mRNA_L-elsbetiae_contig2052.6183.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2052.6183.1
Unique NamemRNA_L-elsbetiae_contig2052.6183.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2052.6183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2052contigL-elsbetiae_contig2052:6896..7745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.2486076-CDS-L-elsbetiae_contig2052:6895..70051622815846.2486076-CDS-L-elsbetiae_contig2052:6895..7005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 6896..7005 +
1691683142.3474238-CDS-L-elsbetiae_contig2052:6895..70051691683142.3474238-CDS-L-elsbetiae_contig2052:6895..7005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 6896..7005 +
1622815846.2598724-CDS-L-elsbetiae_contig2052:7580..77431622815846.2598724-CDS-L-elsbetiae_contig2052:7580..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 7581..7743 +
1691683142.359212-CDS-L-elsbetiae_contig2052:7580..77431691683142.359212-CDS-L-elsbetiae_contig2052:7580..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2052 7581..7743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2052.6183.1prot_L-elsbetiae_contig2052.6183.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2052 6896..7743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2052.6183.1

>prot_L-elsbetiae_contig2052.6183.1 ID=prot_L-elsbetiae_contig2052.6183.1|Name=mRNA_L-elsbetiae_contig2052.6183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
AGGQRGADLSTPEGLRRSFTFDRLQQEVHNKRSVGMSYNAIFSELAAQAK
DGGERARGASKHARRETVAARTRHPLPRSQGSRNSGSTSMR
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mRNA from alignment at L-elsbetiae_contig2052:6896..7745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2052.6183.1 ID=mRNA_L-elsbetiae_contig2052.6183.1|Name=mRNA_L-elsbetiae_contig2052.6183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=850bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:6896..7745+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGCGGCCAGCGGGGAGCAGATCTCTCAACTCCTGAGGGATTGCGACG
CTCCTTCACGTTTGACAGGCTCCAGCAAGAAGTCCACAACAAGAGAAGCG
TTGGCATGAGGTAAGCCAACCCAATGCTTGGTTGCTGGGTATGGTGGTTG
TAGCGGAGGTAATATATAGGGGAGAGGTGGGTGTGGGGCATACTCTACGC
GTGTTCGCCTGAGTTTGCTACTCCTTCAGTCTGAAAATCGCGTGTCAGCC
TAGTAGCACGTGGGAAGGGGGAGAGGCAGTGTTGGTTTGAGGAGGGTTTG
AGGGGGTCAATACCGTACCGGCTGTATAAGCCCGAAGGTGGATTGTTCTA
TTGGCACCAAATCCACGAGAGATCAGTGGTGTCACCGTTTCCGTGCCGCT
ATGACGGCGCTGCAGATACGAAGTAACACATACCTTTGGACATGCTTGAT
GTTTAGGCCCTCGGGAGTACAGCAGTGCACGTTCATAGAGTAAGGATCGC
CGAAACTGCTGGTGAATAAATAGTGTTATGATGGGCCTCCTCACGGATTC
CCGCGTAAAATGCTACCCTCCCTGGAAATCTACTACTGTAGAAGGTCCAT
CGGTGGCGACGGCATTCTCTCGATCCGTGCCACCTCGAACACCCATAACA
CCAACTCCGCCTACTAACGTGCCACCAAAAAACAGTTATAACGCCATATT
TAGCGAACTGGCCGCTCAAGCGAAGGATGGAGGCGAGAGGGCGAGGGGAG
CCAGCAAGCATGCCAGGAGAGAGACAGTGGCGGCAAGGACCCGGCACCCC
TTGCCAAGAAGCCAGGGGAGCAGGAACAGTGGATCGACATCGATGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2052:6896..7745+

>mRNA_L-elsbetiae_contig2052.6183.1 ID=mRNA_L-elsbetiae_contig2052.6183.1|Name=mRNA_L-elsbetiae_contig2052.6183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig2052:6896..7745+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGCGGCCAGCGGGGAGCAGATCTCTCAACTCCTGAGGGATTGCGACG
CTCCTTCACGTTTGACAGGCTCCAGCAAGAAGTCCACAACAAGAGAAGCG
TTGGCATGAGGCGGGCGGCCAGCGGGGAGCAGATCTCTCAACTCCTGAGG
GATTGCGACGCTCCTTCACGTTTGACAGGCTCCAGCAAGAAGTCCACAAC
AAGAGAAGCGTTGGCATGAGTTATAACGCCATATTTAGCGAACTGGCCGC
TCAAGCGAAGGATGGAGGCGAGAGGGCGAGGGGAGCCAGCAAGCATGCCA
GGAGAGAGACAGTGGCGGCAAGGACCCGGCACCCCTTGCCAAGAAGCCAG
GGGAGCAGGAACAGTGGATCGACATCGATGCGGTTATAACGCCATATTTA
GCGAACTGGCCGCTCAAGCGAAGGATGGAGGCGAGAGGGCGAGGGGAGCC
AGCAAGCATGCCAGGAGAGAGACAGTGGCGGCAAGGACCCGGCACCCCTT
GCCAAGAAGCCAGGGGAGCAGGAACAGTGGATCGACATCGATGCGG
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