGLVGARPTNTDEKRESAGGSHAPDDNGNHREGNDGRVGADRKRSS---SEELFPGFVEG--------GSAEQKREPRVSGGGQGTADPPACTISFGDTL-----PSGSAYPGDAGRLSDSQGLAFDRNISNSNNGGTVNKPLRRAQIFDKGVDASMMQDLMNDDAESDDGKHGADRDRGLGRTGLLQNSAFMGEQSADIVIGALQKFFFLEY 606
            M + FRG+ G R    D  R++ G       +G+  +     V A R+ SS   SEELFPGFVE         GS  + +E  ++  G+  AD    T SFG++       SG + P    R+++S                + NKP RRAQIFDKGVDAS+MQDLMNDDAESD    G  R  GLG+T  LQN+  MGEQSADIV+GAL+KFFFLE+
Sbjct:    1 MPKGFRGIAGERDETVD--RDATG-------SGDRNQSRISHVDAPRRPSSDEESEELFPGFVEEEGNLRRSTGSGSKDKE--MAAEGREAADSAGYTTSFGNSFRDPDRASGMSAPYSTHRVAESL---------------SCNKPSRRAQIFDKGVDASIMQDLMNDDAESDVNVDGTPRG-GLGKTMSLQNNTSMGEQSADIVVGALRKFFFLEH 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2052.6184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ47_ECTSI9.060e-2843.58cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2052contigL-elsbetiae_contig2052:7738..10860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D7FJ47
KEGG koko:K04739,ko:K07359,ko:K07376
KEGG Pathwayko04022,ko04140,ko04152,ko04211,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04910,ko04920,ko04921,ko04923,ko04970,ko05034,map04022,map04140,map04152,map04211,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04910,map04920,map04921,map04923,map04970,map05034
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0614@2759,KOG1113@2759
EC2.7.11.12,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons5
Model size625
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2052.6184.1prot_L-elsbetiae_contig2052.6184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2052 7738..10860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.2889047-CDS-L-elsbetiae_contig2052:7737..77721622815846.2889047-CDS-L-elsbetiae_contig2052:7737..7772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 7738..7772 +
1691683142.3702984-CDS-L-elsbetiae_contig2052:7737..77721691683142.3702984-CDS-L-elsbetiae_contig2052:7737..7772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 7738..7772 +
1622815846.304737-CDS-L-elsbetiae_contig2052:8322..85541622815846.304737-CDS-L-elsbetiae_contig2052:8322..8554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 8323..8554 +
1691683142.382573-CDS-L-elsbetiae_contig2052:8322..85541691683142.382573-CDS-L-elsbetiae_contig2052:8322..8554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 8323..8554 +
1622815846.3157082-CDS-L-elsbetiae_contig2052:9458..96351622815846.3157082-CDS-L-elsbetiae_contig2052:9458..9635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 9459..9635 +
1691683142.3924072-CDS-L-elsbetiae_contig2052:9458..96351691683142.3924072-CDS-L-elsbetiae_contig2052:9458..9635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 9459..9635 +
1622815846.325122-CDS-L-elsbetiae_contig2052:10360..105041622815846.325122-CDS-L-elsbetiae_contig2052:10360..10504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10361..10504 +
1691683142.4043086-CDS-L-elsbetiae_contig2052:10360..105041691683142.4043086-CDS-L-elsbetiae_contig2052:10360..10504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10361..10504 +
1622815846.3344438-CDS-L-elsbetiae_contig2052:10824..108601622815846.3344438-CDS-L-elsbetiae_contig2052:10824..10860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10825..10860 +
1691683142.416956-CDS-L-elsbetiae_contig2052:10824..108601691683142.416956-CDS-L-elsbetiae_contig2052:10824..10860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 10825..10860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2052.6184.1

>prot_L-elsbetiae_contig2052.6184.1 ID=prot_L-elsbetiae_contig2052.6184.1|Name=mRNA_L-elsbetiae_contig2052.6184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MRRAFRGLVGARPTNTDEKRESAGGSHAPDDNGNHREGNDGRVGADRKRS
SSEELFPGFVEGGSAEQKREPRVSGGGQGTADPPACTISFGDTLPSGSAY
PGDAGRLSDSQGLAFDRNISNSNNGGTVNKPLRRAQIFDKGVDASMMQDL
MNDDAESDDGKHGADRDRGLGRTGLLQNSAFMGEQSADIVIGALQKFFFL
EYDPEEVV
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mRNA from alignment at L-elsbetiae_contig2052:7738..10860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2052.6184.1 ID=mRNA_L-elsbetiae_contig2052.6184.1|Name=mRNA_L-elsbetiae_contig2052.6184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3123bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:7738..10860+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAGGGCGTTCCGTGGCCTTGTAGGGGCACGGTGAGTTCGACGCTG
CTCACTGAGTGTACCAAATGCTGTGGCCAAGACCAGGCAGCAAATAGCCT
GGGTGGATGGCATGGATGAAATCATGGGACCGACCGACCAGGGGAGAAAT
AGCCTATGTAGGGGTATTGCTGCCAACACCTGCGTCGGCAATCGGAAGGG
GCGCCCGCCGAGTAGAGGGTCTATGCCCAAAGGAAAGTTTTGTTCGGTAT
AGGTATTGCCTGTAAAGTGGTGTACGAGAAGGAGACATGGCGAATGCACG
CGCACACACATGCCGGCAGCGCCCCAAGGGGATATCACTGTTGCTGTCGT
GTTTTGTCCTGAGACGAGACGCGAGCCTTCAGCGTCCACGCAAGTATCTC
GAACCTTGAGGATTTTACGACCCAACATACTTCGAGCCCAACAGATATGT
TTTGTTTTTCCTGCCGCAACCACACTACCATACCCAGCAGATTTATCCAA
AACCTGTGAGAGAGAAGGACAGACTAACCCTAAGGTAAATATCCAACCTT
ATCCGTGATGTCTTCCTCTACAACACATGCAACAGACCGACAAACACCGA
CGAAAAACGCGAGAGCGCCGGCGGCAGCCACGCGCCAGACGACAACGGTA
ATCACCGGGAAGGAAACGACGGTCGCGTCGGTGCGGATAGAAAACGGAGT
TCCTCGGAAGAACTTTTTCCTGGGTTCGTGGAGGGGGGCTCCGCGGAGCA
GAAACGAGAGCCTAGGGTATCCGGAGGAGGGCAGGGAACGGCGGACCCTC
CCGCGTGCACGATATCGGTGAGGGATGGTGGATCCAGCAAGCAAAAGCGA
AGTACCCCGGCGGCATGCAGAGAGCGCTTCACCCTACAATACGAGCGTTT
TCTCCAAGTCGCACCAACAGCCCACGCGCATTTCCGCGCGGTAGCTCCAG
CCGTTTGCCGGAACAAGTGCGCTCTAGCATTTTCTGTGTCCTGAAGGTTT
CCGTCCCCAAAGTGAAACAATGATTGACTGTAACTCGGGAGCGTTAATAT
CGAGGCGAGGGATAAGCAGCCAGCTGCGATTTGTCGATGTACGGAAGCCC
TTTCTCATACCGATATGGTGTACCAACCAAGATGTACCAACACCCCGTGT
GTTTTCTTCTTCTGCATCTCTAACCCTCACAGCTTATATCCTACGTTCTG
GCAAGCTTTCAACCCTCTTCTTTCCCCCGAACCCACCGTTCGCCCGACAA
AAAGGGCATTCAAAGGGCCCCCCGCAAGTTAAGGTTTTGTCGTGTCCACG
CCCTAGACTGTATAGAGCACATTTATCTTTCTCTCCCAATTTTGCGATGT
GTAGACGCATGCATGTGTGCGGGACGCTAACATAGCAGGACATTACAGCG
CAGGCATGCGACGTACCAAGGCTCTCAAACATCAACAGCACAATGCTATC
GATGATTTGTCCGTCGACTAAACATCGGCGGGCGAACGTGCTGCTGTCTT
CATGCGGTAGCAGCAGTCAGCTGTTTTTGGCTCCATCCTCTACTCGCGTC
TGACATCCTCCAACGCCTTGCAACGTGTTTGGGGCTCTTTCTTCCCCTTC
CCTGGCGGGCACGGTGTTCTGATGTTGCTTCGCTCGGCGGGCATGCCACA
CCCGCGTGCCAAACACACGGCGCGGATGCGACGGTTTGATTCACGCACAA
ATCGCGGCACGCTGACCAAAGTTTGGGGACACTCTGCCATCCGGAAGCGC
TTACCCAGGCGACGCCGGCAGGCTTTCCGACTCGCAGGGCTTAGCCTTTG
ACAGAAACATTAGCAATAGCAACAACGGCGGGACTGTCAACAAGCCTCTC
CGAAGGGCGCAGATCTTCGACAAAGGAGTGGATGCTTCGATGATGCAGGT
GAGTGCTACACTCATAAGTGTTGCTGTATGCCAGATGCTGCGGCCCCATA
GCTGTTCTGCAATAAACAACTCACACGCTTGCGCCGGGGTCAAGTGCTGG
CAGGCGTGCTTCGTGGAGCAGGTCGAGACTGCTGCTGGGCGGTTGAAACA
TGTTTTGGTTAAAATACTATCGGCCATGGCGTACCGGTCCATTTCGTTCC
TGGGCGTCGTTCATAATCTCTAAAAAAAGCTGTTGTGTCAAATAGTTTGG
TCTGGGATGCTGCATCGGAGGCCAAGCGTATCGTGATTTCACCACGAACG
CGGCCACGCTGGAAACTGGAAGTGACCGGGTCTGAATGATTCGTCGACCA
CGATTATTATTCTGCCGCACACACCCAATCCCTTTCTGCCCGGCCCGATG
ACAGTTGCCACGTGCCAGAGCATTTTATCCGGGAAGTATGTATGCTTTCT
AAAGGGGGAAAGTTCCTTCCTACGCTTGAGGTGTTCGATCAATCGTCGGT
TTCCTTGGAAACTGTCTCCACCATCACGCCATCAGCGCAGTATCCTCTGC
CCAGTAAACTGGCTGGCGACTTCAGCACACGAGAACAGGCGGGACAGACG
AGAGACTCTTCTGCTTAATCGATGCAAGAAAAATGTTTTGATGTGTGCAT
GTTTGCTTAATTGTAGCGTCATGTGGTGCGGATGAACTGCGGTGTGATGT
GATGCGATGTGATGTGATGTCAGGACTTGATGAACGACGACGCGGAAAGC
GACGACGGCAAGCACGGAGCGGATAGAGATAGGGGCCTCGGGAGGACAGG
ACTGCTGCAGAACTCAGCTTTCATGGGCGAGCAGTCGGCGGACATAGTTA
TCGGCGCTTTACAGAAGGTTTGATCTTGGCAGGCTTTGTGTGTCCATATA
CCGCCCCAAACTTGGAAGGCGCCATGCGTCGATTAGGCGAAGCCTTAGCG
AGAACTCGGAGACGATCTATCTCAGCTGTTGTAGTTCTTGGCCATCGGCT
TCCGTACACATCACACGGAACACATGAGCACTGCATAGCTTGCAGACAAT
CCCCAATCCTAACCAAAGCCGCCCCCGACCTTCACCTCTCGTAAGTTGAG
CCCATTTCCCCAACTACTGTACTCACCCATGCTTGAAATGCGAAATCTCT
ACTCTACCCTACCCGAACCCTTTGTACCACAAACTAGTTTTTCTTTCTGG
AGTACGATCCAGAGGAAGTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2052:7738..10860+

>mRNA_L-elsbetiae_contig2052.6184.1 ID=mRNA_L-elsbetiae_contig2052.6184.1|Name=mRNA_L-elsbetiae_contig2052.6184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:7738..10860+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAGGGCGTTCCGTGGCCTTGTAGGGGCACGATGCGGAGGGCGTTC
CGTGGCCTTGTAGGGGCACGACCGACAAACACCGACGAAAAACGCGAGAG
CGCCGGCGGCAGCCACGCGCCAGACGACAACGGTAATCACCGGGAAGGAA
ACGACGGTCGCGTCGGTGCGGATAGAAAACGGAGTTCCTCGGAAGAACTT
TTTCCTGGGTTCGTGGAGGGGGGCTCCGCGGAGCAGAAACGAGAGCCTAG
GGTATCCGGAGGAGGGCAGGGAACGGCGGACCCTCCCGCGTGCACGATAT
CGACCGACAAACACCGACGAAAAACGCGAGAGCGCCGGCGGCAGCCACGC
GCCAGACGACAACGGTAATCACCGGGAAGGAAACGACGGTCGCGTCGGTG
CGGATAGAAAACGGAGTTCCTCGGAAGAACTTTTTCCTGGGTTCGTGGAG
GGGGGCTCCGCGGAGCAGAAACGAGAGCCTAGGGTATCCGGAGGAGGGCA
GGGAACGGCGGACCCTCCCGCGTGCACGATATCGTTTGGGGACACTCTGC
CATCCGGAAGCGCTTACCCAGGCGACGCCGGCAGGCTTTCCGACTCGCAG
GGCTTAGCCTTTGACAGAAACATTAGCAATAGCAACAACGGCGGGACTGT
CAACAAGCCTCTCCGAAGGGCGCAGATCTTCGACAAAGGAGTGGATGCTT
CGATGATGCAGTTTGGGGACACTCTGCCATCCGGAAGCGCTTACCCAGGC
GACGCCGGCAGGCTTTCCGACTCGCAGGGCTTAGCCTTTGACAGAAACAT
TAGCAATAGCAACAACGGCGGGACTGTCAACAAGCCTCTCCGAAGGGCGC
AGATCTTCGACAAAGGAGTGGATGCTTCGATGATGCAGGACTTGATGAAC
GACGACGCGGAAAGCGACGACGGCAAGCACGGAGCGGATAGAGATAGGGG
CCTCGGGAGGACAGGACTGCTGCAGAACTCAGCTTTCATGGGCGAGCAGT
CGGCGGACATAGTTATCGGCGCTTTACAGAAGGACTTGATGAACGACGAC
GCGGAAAGCGACGACGGCAAGCACGGAGCGGATAGAGATAGGGGCCTCGG
GAGGACAGGACTGCTGCAGAACTCAGCTTTCATGGGCGAGCAGTCGGCGG
ACATAGTTATCGGCGCTTTACAGAAGTTTTTCTTTCTGGAGTACGATCCA
GAGGAAGTGGTGTTTTTCTTTCTGGAGTACGATCCAGAGGAAGTGGTG
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